mRNA_P-littoralis_Contig887.33.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig887.33.1
Unique NamemRNA_P-littoralis_Contig887.33.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig887.33.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 1.760e-56
Identity = 95/129 (73.64%), Postives = 113/129 (87.60%), Query Frame = 1
Query:  334 YSGNFGRSEYARKKGLDKKAGYITSADDSKLEALMDIMRFFEKWRCNL-EKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRPRDTPRYVNPRHHCQDVVENRFGHMRDGLGSH 717
            +SGNFGRSEYAR+ GLDK+AGYI+SADDSKLE L++++RFF+KWR +L EKTT+GD TWKKHFITE+SWTDIRV ILGFVSMCRYLFE+DSRFKVS  R  P ++N R+  QDV+E+ FGHMR GLGSH
Sbjct:  548 WSGNFGRSEYARRNGLDKEAGYISSADDSKLEELINMVRFFDKWRSSLQEKTTMGDETWKKHFITEFSWTDIRVCILGFVSMCRYLFEEDSRFKVSPRRPWPHFINQRNCGQDVIEHCFGHMRQGLGSH 676          
BLAST of mRNA_P-littoralis_Contig887.33.1 vs. uniprot
Match: A0A6H5JTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX6_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 6.540e-52
Identity = 87/134 (64.93%), Postives = 105/134 (78.36%), Query Frame = 1
Query:  319 MCMCIYSGNFGRSEYARKKGLDKKAGYITSADDSKLEALMDIMRFFEKWRCNLE-KTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRPRDTPRYVNPRHHCQDVVENRFGHMRDGLGSH 717
            +C+ I++GNFGRS+YARK GLDK  GY  SADDSKLE LMDI+RFF++WR +LE + TLGD  WK HFIT++SWTDIRV ILG VSMCRYLFE DSRFK+    D P ++N R   QD+VE+R+GHM   LGSH
Sbjct:   30 VCVRIHAGNFGRSDYARKNGLDKMVGYTGSADDSKLEGLMDILRFFDEWRASLEARPTLGD--WKAHFITDHSWTDIRVCILGTVSMCRYLFEKDSRFKIYPLSDVPHFINLRCIGQDIVEHRYGHMCQCLGSH 161          
BLAST of mRNA_P-littoralis_Contig887.33.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 1.650e-35
Identity = 69/114 (60.53%), Postives = 85/114 (74.56%), Query Frame = 1
Query:  343 NFGRSEYARKKGLDKKAGYITSADDSKLEALMDIMRFFEKWRCNLE-KTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRPRDTPRYVNPRHHCQDVVEN 681
            NFGRS+YARK GLDK   YI SADDSKLE +MDI+  F++WR +LE + TLGD  WK HFIT++SWTDIRV ILG VSMCRY+FE+DS FK+    D P ++N R+  Q   +N
Sbjct:  428 NFGRSDYARKNGLDKMVSYIRSADDSKLEEVMDILLLFDEWRASLEARPTLGDGAWKAHFITDHSWTDIRVCILGTVSMCRYVFEEDSTFKIPPLSDVPHFINLRYIGQASQKN 541          
BLAST of mRNA_P-littoralis_Contig887.33.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 2.490e-33
Identity = 64/135 (47.41%), Postives = 93/135 (68.89%), Query Frame = 1
Query:  331 IYSGNFGRSEYARKKGLDKKAGYITSADDSKLEALMDIMRFFEKWRCNLEKTTL----GD-VTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKV-SRPRDTPRYVNPRHHCQDVVENRFGHMRDGLGSH 717
            I++GN+GRS+  RK G  K  G I S + + ++ L++I+ FF+ W+  LE+  +    GD + WKKHFIT  SW D+R+SILGFVSMCRYLFED  RF++ S   +  R+++PR+  QD+ E+RF H+R  LG+H
Sbjct:   62 IFNGNYGRSKVDRKDGSKKMVGCIRSFESAPMDRLLEILEFFDDWQSTLERKHIPSGEGDKLGWKKHFITHQSWFDLRLSILGFVSMCRYLFEDPERFQIDSLSPNCRRFLSPRNCSQDICEHRFSHIRAALGTH 196          
BLAST of mRNA_P-littoralis_Contig887.33.1 vs. uniprot
Match: A0A6H5KH17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH17_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 9.340e-29
Identity = 55/78 (70.51%), Postives = 64/78 (82.05%), Query Frame = 1
Query:  340 GNFGRSEYARKKGLDKKAGYITSADDSKLEALMDIMRFFEKWRCNLE-KTTLGDVTWKKHFITEYSWTDIRVSILGFV 570
            GNFGRS+YARK GLDK  GYI SADDSKLE LMDI+RFF++WR +LE + TLG   WK +FIT++SWTDIRV ILG V
Sbjct:   24 GNFGRSDYARKNGLDKMVGYIRSADDSKLEELMDILRFFDEWRASLEARPTLGGRAWKAYFITDHSWTDIRVCILGTV 101          
