mRNA_P-littoralis_Contig1206.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1206.7.1
Unique NamemRNA_P-littoralis_Contig1206.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1206.7.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 369 bits (947), Expect = 6.770e-124
Identity = 178/294 (60.54%), Postives = 217/294 (73.81%), Query Frame = 1
Query:    1 AWPLYIKPMPGDGTFKGRLRMHHVDFKILVDHLRSELERDTTMGALRNGAVPVEYQVGLTLRWLAGASMYEGMNGHVIARSTAYKTAFRVIKAINDCTELDCKWPATPEDVADKTAYFEKRCSVAVIRKCVGAMDGLFVRTIRPTTRDTAEPNSYYSRHKKGFGMNFQGICDAEYRIIAWTMNSPGRQNDRTAFKFSGFEQLLQDLPPDYFILGDAAYPASDRVLVPYPGTNLPTFHDAFNFWQSQGRISIEQTFGIMVRTWGILWRPMEFGLGRVVEVVGAVVRLHNFCRDRQ 882
            +W  Y KPM  DGTF+ R RM + +F +L D LR +LER+  MGALRNG +PVE+Q+ + LR+LAG S++E M+G+VIARSTAY    RVI AIN   ELDC WP   ED  D+   + +R +  VIR CVGAMDGLFVR  +P+ R    P S+YS HKKGFGMNFQG+C+A Y IIAWTMN PG  NDRTAFK S F  +L+ LPP  +I+GDAAYPASD+VLVPYPGT+L    DA+NF+QSQ RISIEQ FGIMV+TWGILWRP++  L RV  V+ +VVRLHNF R R+
Sbjct:   52 SWYTYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPVEFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPEG-EDALDQCGMYRRRSTNGVIRMCVGAMDGLFVRMTQPSLRRHVNPRSFYSGHKKGFGMNFQGVCNARYEIIAWTMNCPGSCNDRTAFKHSVFGTVLKTLPPGAYIVGDAAYPASDQVLVPYPGTSLTRSQDAYNFYQSQARISIEQAFGIMVKTWGILWRPLDMRLERVSSVINSVVRLHNFLRRRR 344          
BLAST of mRNA_P-littoralis_Contig1206.7.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 360 bits (923), Expect = 2.840e-120
Identity = 169/268 (63.06%), Postives = 207/268 (77.24%), Query Frame = 1
Query:   82 ILVDHLRSELERDTTMGALRNGAVPVEYQVGLTLRWLAGASMYEGMNGHVIARSTAYKTAFRVIKAINDCTELDCKWPATPEDVADKTAYFEKRCSVAVIRKCVGAMDGLFVRTIRPTTRDTAEPNSYYSRHKKGFGMNFQGICDAEYRIIAWTMNSPGRQNDRTAFKFSGFEQLLQDLPPDYFILGDAAYPASDRVLVPYPGTNLPTFHDAFNFWQSQGRISIEQTFGIMVRTWGILWRPMEFGLGRVVEVVGAVVRLHNFCRDRQV 885
            +LVDHLR  L+++  MG LRNGA+PVE QV +TLRWLAG S+YE M+GHVIARSTAY     VI A+N C EL+CKWP   ED A     F  R S+ V+RKCVGA DGLFVR I+P+ ++ AEPN YY+ HKKGFGMNFQ +CDA+YRI+AW MN PG QNDRTAF FSGF++LL  LP  +F++GDAAY AS+RV+VP+PGT+L    DA N++ SQ R++IEQT+GI+VR WGILWRPME  + +   VV AVVRLHNFCRDR+V
Sbjct:   72 VLVDHLRPALQKNQQMGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEG-EDAARAAELFRNRSSMDVVRKCVGATDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQAVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILVRRWGILWRPMEVRIEKFEHVVNAVVRLHNFCRDRKV 338          
BLAST of mRNA_P-littoralis_Contig1206.7.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 357 bits (917), Expect = 2.980e-119
