mRNA_P-littoralis_Contig886.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig886.7.1
Unique NamemRNA_P-littoralis_Contig886.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig886.7.1 vs. uniprot
Match: A0A6H5LQJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQJ9_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.170e-18
Identity = 38/65 (58.46%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:    4 AELFQVVPGYYAAMTVKESGETFSNEEKMAAAVRHYEVFTAMAFLRWLTETADFSNSPAWLDKDI 198
            A LFQ +PG+Y AM+VKESG+ +S  E+ A AV+ Y+ F   AFLRWL E  DF+N+PAWL KDI
Sbjct:   35 ASLFQFLPGFYVAMSVKESGKCYSEPERNAGAVKVYKSFAVPAFLRWLVEEYDFTNTPAWLTKDI 99
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BLAST of mRNA_P-littoralis_Contig886.7.1 vs. uniprot
Match: A0A6H5KUY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY0_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 5.930e-17
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    4 AELFQVVPGYYAAMTVKESGETFSNEEKMAAAVRHYEVFTAMAFLRWLTETADFSNSPAWLDKDI 198
            A LFQ +PG+YA M+VKESG+ +S  ++ A AV+ Y+ F   AFLRWL E  DF+ +PAWL KDI
Sbjct:   35 ASLFQFLPGFYAGMSVKESGKCYSESDRNAEAVKVYKSFAVPAFLRWLVEKYDFTTTPAWLTKDI 99
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BLAST of mRNA_P-littoralis_Contig886.7.1 vs. uniprot
Match: A0A6H5KJ61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ61_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 9.600e-8
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    4 AELFQVVPGYYAAMTVKESGETFSNEEKMAAAVRHYEVFTAMAFLRWL 147
            A L Q +PG+Y AM+VKESG+ +S  ++ A AV+ Y+ F   AFLRWL
Sbjct:   35 ASLSQFLPGFYVAMSVKESGKCYSEPDRNAEAVKVYKSFAVPAFLRWL 82
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig886.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LQJ9_9PHAE1.170e-1858.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUY0_9PHAE5.930e-1755.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJ61_9PHAE9.600e-852.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig886contigP-littoralis_Contig886:27404..27603 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size202
Hectar predicted targeting categoryother localisation
Exons1
Cds size198
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791773.6631908-CDS-P-littoralis_Contig886:27405..276031680791773.6631908-CDS-P-littoralis_Contig886:27405..27603Pylaiella littoralis U1_48CDSP-littoralis_Contig886 27406..27603 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig886.7.1prot_P-littoralis_Contig886.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig886 27406..27603 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig886.7.1

>prot_P-littoralis_Contig886.7.1 ID=prot_P-littoralis_Contig886.7.1|Name=mRNA_P-littoralis_Contig886.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=66bp
EAELFQVVPGYYAAMTVKESGETFSNEEKMAAAVRHYEVFTAMAFLRWLT
ETADFSNSPAWLDKDI
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mRNA from alignment at P-littoralis_Contig886:27404..27603-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig886.7.1 ID=mRNA_P-littoralis_Contig886.7.1|Name=mRNA_P-littoralis_Contig886.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=200bp|location=Sequence derived from alignment at P-littoralis_Contig886:27404..27603- (Pylaiella littoralis U1_48)
GAAGCTGAGCTGTTCCAGGTGGTACCCGGGTACTATGCAGCGATGACCGT
GAAGGAGAGTGGCGAAACCTTCAGCAATGAAGAAAAGATGGCGGCCGCGG
TCCGTCACTACGAGGTCTTCACCGCCATGGCCTTTCTGCGGTGGTTGACC
GAGACCGCCGATTTCTCAAACTCTCCTGCCTGGTTGGACAAGGATATCAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig886:27404..27603-

>mRNA_P-littoralis_Contig886.7.1 ID=mRNA_P-littoralis_Contig886.7.1|Name=mRNA_P-littoralis_Contig886.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=198bp|location=Sequence derived from alignment at P-littoralis_Contig886:27404..27603- (Pylaiella littoralis U1_48)
GAAGCTGAGCTGTTCCAGGTGGTACCCGGGTACTATGCAGCGATGACCGT
GAAGGAGAGTGGCGAAACCTTCAGCAATGAAGAAAAGATGGCGGCCGCGG
TCCGTCACTACGAGGTCTTCACCGCCATGGCCTTTCTGCGGTGGTTGACC
GAGACCGCCGATTTCTCAAACTCTCCTGCCTGGTTGGACAAGGATATC
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