BLAST of mRNA_P-littoralis_Contig887.33.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.340e-28
Identity = 58/129 (44.96%), Postives = 84/129 (65.12%), Query Frame = 1
Query:  331 IYSGNFGRSEYARKKGLDKKAGYITSADDSKLEALMDIMRFFEKWRCNLEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRPRDTPRYVNPRHHCQDVVENRFGHMRDGLGSH 717
            I +G +G +E  RK+G +K+ GYIT AD   L  L++I+ FF+ W+ +LE    G   W  HFIT+YSWTD+R +ILGFV+MCRY+F+D+      R      ++ PR   QD++E+RF H+R G G+H
Sbjct:  471 IMNGVYGLNEVERKQGGNKRKGYITGADSPLLGRLLEILEFFDSWQVSLE-AHFGPKEWANHFITDYSWTDMRTTILGFVAMCRYVFKDEDLVSGGR------FLYPRMFSQDILEHRFAHIRSGRGTH 592          
BLAST of mRNA_P-littoralis_Contig887.33.1 vs. uniprot
Match: A0A6H5JNK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNK0_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.750e-17
Identity = 41/61 (67.21%), Postives = 51/61 (83.61%), Query Frame = 1
Query:  394 GYITSADDSKLEALMDIMRFFEKWRCNLE-KTTLGDVTWKKHFITEYSWTDIRVSILGFVS 573
            GYI SAD SKLE LMDI+RFF++WR +LE + TLGD TW+ HFIT++SWTDI+V ILG V+
Sbjct:    3 GYIRSADRSKLE-LMDILRFFDEWRASLEARPTLGDGTWEAHFITDHSWTDIQVCILGTVA 62          
BLAST of mRNA_P-littoralis_Contig887.33.1 vs. uniprot
Match: A0A6H5K095_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K095_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.020e-12
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 1
Query:  391 AGYITSADDSKLEALMDIMRFFEKWRCNLE-KTTLGDVTWKKHFITEYS 534
            AGYI SADDSKLE LMDI+RF  +WR +LE ++TLGD  WK HFIT++S
Sbjct:    2 AGYIRSADDSKLEELMDILRFLGEWRASLEARSTLGDCAWKAHFITDHS 50          
BLAST of mRNA_P-littoralis_Contig887.33.1 vs. uniprot
Match: A0A6H5K071_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K071_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.260e-11
Identity = 39/124 (31.45%), Postives = 64/124 (51.61%), Query Frame = 1
Query:  346 FGRSEYARKKGLDKKAGYITSADDSKLEALMDIMRFFEKWRCNLEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRPRDTPRYVNPRHHCQDVVENRFGHMRDGLGSH 717
            + R      K +D +   ITS D   L+ L++I+ +F+ W  +L      D+     F+ + +W D+R++ILGFV+M RY+F DD  +     R   +++   +   D  E RFGH+R   G H
Sbjct:  493 YNRDPIDVSKRIDIRKSCITSKDSPLLDRLLEILEWFDTWWQDLNLFGGSDLALDDLFLPDQTWDDLRLTILGFVAMTRYVFGDDD-WVTEGSRGRYKFMRDWNQASDTCEKRFGHIRANQGCH 615          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig887.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JR14_9PHAE1.760e-5673.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTX6_9PHAE6.540e-5264.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRH8_9PHAE1.650e-3560.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5I6_9PHAE2.490e-3347.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH17_9PHAE9.340e-2970.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE2.340e-2844.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNK0_9PHAE2.750e-1767.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K095_9PHAE1.020e-1267.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K071_9PHAE1.260e-1131.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig887contigP-littoralis_Contig887:105088..105950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size719
Hectar predicted targeting categoryother localisation
Exons2
Cds size717
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791774.752072-CDS-P-littoralis_Contig887:105087..1057531680791774.752072-CDS-P-littoralis_Contig887:105087..105753Pylaiella littoralis U1_48CDSP-littoralis_Contig887 105088..105753 +
