mRNA_P-littoralis_Contig887.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig887.6.1
Unique Name	mRNA_P-littoralis_Contig887.6.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig887.6.1 vs. uniprot
Match: A0A6H5K630_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K630_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.110e-37
Identity = 71/105 (67.62%), Postives = 82/105 (78.10%), Query Frame = 2

Query:    2 AKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTPASAGQTIEVVNPY 316
            AKERAARGDLNR L G SRANHNR +R+G D+IASG R +I+LP+T+ ERSATMR  S N  +AV+F RY+S  +PRA P VEG ASQESTPASAGQT  V N Y
Sbjct:   16 AKERAARGDLNRGLRGGSRANHNRTSRKGSDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFSRYLSVVKPRADPTVEGGASQESTPASAGQTPVVFNSY 120

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BLAST of mRNA_P-littoralis_Contig887.6.1 vs. uniprot
Match: A0A6H5K5X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5X1_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 4.340e-36
Identity = 74/105 (70.48%), Postives = 84/105 (80.00%), Query Frame = 2

Query:    2 AKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTPASAGQTIEVVNPY 316
            AKERA RGDL RSLHG SRA HN+NAR+G+D+IASG R RI+LP+T+ ERSATMR  S N  +AV+FPRYIS D+P A PVV GSASQEST A AGQT  V NPY
Sbjct:  554 AKERAERGDLQRSLHGVSRAKHNQNARKGEDFIASGIRGRIILPVTDAERSATMRAPSKNPASAVMFPRYISIDKPHADPVVGGSASQESTAAPAGQTPVVFNPY 658

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BLAST of mRNA_P-littoralis_Contig887.6.1 vs. uniprot
Match: A0A6H5KZP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP5_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 3.010e-35
Identity = 66/97 (68.04%), Postives = 77/97 (79.38%), Query Frame = 2

Query:   26 DLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTPASAGQTIEVVNPY 316
            DLNR LHG SRANHNR +R+G D+IASG R +I+LP+T+ ERSATMR  S N  +AV+FPRY+S  +PRA P VEGSASQESTPASAGQ   V NPY
Sbjct:   89 DLNRGLHGGSRANHNRTSRKGNDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFPRYLSVVKPRADPTVEGSASQESTPASAGQIPVVFNPY 185

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BLAST of mRNA_P-littoralis_Contig887.6.1 vs. uniprot
Match: A0A6H5KB63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB63_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 2.150e-28
Identity = 55/76 (72.37%), Postives = 64/76 (84.21%), Query Frame = 2

Query:    2 AKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRP 229
            AKER ARGDL RSLHG SRANHN+NAR+G+D+IASG R RIMLP+T+ ERSATMR  S N  +AV+FPRYIS D+P
Sbjct:   16 AKERTARGDLQRSLHGVSRANHNKNARKGEDFIASGIRGRIMLPVTDAERSATMRAPSRNPVSAVMFPRYISIDKP 91

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BLAST of mRNA_P-littoralis_Contig887.6.1 vs. uniprot
Match: A0A6H5JS87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS87_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 8.800e-26
Identity = 53/76 (69.74%), Postives = 64/76 (84.21%), Query Frame = 2

Query:    2 AKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRP 229
            AKERAARGDL RSLHG SRANHN+N R+G+++IASG R RIMLP+T+ ERSATMR  S N+ +AV+FPRYIS  +P
Sbjct:   81 AKERAARGDLYRSLHGVSRANHNKNERKGEEFIASGIRGRIMLPVTDAERSATMRAPSRNSVSAVMFPRYISIHKP 156

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BLAST of mRNA_P-littoralis_Contig887.6.1 vs. uniprot
Match: A0A6H5L2C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2C2_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 4.150e-23
Identity = 50/76 (65.79%), Postives = 61/76 (80.26%), Query Frame = 2

Query:    2 AKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRP 229
            AKERAARGDLNR L G SRANHNR +R+G D+IASG R +I+LP+T+ ERSATMR  S N  +AV+FPRY+S  +P
Sbjct:   91 AKERAARGDLNRGLQGGSRANHNRTSRKGNDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFPRYLSVVKP 166

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BLAST of mRNA_P-littoralis_Contig887.6.1 vs. uniprot
Match: A0A6H5K6I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6I9_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 7.260e-23
Identity = 59/105 (56.19%), Postives = 71/105 (67.62%), Query Frame = 2

Query:    2 AKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTPASAGQTIEVVNPY 316
            AKER+ RGDLNR LHG SRAN NRNAR G D+I S YR+RIML +T+ E +  +R  S N+P AVL PRYIS +   AAPVVE        PA+ G +  +VNPY
Sbjct:  262 AKERSVRGDLNRGLHGGSRANFNRNARSGNDFIDSDYRSRIMLAVTQAEAAENVRARSRNSPNAVLCPRYISVEPLAAAPVVEAPV-----PAAQGSST-IVNPY 360

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BLAST of mRNA_P-littoralis_Contig887.6.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 9.770e-22
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 2

Query:    2 AKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTP 277
            AKER ARGD+ R LHG  RAN+NRNAR+G+D++ASGYRA +MLP+ EGERS  +R  + ++  AVL P YIS   P A PV +GSA +   P
Sbjct:  684 AKERGARGDILRGLHGPCRANYNRNARKGRDFVASGYRAEVMLPVGEGERSVRIRARTKDSDEAVLSPWYISVAAPGATPVADGSAVESGAP 775

