mRNA_P-littoralis_Contig887.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig887.7.1
Unique NamemRNA_P-littoralis_Contig887.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig887.7.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 1.950e-39
Identity = 66/88 (75.00%), Postives = 80/88 (90.91%), Query Frame = 1
Query:    1 KAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVN 264
            +AGYI+SADDSKLEEL++++RFF+KWR +L+EKTT+GD TWKKHFITE+SWTDIRV ILGFVSMCRYLFE+DSRFKVS  R  P ++N
Sbjct:  566 EAGYISSADDSKLEELINMVRFFDKWRSSLQEKTTMGDETWKKHFITEFSWTDIRVCILGFVSMCRYLFEEDSRFKVSPRRPWPHFIN 653          
BLAST of mRNA_P-littoralis_Contig887.7.1 vs. uniprot
Match: A0A6H5JTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX6_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.010e-34
Identity = 60/86 (69.77%), Postives = 69/86 (80.23%), Query Frame = 1
Query:    7 GYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVN 264
            GY  SADDSKLE LMDILRFF++WR +LE + TLGD  WK HFIT++SWTDIRV ILG VSMCRYLFE DSRFK+  L D P ++N
Sbjct:   55 GYTGSADDSKLEGLMDILRFFDEWRASLEARPTLGD--WKAHFITDHSWTDIRVCILGTVSMCRYLFEKDSRFKIYPLSDVPHFIN 138          
BLAST of mRNA_P-littoralis_Contig887.7.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.130e-31
Identity = 56/86 (65.12%), Postives = 68/86 (79.07%), Query Frame = 1
Query:    7 GYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVN 264
             YI SADDSKLEE+MDIL  F++WR +LE + TLGD  WK HFIT++SWTDIRV ILG VSMCRY+FE+DS FK+  L D P ++N
Sbjct:  445 SYIRSADDSKLEEVMDILLLFDEWRASLEARPTLGDGAWKAHFITDHSWTDIRVCILGTVSMCRYVFEEDSTFKIPPLSDVPHFIN 530          
BLAST of mRNA_P-littoralis_Contig887.7.1 vs. uniprot
Match: A0A6H5JZW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW9_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 2.410e-31
Identity = 54/82 (65.85%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    7 GYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTP 252
            GYI S DDSKL+ELMDIL FF++WR +LE + TLGD  WK HFIT++ WTD RV ILG V MCRYL E DSRFK+S L   P
Sbjct:    3 GYIRSTDDSKLDELMDILWFFDEWRASLEARPTLGDGAWKAHFITDHLWTDSRVCILGTVRMCRYLIEKDSRFKISPLNMFP 84          
BLAST of mRNA_P-littoralis_Contig887.7.1 vs. uniprot
Match: A0A6H5KH17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH17_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.760e-22
Identity = 43/60 (71.67%), Postives = 50/60 (83.33%), Query Frame = 1
Query:    7 GYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFV 186
            GYI SADDSKLEELMDILRFF++WR +LE + TLG   WK +FIT++SWTDIRV ILG V
Sbjct:   42 GYIRSADDSKLEELMDILRFFDEWRASLEARPTLGGRAWKAYFITDHSWTDIRVCILGTV 101          
BLAST of mRNA_P-littoralis_Contig887.7.1 vs. uniprot
Match: A0A6H5JNK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNK0_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.710e-21
Identity = 42/61 (68.85%), Postives = 51/61 (83.61%), Query Frame = 1
Query:    7 GYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVS 189
            GYI SAD SKL ELMDILRFF++WR +LE + TLGD TW+ HFIT++SWTDI+V ILG V+
Sbjct:    3 GYIRSADRSKL-ELMDILRFFDEWRASLEARPTLGDGTWEAHFITDHSWTDIQVCILGTVA 62          
BLAST of mRNA_P-littoralis_Contig887.7.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 9.290e-20
Identity = 45/92 (48.91%), Postives = 63/92 (68.48%), Query Frame = 1
Query:    7 GYITSADDSKLEELMDILRFFEKWRCNLEEK---TTLGD-VTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLR-DTPRYVNP 267
            G I S + + ++ L++IL FF+ W+  LE K   +  GD + WKKHFIT  SW D+R+SILGFVSMCRYLFED  RF++  L  +  R+++P
Sbjct:   83 GCIRSFESAPMDRLLEILEFFDDWQSTLERKHIPSGEGDKLGWKKHFITHQSWFDLRLSILGFVSMCRYLFEDPERFQIDSLSPNCRRFLSP 174          
BLAST of mRNA_P-littoralis_Contig887.7.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 4.930e-18
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    1 KAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDD 216
            + GYIT AD   L  L++IL FF+ W+ +LE     G   W  HFIT+YSWTD+R +ILGFV+MCRY+F+D+
Sbjct:  490 RKGYITGADSPLLGRLLEILEFFDSWQVSLEAH--FGPKEWANHFITDYSWTDMRTTILGFVAMCRYVFKDE 559          