Identity = 173/290 (59.66%), Postives = 213/290 (73.45%), Query Frame = 1
Query:   13 YIKPMPGDGTFKGRLRMHHVDFKILVDHLRSELERDTTMGALRNGAVPVEYQVGLTLRWLAGASMYEGMNGHVIARSTAYKTAFRVIKAINDCTELDCKWPATPEDVADKTAYFEKRCSVAVIRKCVGAMDGLFVRTIRPTTRDTAEPNSYYSRHKKGFGMNFQGICDAEYRIIAWTMNSPGRQNDRTAFKFSGFEQLLQDLPPDYFILGDAAYPASDRVLVPYPGTNLPTFHDAFNFWQSQGRISIEQTFGIMVRTWGILWRPMEFGLGRVVEVVGAVVRLHNFCRDRQ 882
            Y++PM  D TF+ R RM + DF  L D LR +L+RD  MGALRNGA+PVE+Q+ +TLR+LAG S++E M+ +VIA+STAY    RVI AIN   +L+CKWP   +D   +   + +R +  VIR+CVGAMDGLFVR I P  +  A P S+YS HKK FGMNFQGIC+A Y II WTMN PG QNDRTAFK SGF+ LL  +PPD FI+GDAAYPAS+RVLVP PGT L    DA+NF+QSQ RISIEQ FGI+V+TW ILW+P+   L RV  V+ A+VRLHNF R R+
Sbjct:   60 YVRPMVEDNTFRKRFRMDYTDFMTLADILRPKLQRDEKMGALRNGAIPVEFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWPYG-DDAEAQAELYRRRSTNGVIRRCVGAMDGLFVRLIPPCLKRHAVPGSFYSGHKKAFGMNFQGICNASYEIITWTMNCPGSQNDRTAFKHSGFDALLSKMPPDCFIVGDAAYPASNRVLVPDPGTALTLSQDAYNFYQSQARISIEQAFGILVKTWEILWKPLAIRLDRVGHVMNAIVRLHNFLRRRR 348          
BLAST of mRNA_P-littoralis_Contig1206.7.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE)

HSP 1 Score: 314 bits (804), Expect = 1.480e-102
Identity = 159/291 (54.64%), Postives = 198/291 (68.04%), Query Frame = 1
Query:   13 YIKPMPGDGTFKGRLRMHHVDFKILVDHLRSELERDTTMGALRNGAVPVEYQVGLTLRWLAGASMYEGMNGHVIARSTAYKTAFRVIKAINDCTELDCKWPATPEDVADKTAYFEKRCSVAVIRKCVGAMDGLFVRTIRPTTRDTAEPNSYYSRHKKGFGMNFQGICDAEYRIIAWTMNSPGRQNDRTAFKFSGFEQLLQDLPPDYFILGDAAYPASDRVLVPYPGTNLPTFHDAFNFWQSQGRISIEQTFGIMVRTWGILWRPMEFGLGRVVEVVGAVVRLHNFCRDRQV 885
            YIKPM  D TF  R RM + DF++LVDHLR  L+++   G LRNGA+PVEYQV +TLRWLAG S+YE M+GHVIARSTAY     VI A+N C EL+CKWP   ED+ +  ++      + V+RKCVGAMDGLFVR I+P+ ++ AEPN YY+ HKKGFGMNFQ +C                QNDRTAF FSGF++LL  LP  +F++G+AAY AS+RV+VP+PGT+ P                 EQT+GI+VR WGILWRPME  + +   VV AVVRLHNFC DR+V
Sbjct:   60 YIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQQNEKTGLLRNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPEG-EDLPEPPSFSATAALMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQ-VCS---------------QNDRTAFNFSGFDKLLAGLPEGHFVVGNAAYGASERVVVPFPGTSPPX----------------EQTYGILVRRWGILWRPMEVRIEKFEHVVNAVVRLHNFCWDRKV 317          
BLAST of mRNA_P-littoralis_Contig1206.7.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE)

HSP 1 Score: 276 bits (706), Expect = 2.400e-88
Identity = 132/226 (58.41%), Postives = 160/226 (70.80%), Query Frame = 1