1680791774.7648199-CDS-P-littoralis_Contig887:105899..1059501680791774.7648199-CDS-P-littoralis_Contig887:105899..105950Pylaiella littoralis U1_48CDSP-littoralis_Contig887 105900..105950 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig887.33.1prot_P-littoralis_Contig887.33.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig887 105088..105950 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig887.33.1

>prot_P-littoralis_Contig887.33.1 ID=prot_P-littoralis_Contig887.33.1|Name=mRNA_P-littoralis_Contig887.33.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=239bp
MAATDYFVTYYADAGVRSAGWGLSGEFWGPVERFSQQMMQLAKNINNSAA
MYRHISTRRSLILLFHVPTRLNKKESTDLLTYSVYFSSRNVHTLCASFVS
SHTAPCMCMCIYSGNFGRSEYARKKGLDKKAGYITSADDSKLEALMDIMR
FFEKWRCNLEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDD
SRFKVSRPRDTPRYVNPRHHCQDVVENRFGHMRDGLGSH
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mRNA from alignment at P-littoralis_Contig887:105088..105950+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig887.33.1 ID=mRNA_P-littoralis_Contig887.33.1|Name=mRNA_P-littoralis_Contig887.33.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=863bp|location=Sequence derived from alignment at P-littoralis_Contig887:105088..105950+ (Pylaiella littoralis U1_48)
ATGGCTGCAACGGATTATTTCGTGACATATTATGCGGATGCCGGGGTGCG GAGTGCAGGATGGGGGCTCAGTGGTGAGTTTTGGGGCCCCGTGGAACGAT TCTCGCAACAAATGATGCAATTAGCCAAAAACATAAATAACTCTGCAGCT ATGTATCGACATATCTCGACGAGGCGATCACTAATATTGTTGTTTCACGT CCCAACGCGATTGAACAAAAAGGAGAGCACGGACCTACTTACATACTCCG TATATTTTTCCTCGCGCAATGTACACACTCTGTGCGCGTCGTTTGTCTCT TCCCACACGGCCCCATGTATGTGTATGTGTATATATTCAGGAAACTTCGG CCGCTCGGAGTACGCGCGCAAGAAAGGCCTCGACAAGAAAGCGGGCTACA TTACATCGGCCGACGACTCCAAACTAGAAGCACTCATGGACATCATGCGT TTTTTCGAGAAGTGGCGGTGCAATCTGGAGAAGACGACGCTGGGCGACGT CACCTGGAAGAAGCACTTCATCACGGAGTACTCGTGGACCGACATCCGGG TGTCCATCCTTGGCTTCGTCAGTATGTGCCGATACTTGTTCGAGGATGAT TCGAGGTTCAAGGTCTCCCGCCCGCGCGACACGCCCCGCTACGTCAACCC GCGGCACCATTGCCAGGTATCATGTGCACACAGCGTACTATGTTGTGGCT GATTCTGCCTGTGGGTCTAGTGTGCGTCCGGTCCGACTCCGAGGAGCATT TTCTGAAATTGCGTCGACCTCTCCCCCCCTGTTTTCCACCACTTCGCCTT CTAACCCCACAGGATGTCGTGGAGAACCGCTTCGGGCACATGCGCGACGG CCTCGGGTCGCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig887:105088..105950+

>mRNA_P-littoralis_Contig887.33.1 ID=mRNA_P-littoralis_Contig887.33.1|Name=mRNA_P-littoralis_Contig887.33.1|organism=Pylaiella littoralis U1_48|type=CDS|length=717bp|location=Sequence derived from alignment at P-littoralis_Contig887:105088..105950+ (Pylaiella littoralis U1_48)
ATGGCTGCAACGGATTATTTCGTGACATATTATGCGGATGCCGGGGTGCG
GAGTGCAGGATGGGGGCTCAGTGGTGAGTTTTGGGGCCCCGTGGAACGAT
TCTCGCAACAAATGATGCAATTAGCCAAAAACATAAATAACTCTGCAGCT
ATGTATCGACATATCTCGACGAGGCGATCACTAATATTGTTGTTTCACGT
CCCAACGCGATTGAACAAAAAGGAGAGCACGGACCTACTTACATACTCCG
TATATTTTTCCTCGCGCAATGTACACACTCTGTGCGCGTCGTTTGTCTCT
TCCCACACGGCCCCATGTATGTGTATGTGTATATATTCAGGAAACTTCGG
CCGCTCGGAGTACGCGCGCAAGAAAGGCCTCGACAAGAAAGCGGGCTACA
TTACATCGGCCGACGACTCCAAACTAGAAGCACTCATGGACATCATGCGT
TTTTTCGAGAAGTGGCGGTGCAATCTGGAGAAGACGACGCTGGGCGACGT
CACCTGGAAGAAGCACTTCATCACGGAGTACTCGTGGACCGACATCCGGG
TGTCCATCCTTGGCTTCGTCAGTATGTGCCGATACTTGTTCGAGGATGAT
TCGAGGTTCAAGGTCTCCCGCCCGCGCGACACGCCCCGCTACGTCAACCC
GCGGCACCATTGCCAGGATGTCGTGGAGAACCGCTTCGGGCACATGCGCG
ACGGCCTCGGGTCGCAC
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