mRNA_P-littoralis_Contig886.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig886.25.1
Unique NamemRNA_P-littoralis_Contig886.25.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig886.25.1 vs. uniprot
Match: A0A6H5LAI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAI5_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 1.190e-5
Identity = 21/27 (77.78%), Postives = 23/27 (85.19%), Query Frame = 1 
Query:    1 TFDACGSHSTVEGRYHHHGTPGCFLEE 81
            TFDAC SHST EG YH HGTPGCF+E+
Sbjct:  229 TFDACASHSTTEGHYHTHGTPGCFMEQ 255
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig886.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LAI5_9PHAE1.190e-577.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig886contigP-littoralis_Contig886:92649..93418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LCJ5
PFAMsYHYH
Model size432
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.72e-05
EggNOG OGs2CZR0@1|root,2SBB2@2759|Eukaryota
DescriptionYHYH protein
Cds size210
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791773.8250976-UTR-P-littoralis_Contig886:92648..926701680791773.8250976-UTR-P-littoralis_Contig886:92648..92670Pylaiella littoralis U1_48UTRP-littoralis_Contig886 92649..92670 -
1680791773.8409703-UTR-P-littoralis_Contig886:93008..932081680791773.8409703-UTR-P-littoralis_Contig886:93008..93208Pylaiella littoralis U1_48UTRP-littoralis_Contig886 93009..93208 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791773.8523319-CDS-P-littoralis_Contig886:93208..934181680791773.8523319-CDS-P-littoralis_Contig886:93208..93418Pylaiella littoralis U1_48CDSP-littoralis_Contig886 93209..93418 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig886.25.1prot_P-littoralis_Contig886.25.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig886 93209..93418 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig886.25.1

>prot_P-littoralis_Contig886.25.1 ID=prot_P-littoralis_Contig886.25.1|Name=mRNA_P-littoralis_Contig886.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=70bp
TFDACGSHSTVEGRYHHHGTPGCFLEEVGARSGFWTPRSCYASSMRATTM
SIVMSMTERRPMKGRRCCT*
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mRNA from alignment at P-littoralis_Contig886:92649..93418-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig886.25.1 ID=mRNA_P-littoralis_Contig886.25.1|Name=mRNA_P-littoralis_Contig886.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=770bp|location=Sequence derived from alignment at P-littoralis_Contig886:92649..93418- (Pylaiella littoralis U1_48)
ACCTTCGATGCCTGTGGCTCACACTCAACTGTGGAAGGTCGCTACCACCA
CCACGGAACTCCAGGTTGCTTTTTGGAAGAGGTGGGAGCACGGAGCGGTT
TTTGGACGCCCCGCTCGTGCTACGCTTCATCGATGCGTGCTACCACGATG
AGCATTGTAATGTCTATGACTGAGCGTAGACCGATGAAAGGACGGCGCTG
CTGTACGTGAGCGCCGGAAGGCTCTTGGTGGTGCTGTCAGTGAATTTTAT
GGTGCAATACCGGCGGAATGTTTGATGTGCTTTGGGTGACTTGGTCGCGG
TCTCGAAACTGCTGTTTGGTGGTAATCTCACCCTTGCTTTCACCGTACAG
GTGATGAAGTTCGAGGGGAAAAGCTACGACGACCACTCTCCTCGTCTCGG
CTATATGTTTGTAAGTGGTCTTGTTTTCTCCCTGATTGTTCGATGTGCAT
CGTTGTCGTCGGATAGTCAAACGTATCTCCAACAACTCCAAATGGTCACA
ACCAGAACCACCAACGCGGTAAACACAACATGTATGTCTGTATGGCTTTT
TCGACTTGCACGTACTTGAGTTTGTTTTTTTTGGCAAGAGCGTTGAGGAA
GGCGCAACACATGTGATGACTGCCTGGCAAGATGAAATACGATTTCGACG
GAACACATCGAAGGAAATTTGTAAGAAGACCCATCGGAACACTTCTTTTT
CCTTGCGTCTTCCTGTCGTTCGTTGTTTTACGTGCTGGCTTCCTGCAGGA
CGGCCTTCCGGCGTATGGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig886:92649..93418-

>mRNA_P-littoralis_Contig886.25.1 ID=mRNA_P-littoralis_Contig886.25.1|Name=mRNA_P-littoralis_Contig886.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=210bp|location=Sequence derived from alignment at P-littoralis_Contig886:92649..93418- (Pylaiella littoralis U1_48)
ACCTTCGATGCCTGTGGCTCACACTCAACTGTGGAAGGTCGCTACCACCA
CCACGGAACTCCAGGTTGCTTTTTGGAAGAGGTGGGAGCACGGAGCGGTT
TTTGGACGCCCCGCTCGTGCTACGCTTCATCGATGCGTGCTACCACGATG
AGCATTGTAATGTCTATGACTGAGCGTAGACCGATGAAAGGACGGCGCTG
CTGTACGTGA
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