Query:  196 GASMYEGMNGHVIARSTAYKTAFRVIKAINDCTELDCKWPATPEDVADKTAYFEKRCSVAVIRKCVGAMDGLFVRTIRPTTRDTAEPNSYYSRHKKGFGMNFQGICDAEYRIIAWTMNSPGRQNDRTAFKFSGFEQLLQDLPPDYFILGDAAYPASDRVLVPYPGTNLPTFHDAFNFWQSQGRISIEQTFGIMVRTWGILWRPMEFGLGRVVEVVGAVVRLHNFCR 873
            G S++E M+G V A+STAY   +RVI AIN   E DC WP   +D  D+   + +R +  VI  CVGAMDGLFV    P+ R    P  +YS HKKGFGMNFQ +C+A Y+I AWTMN PG  NDRTAFK SGFE++L+ LP   +I+GD AYPASD+VLVPYPGT L    D++NF+QSQ RI IEQ FG MV+TWGILWRP++  LGRV  V+ AVVRLHNF R
Sbjct:   51 GGSIFEVMDGCVFAKSTAYAIVYRVIDAINQTREFDCVWPEG-DDALDQCGVYRQRSTNNVIHMCVGAMDGLFVLIFEPSLRRHVNPRGFYSGHKKGFGMNFQAVCNARYKITAWTMNCPGSCNDRTAFKHSGFERVLKTLPKGAYIVGDGAYPASDQVLVPYPGTTLTPSQDSYNFYQSQARIFIEQAFGNMVKTWGILWRPLQVKLGRVSSVMNAVVRLHNFLR 275          
BLAST of mRNA_P-littoralis_Contig1206.7.1 vs. uniprot
Match: A0A6H5KNF2_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF2_9PHAE)

HSP 1 Score: 248 bits (632), Expect = 2.310e-78
Identity = 111/172 (64.53%), Postives = 140/172 (81.40%), Query Frame = 1
Query:  370 VAVIRKCVGAMDGLFVRTIRPTTRDTAEPNSYYSRHKKGFGMNFQGICDAEYRIIAWTMNSPGRQNDRTAFKFSGFEQLLQDLPPDYFILGDAAYPASDRVLVPYPGTNLPTFHDAFNFWQSQGRISIEQTFGIMVRTWGILWRPMEFGLGRVVEVVGAVVRLHNFCRDRQV 885
            V V+RKCVGAMDGLFVR I+P+ ++ AEPN YY+ HK GFGMNFQ +CDA+YRI+AWTM+ PG QNDRTAF F+ F++LL  LP  +F++GDAAY AS+RV+VP+PGT+L    DA N++ SQ R++IEQT+GI+VR WGILWRPME  + +   VV AVVRLHNFCRDR+V
Sbjct:   15 VDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKNGFGMNFQAVCDAQYRIVAWTMSCPGSQNDRTAFNFAWFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILVRRWGILWRPMEVRIEKFEHVVNAVVRLHNFCRDRKV 186          
BLAST of mRNA_P-littoralis_Contig1206.7.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE)

HSP 1 Score: 238 bits (606), Expect = 1.720e-73
Identity = 126/276 (45.65%), Postives = 161/276 (58.33%), Query Frame = 1
Query:   13 YIKPMPGDGTFKGRLRMHHVDFKILVDHLRSELERDTTMGALRNGAVPVEYQVGLTLRWLAGASMYEGMNGHVIARSTAYKTAFRVIKAINDCTELDCKWPATPEDVADKTAYFEKRCSVAVIRKCVGAMDGLFVRTIRPTTRDTAEPNSYYSRHKKGFGMNFQGICDAEYRIIAWTMNSPGRQNDRTAFKFSGFEQLLQDLPPDYFILGDAAYPASDRVLVPYPGTNLPTFHDAFNFWQSQGRISIEQTFGIMVRTWGILWRPMEFGLGRVVEVV 840
            +IKP+  D TF  R RM + DF++L+DHLR  L ++  MG LR GA+PVEYQ+ +TLRWLAG S+YE M+GHVIARSTAY     VI A+N C EL+CKWP    DV               +RKCVGAMDGLFVR I+P+ ++ AEPN YY+ H+KG                                                 ++GDAAY AS+RV+VP+PGT+L    DA N + SQ R++IEQT+GI+VR WGILWRPME  + +   VV
Sbjct:   60 HIKPLLQDHTFSVRFRMEYDDFRVLIDHLRPALHKNEKMGLLRIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEARMDV---------------VRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHRKGV------------------------------------------------VVGDAAYGASERVVVPFPGTSLSASQDACNNYVSQYRMAIEQTYGILVRRWGILWRPMEVRIEKFEHVV 272          
