mRNA_P-littoralis_Contig887.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig887.9.1
Unique NamemRNA_P-littoralis_Contig887.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig887.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig887contigP-littoralis_Contig887:9874..10282 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size409
Hectar predicted targeting categoryother localisation
Exons1
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791774.0027683-CDS-P-littoralis_Contig887:9873..102661680791774.0027683-CDS-P-littoralis_Contig887:9873..10266Pylaiella littoralis U1_48CDSP-littoralis_Contig887 9874..10266 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791774.0202127-UTR-P-littoralis_Contig887:10266..102821680791774.0202127-UTR-P-littoralis_Contig887:10266..10282Pylaiella littoralis U1_48UTRP-littoralis_Contig887 10267..10282 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig887.9.1prot_P-littoralis_Contig887.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig887 9874..10266 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig887.9.1

>prot_P-littoralis_Contig887.9.1 ID=prot_P-littoralis_Contig887.9.1|Name=mRNA_P-littoralis_Contig887.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp
MADPTGGGAAQPVSQPTEPSSRLIIGGVPVQVVGAGKGRSKQTSAIWKHV
VEFTPATASGKNIKCMVKHKLPAVNNVPAREVTCGFLMKYVRADASKGIS
SGGTNGMWKHFRDKHKHIREEEMPKSSHSTE
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mRNA from alignment at P-littoralis_Contig887:9874..10282-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig887.9.1 ID=mRNA_P-littoralis_Contig887.9.1|Name=mRNA_P-littoralis_Contig887.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=409bp|location=Sequence derived from alignment at P-littoralis_Contig887:9874..10282- (Pylaiella littoralis U1_48)
CACGAACACACACTCTATGGCGGACCCTACCGGCGGCGGCGCTGCCCAGC
CTGTGTCACAGCCAACAGAGCCATCCAGTCGGTTGATAATTGGCGGTGTT
CCCGTACAAGTGGTCGGTGCTGGGAAAGGGAGAAGCAAGCAGACCTCTGC
GATTTGGAAGCATGTCGTAGAGTTCACGCCAGCCACGGCAAGTGGCAAGA
ACATCAAGTGCATGGTCAAACACAAGCTTCCCGCGGTGAACAACGTTCCA
GCACGCGAAGTGACGTGCGGCTTCTTGATGAAGTACGTCCGAGCTGACGC
CAGCAAAGGGATCTCCAGCGGAGGGACGAACGGCATGTGGAAGCACTTCC
GCGACAAGCACAAACACATCCGCGAGGAAGAGATGCCAAAGAGCTCGCAC
AGCACCGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig887:9874..10282-

>mRNA_P-littoralis_Contig887.9.1 ID=mRNA_P-littoralis_Contig887.9.1|Name=mRNA_P-littoralis_Contig887.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig887:9874..10282- (Pylaiella littoralis U1_48)
ATGGCGGACCCTACCGGCGGCGGCGCTGCCCAGCCTGTGTCACAGCCAAC
AGAGCCATCCAGTCGGTTGATAATTGGCGGTGTTCCCGTACAAGTGGTCG
GTGCTGGGAAAGGGAGAAGCAAGCAGACCTCTGCGATTTGGAAGCATGTC
GTAGAGTTCACGCCAGCCACGGCAAGTGGCAAGAACATCAAGTGCATGGT
CAAACACAAGCTTCCCGCGGTGAACAACGTTCCAGCACGCGAAGTGACGT
GCGGCTTCTTGATGAAGTACGTCCGAGCTGACGCCAGCAAAGGGATCTCC
AGCGGAGGGACGAACGGCATGTGGAAGCACTTCCGCGACAAGCACAAACA
CATCCGCGAGGAAGAGATGCCAAAGAGCTCGCACAGCACCGAA
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