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BLAST of mRNA_P-littoralis_Contig887.6.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.630e-20
Identity = 57/105 (54.29%), Postives = 68/105 (64.76%), Query Frame = 2

Query:    2 AKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTPASAGQTIEVVNPY 316
            AKER+ RGDLNR LHG SRAN NRNAR G D+  S YR RIML +T+   +  +R  S N+P AVL PRYIS +   A PVVE      S PA+ G +  +VNPY
Sbjct:  934 AKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRGRIMLAVTQAVAAENVRSRSRNSPNAVLCPRYISVEPLAATPVVE-----TSVPAAQGSST-IVNPY 1032

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BLAST of mRNA_P-littoralis_Contig887.6.1 vs. uniprot
Match: A0A6H5K731_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K731_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 7.700e-20
Identity = 44/68 (64.71%), Postives = 55/68 (80.88%), Query Frame = 2

Query:   44 HGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVV 247
            HG SRANH +NAR+G+D+IASG R RIMLP+++ ERSATMR  S +  +AV+FPRYIS D+P A PVV
Sbjct:   43 HGVSRANHIKNARKGEDFIASGIRGRIMLPVSDAERSATMRAPSRDPVSAVMFPRYISIDKPHADPVV 110

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig887.6.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig887.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11


Match Name	E-value	Identity	Description
A0A6H5K630_9PHAE	1.110e-37	67.62	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K5X1_9PHAE	4.340e-36	70.48	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KZP5_9PHAE	3.010e-35	68.04	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KB63_9PHAE	2.150e-28	72.37	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JS87_9PHAE	8.800e-26	69.74	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L2C2_9PHAE	4.150e-23	65.79	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K6I9_9PHAE	7.260e-23	56.19	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JR14_9PHAE	9.770e-22	56.52	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FZI2_ECTSI	1.630e-20	54.29	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K731_9PHAE	7.700e-20	64.71	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig887	contig	P-littoralis_Contig887:7891..8271 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	381
Hectar predicted targeting category	other localisation
Exons	1
Cds size	201

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791774.259442-UTR-P-littoralis_Contig887:7890..7946	1680791774.259442-UTR-P-littoralis_Contig887:7890..7946	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig887 7891..7946 -
1680791774.281682-UTR-P-littoralis_Contig887:8147..8271	1680791774.281682-UTR-P-littoralis_Contig887:8147..8271	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig887 8148..8271 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791774.2711825-CDS-P-littoralis_Contig887:7946..8147	1680791774.2711825-CDS-P-littoralis_Contig887:7946..8147	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig887 7947..8147 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig887.6.1	prot_P-littoralis_Contig887.6.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig887 7947..8147 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig887:7891..8271-
coding sequence from alignment at P-littoralis_Contig887:7891..8271-

protein sequence of mRNA_P-littoralis_Contig887.6.1

>prot_P-littoralis_Contig887.6.1 ID=prot_P-littoralis_Contig887.6.1|Name=mRNA_P-littoralis_Contig887.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=67bp
MLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQEST
PASAGQTIEVVNPYTR*

mRNA from alignment at P-littoralis_Contig887:7891..8271-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig887.6.1 ID=mRNA_P-littoralis_Contig887.6.1|Name=mRNA_P-littoralis_Contig887.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=381bp|location=Sequence derived from alignment at P-littoralis_Contig887:7891..8271- (Pylaiella littoralis U1_48)
AGCGAAGGAGAGGGCAGCACGGGGGGACCTGAATCGTAGTCTGCACGGGC
GTTCCCGCGCAAACCACAATCGGAATGCGCGGAGAGGACAGGACTACATC
GCGTCCGGATACCGGGCACGGATCATGCTCCCAATAACGGAAGGAGAGCG
GTCTGCTACCATGCGGCCTAGCTCCTGGAACACTCCCGCAGCTGTTCTGT
TCCCGCGGTACATCAGCTACGACAGACCCCGCGCGGCCCCTGTGGTAGAG
GGTAGTGCATCCCAGGAGTCGACGCCCGCCTCTGCAGGCCAGACCATCGA
GGTCGTCAACCCATACACTCGTTAATAGGTTTAGAAGGGGTAGGGTGACA
ATGGAGAGAGAGGACGAGAAGATCGCAAGCC

Coding sequence (CDS) from alignment at P-littoralis_Contig887:7891..8271-

>mRNA_P-littoralis_Contig887.6.1 ID=mRNA_P-littoralis_Contig887.6.1|Name=mRNA_P-littoralis_Contig887.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=201bp|location=Sequence derived from alignment at P-littoralis_Contig887:7891..8271- (Pylaiella littoralis U1_48)
ATGCTCCCAATAACGGAAGGAGAGCGGTCTGCTACCATGCGGCCTAGCTC
CTGGAACACTCCCGCAGCTGTTCTGTTCCCGCGGTACATCAGCTACGACA
GACCCCGCGCGGCCCCTGTGGTAGAGGGTAGTGCATCCCAGGAGTCGACG
CCCGCCTCTGCAGGCCAGACCATCGAGGTCGTCAACCCATACACTCGTTA
A