BLAST of mRNA_P-littoralis_Contig1206.7.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE)

HSP 1 Score: 226 bits (576), Expect = 6.320e-69
Identity = 127/291 (43.64%), Postives = 157/291 (53.95%), Query Frame = 1
Query:   13 YIKPMPGDGTFKGRLRMHHVDFKILVDHLRSELERDTTMGALRNGAVPVEYQVGLTLRWLAGASMYEGMNGHVIARSTAYKTAFRVIKAINDCTELDCKWPATPEDVADKTAYFEKRCSVAVIRKCVGAMDGLFVRTIRPTTRDTAEPNSYYSRHKKGFGMNFQGICDAEYRIIAWTMNSPGRQNDRTAFKFSGFEQLLQDLPPDYFILGDAAYPASDRVLVPYPGTNLPTFHDAFNFWQSQGRISIEQTFGIMVRTWGILWRPMEFGLGRVVEVVGAVVRLHNFCRDRQV 885
            YIKPM  D TF  R RM + DF++LVDHLR  L+++  MG LRNGA+PVEYQV +TLRWLAG S YE M+GHVIARSTAY                                                                                     +CDA+YRI+AW MN PG QNDRTAF FSGF++LL  LP  +F++GDAAY AS+RV+VP+PGT+L    DA N++ SQ R++IEQT+GI+V   G+    +E        VV AVVRLHNFCRDR+V
Sbjct:   60 YIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQKNEKMGLLRNGAIPVEYQVAMTLRWLAGGSTYECMDGHVIARSTAY-----------------------------------------------------------------------------------HAVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYMSQCRMAIEQTYGILVSVVGMAKVVVE-------HVVNAVVRLHNFCRDRKV 260          
BLAST of mRNA_P-littoralis_Contig1206.7.1 vs. uniprot
Match: A0A6H5L386_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L386_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 4.420e-62
Identity = 115/297 (38.72%), Postives = 167/297 (56.23%), Query Frame = 1
Query:    4 WPLYIKPMPGDGTFKGRLRMHHVDFKILVDHLRSELERDTTMGALR--NGAVPVEYQVGLTLRWLAGASMYEGMNGHVIARSTAYKTAFRVIKAINDCTELDCKW-PATPEDVADKTAYFEKRCSVAVIRKCVGAMDGLFVRTIRPTTRDTAEPNSYYSRHKKGFGMNFQGICDAEYRIIAWTMNSPGRQNDRTAFKFSGFEQLLQDLPPDYFILGDAAYPASDRVLVPYPGTNLPTFHDAFNFWQSQGRISIEQTFGIMVRTWGILWRPMEFGLGRVVEVVGAVVRLHNFCRDRQV 885
            W  +   +     FK   RM    F+ L + L   L  +     LR  NGA+ V+ ++ + LR LAGAS  +      +   T Y T + VI AIN   E+   + P T  D     A F+++ +  +   CV  +DGLFV+T+ P+ +DTA   +YYS  K  +G+N Q +C A+YR  + +  +PG  ND  A+  S   + +  LP  +++LGDAAYP S+++L PYPG NLP   D+FNF  SQ R+ IEQ+FGI+V TWGILWRP++       +++ A+ RLHNF RD QV
Sbjct:   70 WDEHADDLEERDCFKRMYRMPRHAFEKLAELLAPLLTVNKHFAELRTLNGAISVQIRLAVALRILAGASYLDVAVMFGLGLPTVYATLWMVIDAINSTPEVGAFFFPQTEFDCRGHAARFKRKSTNGIFSFCVACVDGLFVKTLAPSPKDTANVIAYYSGQKCAYGINVQAMCTADYRFCSMSAITPGATNDWAAWLRSKLSRAVNRLPKGFYVLGDAAYPLSEQLLTPYPGKNLPLGEDSFNFHLSQLRVKIEQSFGILVGTWGILWRPLKVDFAGRTDLITALFRLHNFLRDEQV 366          
