mRNA_P-littoralis_Contig885.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig885.5.1
Unique NamemRNA_P-littoralis_Contig885.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig885.5.1 vs. uniprot
Match: A0A6H5JIG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG7_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 3.530e-64
Identity = 108/183 (59.02%), Postives = 130/183 (71.04%), Query Frame = 2 
Query:  140 VLSHHVSSEDNARDEKYDFSLPGPKKQRAYEGSLKRHVFVDPTAKALCKHANSADGGGRGVPIRINGDGACFPNAVALGVFGAKCETPNEALRLSLAVRVAIIRAAVRDMPEFISGPQYGEFYCTLQAYDAKVTDSVWEPGYDTPEVLTESVARVLYLLPIRAIAGEFKDCQQACVPWTAQAF 688
            ++ H  S +D    E  D  LPG      YEG L+R + VD TA+ L      ADGGGRGVP+++ G+GAC+ NAV LG+FG KC TP+EAL LSL+VRVA+IRAA+    EFISGP+YG FYCTLQAY AK   + W  G DTPEVLTESV+RVLYLL +R +AGEF D QQA +PWTAQAF
Sbjct:   41 IIQHAKSFKDVLCSEDTDVILPG------YEGLLRRPMRVDRTAEDLLNGGEGADGGGRGVPVKVRGNGACYFNAVPLGIFGTKCNTPDEALGLSLSVRVAVIRAAIVHFEEFISGPEYGGFYCTLQAYSAKEVKAAWSLGCDTPEVLTESVSRVLYLLAVREVAGEFSDSQQAAMPWTAQAF 217
[Close]
BLAST of mRNA_P-littoralis_Contig885.5.1 vs. uniprot
Match: A0A6H5JS69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS69_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 4.370e-57
Identity = 103/182 (56.59%), Postives = 123/182 (67.58%), Query Frame = 2 
Query:  143 LSHHVSSEDNARDEKYDFSLPGPKKQRAYEGSLKRHVFVDPTAKALCKHANSADGGGRGVPIRINGDGACFPNAVALGVFGAKCETPNEALRLSLAVRVAIIRAAVRDMPEFISGPQYGEFYCTLQAYDAKVTDSVWEPGYDTPEVLTESVARVLYLLPIRAIAGEFKDCQQACVPWTAQAF 688
              H + S+D       D  LPG      YEG L+R + VD TA+AL   A+SADGG RG  I+   + AC+ NAVALG FGA+ +TP+EAL LSL+VRVA+IRAA+  +  FISGP YG FYCTLQAY AK  +  W  G   PEVLTESVARVLYLL +R +AGEF D QQA +PW AQAF
Sbjct:   54 FKHVLGSQDT------DVILPG------YEGLLRRPMLVDATAQALLNEADSADGGTRGSTIKTCANNACYFNAVALGGFGARYKTPDEALELSLSVRVAVIRAALVHLQTFISGPGYGGFYCTLQAYSAKEVEGAWRLGCSKPEVLTESVARVLYLLAVREVAGEFSDSQQAAIPWIAQAF 223
[Close]
BLAST of mRNA_P-littoralis_Contig885.5.1 vs. uniprot
Match: A0A6H5KUZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ3_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 1.510e-50
Identity = 92/146 (63.01%), Postives = 109/146 (74.66%), Query Frame = 2 
Query:  251 VFVDPTAKALCKHANSADGGGRGVPIRINGDGACFPNAVALGVFGAKCETPNEALRLSLAVRVAIIRAAVRDMPEFISGPQYGEFYCTLQAYDAKVTDSVWEPGYDTPEVLTESVARVLYLLPIRAIAGEFKDCQQACVPWTAQAF 688
            + VD TA+AL   A+SADGG RG  I+   + AC+ NAVALG  GA+ +TP+EAL LSL+VRVA+IRAA+  +  FISGP YG FYCTLQAY AK  +  W  GY TPEVLTESVARVLYLL +R +A EF D QQA +PWTAQAF
Sbjct:    1 MLVDATAQALLNEADSADGGTRGSTIKTCANNACYFNAVALGGVGARYKTPDEALELSLSVRVAVIRAALVHLQTFISGPGYGGFYCTLQAYSAKEVEGAWRLGYSTPEVLTESVARVLYLLAVREVACEFSDSQQAAIPWTAQAF 146
[Close]
BLAST of mRNA_P-littoralis_Contig885.5.1 vs. uniprot
Match: A0A6H5JM74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM74_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 4.720e-12
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 2 
Query:  560 GYDTPEVLTESVARVLYLLPIRAIAGEFKDCQQACVPWTAQAF 688
            G  TPEVLTESVARVLYLL +R +AGEF D QQA +PWTAQAF
Sbjct:   45 GASTPEVLTESVARVLYLLAVREVAGEFSDSQQAAIPWTAQAF 87
