mRNA_P-littoralis_Contig888.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig888.1.1
Unique NamemRNA_P-littoralis_Contig888.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig888.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig888contigP-littoralis_Contig888:4059..4644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size586
Hectar predicted targeting categoryother localisation
Exons1
Cds size390
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791774.9541712-UTR-P-littoralis_Contig888:4058..42541680791774.9541712-UTR-P-littoralis_Contig888:4058..4254Pylaiella littoralis U1_48UTRP-littoralis_Contig888 4059..4254 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791774.9652135-CDS-P-littoralis_Contig888:4254..46441680791774.9652135-CDS-P-littoralis_Contig888:4254..4644Pylaiella littoralis U1_48CDSP-littoralis_Contig888 4255..4644 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig888.1.1prot_P-littoralis_Contig888.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig888 4255..4644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig888.1.1

>prot_P-littoralis_Contig888.1.1 ID=prot_P-littoralis_Contig888.1.1|Name=mRNA_P-littoralis_Contig888.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=130bp
MRKPGRDAVRICRSLVWWRDAVPAAASDLLAGLLRCGCLSGTLSPLRHPP
FAGVAAGRCPRGCTIARMTSSLVPASTRFFSESCDSLARVPAWLSCGILG
WLLSPRARLRMHFPVDDYTAQASAGVLLCC
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mRNA from alignment at P-littoralis_Contig888:4059..4644+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig888.1.1 ID=mRNA_P-littoralis_Contig888.1.1|Name=mRNA_P-littoralis_Contig888.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=586bp|location=Sequence derived from alignment at P-littoralis_Contig888:4059..4644+ (Pylaiella littoralis U1_48)
CAATGCTGCCAGCTGAACACTCGGCCTTGTGGAGGATGCTGTGTGTGGGT
TCCCCACCTGTTATATGGTGTCCAACGAGAATGATTCGTAGTGCTATCAG
GAGTCTGGAGTGCTGACCGCGCTTGCTTGCGGCCATTTTACACGCGGGCA
GCCTGCGCAAACGGATTCCTGCAGCGTGCGCAAACGGCTTCTTGCGATGC
GGAAGCCTGGGCGGGACGCTGTACGCATTTGCCGGTCCTTGGTGTGGTGG
CGGGACGCTGTCCCCGCGGCTGCATCTGACCTGCTGGCTGGCCTGTTGCG
CTGTGGCTGCCTGAGCGGGACGCTGTCCCCTCTTAGGCATCCGCCGTTTG
CTGGTGTCGCAGCGGGACGTTGTCCCCGCGGATGCACCATTGCGCGCATG
ACCAGCTCTCTCGTGCCTGCGAGCACGCGTTTTTTTTCGGAAAGCTGTGA
CTCGCTCGCGCGGGTCCCCGCGTGGCTCTCCTGTGGGATACTTGGCTGGC
TACTGTCGCCACGTGCGCGACTGCGTATGCACTTTCCTGTGGACGATTAC
ACAGCACAGGCCTCAGCGGGTGTTCTGCTGTGCTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig888:4059..4644+

>mRNA_P-littoralis_Contig888.1.1 ID=mRNA_P-littoralis_Contig888.1.1|Name=mRNA_P-littoralis_Contig888.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig888:4059..4644+ (Pylaiella littoralis U1_48)
ATGCGGAAGCCTGGGCGGGACGCTGTACGCATTTGCCGGTCCTTGGTGTG
GTGGCGGGACGCTGTCCCCGCGGCTGCATCTGACCTGCTGGCTGGCCTGT
TGCGCTGTGGCTGCCTGAGCGGGACGCTGTCCCCTCTTAGGCATCCGCCG
TTTGCTGGTGTCGCAGCGGGACGTTGTCCCCGCGGATGCACCATTGCGCG
CATGACCAGCTCTCTCGTGCCTGCGAGCACGCGTTTTTTTTCGGAAAGCT
GTGACTCGCTCGCGCGGGTCCCCGCGTGGCTCTCCTGTGGGATACTTGGC
TGGCTACTGTCGCCACGTGCGCGACTGCGTATGCACTTTCCTGTGGACGA
TTACACAGCACAGGCCTCAGCGGGTGTTCTGCTGTGCTGC
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