BLAST of mRNA_P-littoralis_Contig1206.7.1 vs. uniprot
Match: A0A6H5JV75_9PHAE (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV75_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 1.660e-58
Identity = 101/250 (40.40%), Postives = 151/250 (60.40%), Query Frame = 1
Query:  139 RNGAVPVEYQVGLTLRWLAGASMYEGMNGHVIARSTAYKTAFRVIKAINDCTELD-CKWPATPEDVADKTAYFEKRCSVAVIRKCVGAMDGLFVRTIRPTTRDTAEPNSYYSRHKKGFGMNFQGICDAEYRIIAWTMNSPGRQNDRTAFKFSGFEQLLQDLPPDYFILGDAAYPASDRVLVPYPGTNLPTFHDAFNFWQSQGRISIEQTFGIMVRTWGILWRPMEFGLGRVVEVVGAVVRLHNFCRDRQV 885
            R GAV  + ++ + LR +AGAS  +      +++ TA+   ++V+ AIN   E+    +P + ++   + A +E++ +    +  V A DGLFV+T+ PT  +T    SYYS  K G+G+N Q  CDA YR  + +  +PG  ND TA+  S     +++LPP +++LGDAAYP SD +L PYPG  LP   DAFNF+ SQ R+ IEQ FGI+V  WGILW+P+        +++ A+ RLHNF RD +V
Sbjct:  124 RRGAVSTKIRLAIGLRMMAGASYIDAAMLFGVSKETAFSILWQVVDAINSTAEVGPFFFPQSEDECTRQAAEWEEKSTGGAFQGVVAAGDGLFVKTLAPTALNTPNVLSYYSGSKCGYGVNVQATCDANYRFCSMSCIAPGSTNDWTAWNHSDLSTAVKNLPPGFYMLGDAAYPLSDHLLTPYPGRGLPLDKDAFNFYLSQLRVRIEQAFGILVGQWGILWKPLRVQFAGRCDLITALFRLHNFLRDEKV 373          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1206.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3F2_9PHAE6.770e-12460.54DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L6B6_9PHAE2.840e-12063.06DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5K6M2_9PHAE2.980e-11959.66DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JJA1_9PHAE1.480e-10254.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCG0_9PHAE2.400e-8858.41DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KNF2_9PHAE2.310e-7864.53DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5JVS8_9PHAE1.720e-7345.65DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K540_9PHAE6.320e-6943.64DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L386_9PHAE4.420e-6238.72DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JV75_9PHAE1.660e-5840.40DDE Tnp4 domain-containing protein n=4 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1206contigP-littoralis_Contig1206:22931..24776 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4792.ETI53028
PFAMsDDE_Tnp_4
Model size885
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.68e-42
EggNOG OGsKOG4585@1|root,KOG4585@2759|Eukaryota,3QI3U@4776|Peronosporales
Descriptionnuclease activity
Cds size861