BLAST of mRNA_P-littoralis_Contig887.7.1 vs. uniprot
Match: A0A6H5K095_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K095_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.650e-17
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 1
Query:    4 AGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYS 150
            AGYI SADDSKLEELMDILRF  +WR +LE ++TLGD  WK HFIT++S
Sbjct:    2 AGYIRSADDSKLEELMDILRFLGEWRASLEARSTLGDCAWKAHFITDHS 50          
BLAST of mRNA_P-littoralis_Contig887.7.1 vs. uniprot
Match: A0A6H5K071_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K071_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 4.070e-6
Identity = 28/72 (38.89%), Postives = 43/72 (59.72%), Query Frame = 1
Query:   13 ITSADDSKLEELMDILRFFEKWRCNLE----EKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDD 216
            ITS D   L+ L++IL +F+ W  +L         L D+     F+ + +W D+R++ILGFV+M RY+F DD
Sbjct:  511 ITSKDSPLLDRLLEILEWFDTWWQDLNLFGGSDLALDDL-----FLPDQTWDDLRLTILGFVAMTRYVFGDD 577          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig887.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JR14_9PHAE1.950e-3975.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTX6_9PHAE1.010e-3469.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRH8_9PHAE1.130e-3165.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZW9_9PHAE2.410e-3165.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH17_9PHAE1.760e-2271.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNK0_9PHAE1.710e-2168.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5I6_9PHAE9.290e-2048.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE4.930e-1852.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K095_9PHAE1.650e-1771.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K071_9PHAE4.070e-638.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig887contigP-littoralis_Contig887:8505..8773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size269
Hectar predicted targeting categoryother localisation
Exons1
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791774.318523-CDS-P-littoralis_Contig887:8506..87731680791774.318523-CDS-P-littoralis_Contig887:8506..8773Pylaiella littoralis U1_48CDSP-littoralis_Contig887 8507..8773 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig887.7.1prot_P-littoralis_Contig887.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig887 8507..8773 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig887.7.1

>prot_P-littoralis_Contig887.7.1 ID=prot_P-littoralis_Contig887.7.1|Name=mRNA_P-littoralis_Contig887.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=89bp
KAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYS
WTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVNP
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mRNA from alignment at P-littoralis_Contig887:8505..8773-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig887.7.1 ID=mRNA_P-littoralis_Contig887.7.1|Name=mRNA_P-littoralis_Contig887.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=269bp|location=Sequence derived from alignment at P-littoralis_Contig887:8505..8773- (Pylaiella littoralis U1_48)
AAAGCGGGCTACATTACATCGGCCGACGACTCCAAACTAGAAGAACTCAT GGACATCTTGCGTTTTTTCGAGAAGTGGCGGTGCAATCTGGAGGAGAAGA CGACGCTGGGCGACGTCACCTGGAAGAAGCACTTCATCACGGAGTACTCG TGGACCGACATCCGGGTGTCCATCCTTGGCTTCGTCAGTATGTGCCGATA CTTGTTCGAGGATGATTCGAGGTTCAAGGTCTCCCGCCTGCGCGACACGC CCCGCTACGTCAACCCGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig887:8505..8773-

>mRNA_P-littoralis_Contig887.7.1 ID=mRNA_P-littoralis_Contig887.7.1|Name=mRNA_P-littoralis_Contig887.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=267bp|location=Sequence derived from alignment at P-littoralis_Contig887:8505..8773- (Pylaiella littoralis U1_48)
AAAGCGGGCTACATTACATCGGCCGACGACTCCAAACTAGAAGAACTCAT
GGACATCTTGCGTTTTTTCGAGAAGTGGCGGTGCAATCTGGAGGAGAAGA
CGACGCTGGGCGACGTCACCTGGAAGAAGCACTTCATCACGGAGTACTCG
TGGACCGACATCCGGGTGTCCATCCTTGGCTTCGTCAGTATGTGCCGATA
CTTGTTCGAGGATGATTCGAGGTTCAAGGTCTCCCGCCTGCGCGACACGC
CCCGCTACGTCAACCCG
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