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789517.2725267-UTR-P-littoralis_Contig1206:22930..229541680789517.2725267-UTR-P-littoralis_Contig1206:22930..22954Pylaiella littoralis U1_48UTRP-littoralis_Contig1206 22931..22954 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789517.2838051-CDS-P-littoralis_Contig1206:22954..234341680789517.2838051-CDS-P-littoralis_Contig1206:22954..23434Pylaiella littoralis U1_48CDSP-littoralis_Contig1206 22955..23434 +
1680789517.2923026-CDS-P-littoralis_Contig1206:23845..241151680789517.2923026-CDS-P-littoralis_Contig1206:23845..24115Pylaiella littoralis U1_48CDSP-littoralis_Contig1206 23846..24115 +
1680789517.3049188-CDS-P-littoralis_Contig1206:24665..247761680789517.3049188-CDS-P-littoralis_Contig1206:24665..24776Pylaiella littoralis U1_48CDSP-littoralis_Contig1206 24666..24776 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1206.7.1prot_P-littoralis_Contig1206.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1206 22955..24776 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1206.7.1

>prot_P-littoralis_Contig1206.7.1 ID=prot_P-littoralis_Contig1206.7.1|Name=mRNA_P-littoralis_Contig1206.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=287bp
MPGDGTFKGRLRMHHVDFKILVDHLRSELERDTTMGALRNGAVPVEYQVG
LTLRWLAGASMYEGMNGHVIARSTAYKTAFRVIKAINDCTELDCKWPATP
EDVADKTAYFEKRCSVAVIRKCVGAMDGLFVRTIRPTTRDTAEPNSYYSR
HKKGFGMNFQGICDAEYRIIAWTMNSPGRQNDRTAFKFSGFEQLLQDLPP
DYFILGDAAYPASDRVLVPYPGTNLPTFHDAFNFWQSQGRISIEQTFGIM
VRTWGILWRPMEFGLGRVVEVVGAVVRLHNFCRDRQV
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mRNA from alignment at P-littoralis_Contig1206:22931..24776+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1206.7.1 ID=mRNA_P-littoralis_Contig1206.7.1|Name=mRNA_P-littoralis_Contig1206.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1846bp|location=Sequence derived from alignment at P-littoralis_Contig1206:22931..24776+ (Pylaiella littoralis U1_48)
GCGTGGCCTCTTTACATCAAGCCCATGCCAGGAGACGGGACCTTCAAGGG GCGCTTGCGCATGCACCATGTCGACTTCAAGATCCTGGTTGATCATCTTC GGTCGGAGCTGGAGAGAGACACTACGATGGGAGCCCTCCGGAACGGCGCC GTTCCGGTCGAGTATCAGGTCGGTTTGACCCTCCGCTGGTTGGCTGGTGC GTCCATGTACGAAGGCATGAACGGGCATGTCATCGCTAGGAGTACCGCAT ACAAGACAGCGTTTCGCGTTATCAAGGCCATCAACGACTGTACTGAGCTG GACTGCAAGTGGCCCGCCACGCCGGAGGACGTCGCCGACAAGACCGCTTA CTTCGAGAAACGCTGCTCAGTCGCTGTTATCCGGAAATGCGTCGGGGCTA TGGACGGGCTCTTTGTCCGCACCATCAGACCGACCACCAGAGATACAGCC GAACCGAACAGCTACTACAGCCGTCACAAGAAGGGATTCGGCATGAACTT CCAGGTACACACTACGAAATCTGAAGTAGAAGGGCGTCTTTTGTTTTCAT CTACCCACCTCTCTCTCTCTCTCTCTCTCTACAATAAATATGGCCTTGAT CTCATAAAAACATAGGGATCCGTATTTGATGCTCTGGTGCACTCTGCAAG TACAGCAGTACATTTACGTATGCACTACTGCTGTAATGTGCATGACACAC CTTAACAACTACAACTGCTGCAGCCCCTTCCGAATACGGACATGCCGCCT GACAAAAGAGAACATGCATGTATGACAAAATTTGCAAATGCGGTGATGAG GCCATGTGGTAACCGCGGATGGCTGAAGTGCACATCGATCCGCTGTCCTA CTCGATGTGAGCATGTGTCCCCAAAACTGAACTGTTCGCGAACTCTTGGC CTCTCACTTATACAGGGGATCTGCGACGCGGAGTACAGGATCATCGCATG GACCATGAACAGTCCCGGGCGCCAAAACGACCGCACGGCCTTCAAGTTTT CCGGGTTCGAACAGCTCCTCCAGGACTTGCCCCCGGACTACTTCATCCTG GGCGACGCGGCGTACCCCGCTTCCGACCGCGTCCTGGTCCCGTACCCCGG GACAAACCTGCCAACGTTCCACGACGCCTTCAACTTCTGGCAGTCTCAGG GGCGGATCTCCATCGAGCAGACCTTCGGCATAATGGTGAGTGCTCAACCC TTCAGCTGCTGAACTTCCAAACGACGACCATTCGGGGACACCTATTTTGT GTAGCTGAGCTTGTTTGTGTGCGATCTCGAGGTATCTTGCGTGTCGACGA TTTCGCCCATTTCTCTTTGATTTCCCTGCCGCGCGCGGTCCAGCACTGAC TGTCAGCTAAAGTACAAGTTTTTATCGTGGGCTGCTGCGATTCAAAAAAT TTCACCGTTTGAAAGTCATGCGGGTAGCCTTGGTCCCCGCTTGCTGGTGG TCCTCACTGCTGCTGTGCTGTTTCGGGGAGATTAGGACAGCTCCCAGTGT AGGACCAAGTCGCAATTTTGTTCGAGCGGCAGGGTAAGCGAGACGCGTGT TTTATTTTTTAGAGCTGTGCGATTGGGGTCGATCACAGCTGTGAGCACAC ACTTTCGACGAGCAAACTTCGTGATTTTCTCTTTTGTCTGCTTATTTCAA TTGTCTCTTTTCCTGCCAAGTAGTCGGAGACCATCCAACACCCACACCCG ACGCCGTTCTTTCCCTGTGCTTGATATTTAAAAAGGTCCGGACGTGGGGA ATCCTTTGGCGCCCCATGGAGTTTGGGCTGGGGCGGGTTGTTGAAGTGGT GGGGGCCGTCGTTCGCCTGCACAACTTCTGCAGGGATCGGCAGGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1206:22931..24776+

>mRNA_P-littoralis_Contig1206.7.1 ID=mRNA_P-littoralis_Contig1206.7.1|Name=mRNA_P-littoralis_Contig1206.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=861bp|location=Sequence derived from alignment at P-littoralis_Contig1206:22931..24776+ (Pylaiella littoralis U1_48)
ATGCCAGGAGACGGGACCTTCAAGGGGCGCTTGCGCATGCACCATGTCGA
CTTCAAGATCCTGGTTGATCATCTTCGGTCGGAGCTGGAGAGAGACACTA
CGATGGGAGCCCTCCGGAACGGCGCCGTTCCGGTCGAGTATCAGGTCGGT
TTGACCCTCCGCTGGTTGGCTGGTGCGTCCATGTACGAAGGCATGAACGG
GCATGTCATCGCTAGGAGTACCGCATACAAGACAGCGTTTCGCGTTATCA
AGGCCATCAACGACTGTACTGAGCTGGACTGCAAGTGGCCCGCCACGCCG
GAGGACGTCGCCGACAAGACCGCTTACTTCGAGAAACGCTGCTCAGTCGC
TGTTATCCGGAAATGCGTCGGGGCTATGGACGGGCTCTTTGTCCGCACCA
TCAGACCGACCACCAGAGATACAGCCGAACCGAACAGCTACTACAGCCGT
CACAAGAAGGGATTCGGCATGAACTTCCAGGGGATCTGCGACGCGGAGTA
CAGGATCATCGCATGGACCATGAACAGTCCCGGGCGCCAAAACGACCGCA
CGGCCTTCAAGTTTTCCGGGTTCGAACAGCTCCTCCAGGACTTGCCCCCG
GACTACTTCATCCTGGGCGACGCGGCGTACCCCGCTTCCGACCGCGTCCT
GGTCCCGTACCCCGGGACAAACCTGCCAACGTTCCACGACGCCTTCAACT
TCTGGCAGTCTCAGGGGCGGATCTCCATCGAGCAGACCTTCGGCATAATG
GTCCGGACGTGGGGAATCCTTTGGCGCCCCATGGAGTTTGGGCTGGGGCG
GGTTGTTGAAGTGGTGGGGGCCGTCGTTCGCCTGCACAACTTCTGCAGGG
ATCGGCAGGTG
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