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig885.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JIG7_9PHAE3.530e-6459.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS69_9PHAE4.370e-5756.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUZ3_9PHAE1.510e-5063.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JM74_9PHAE4.720e-1276.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig885contigP-littoralis_Contig885:21495..25259 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size690
Hectar predicted targeting categoryother localisation
Exons3
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791772.8972468-CDS-P-littoralis_Contig885:21494..217161680791772.8972468-CDS-P-littoralis_Contig885:21494..21716Pylaiella littoralis U1_48CDSP-littoralis_Contig885 21495..21716 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791772.911149-UTR-P-littoralis_Contig885:21716..219591680791772.911149-UTR-P-littoralis_Contig885:21716..21959Pylaiella littoralis U1_48UTRP-littoralis_Contig885 21717..21959 -
1680791772.9261682-UTR-P-littoralis_Contig885:22373..225371680791772.9261682-UTR-P-littoralis_Contig885:22373..22537Pylaiella littoralis U1_48UTRP-littoralis_Contig885 22374..22537 -
1680791772.9365559-UTR-P-littoralis_Contig885:25200..252591680791772.9365559-UTR-P-littoralis_Contig885:25200..25259Pylaiella littoralis U1_48UTRP-littoralis_Contig885 25201..25259 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig885.5.1prot_P-littoralis_Contig885.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig885 21495..21716 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig885.5.1

>prot_P-littoralis_Contig885.5.1 ID=prot_P-littoralis_Contig885.5.1|Name=mRNA_P-littoralis_Contig885.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=74bp
MPEFISGPQYGEFYCTLQAYDAKVTDSVWEPGYDTPEVLTESVARVLYLL
PIRAIAGEFKDCQQACVPWTAQAF
back to top

mRNA from alignment at P-littoralis_Contig885:21495..25259-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig885.5.1 ID=mRNA_P-littoralis_Contig885.5.1|Name=mRNA_P-littoralis_Contig885.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3765bp|location=Sequence derived from alignment at P-littoralis_Contig885:21495..25259- (Pylaiella littoralis U1_48)
CGAAGAACGAGGAAGCGCGGAGGCAATGGGATGCGCTGGAGGCGGCAACG
GGGGCCGAGGTATGTGAAAAGCGTTGGAATTCGTACTGGGTACGCTTGTT
TTTCAGTTCCTCTGTGTACTGTACTTGTTTCCCCATATTGTAGCACTGCT
GCAGCTGTAGACTAATACTCCAGTATGAAGTATGCGAATGGCGCTGCTGG
GTGTGCGCACTGCTGTACAACAGCAGTAGCTCCGTTGGTGTGTGTTTCTT
ATCGCCATAGTTTTGAGTACATCGGGCCCCAAACAGACGGCGTCACTGCA
GAGTGCGTGCGGTTGTCGTCGTCATGAAGGGCAGGTAAGTCAACGGGTGC
TTGTATGTCTCTTTGTGGTCGAGAGGGAGAATGAGCGGTCCGACTTCCGT
TTTTCCGGCATGTATGAAGACTTCGAACAAAATGAGGGTGCGTGCTGTAG
TGTGTATAAAACGACAGGCAGGCGTTGAGGTTTCTCGCCAATCAGGCCCA
CTTTTGATGAGAAGTGAACACAGGTATCATATCATGAGACACGTTCAAAA
CGCGGCGATTAATATGAATCGGCCCCAACAACCAAAATAAGACATTAATC
GGGTTTTAAATCGCTGAGGTTATCAACTTCCAGTTCAATGGATTTTGCTT
CACGACCACCAGAAAAGGGATTGGAGCTCCAGAGCCCCAAACAACTTGTA
ATCAAGTCTTGTGGCGGTCTGGTTGGTCTGTTGGGAGCACCCTCTCTACG
TGTGTGTTTGTGCGCGCGCGTGTGTGTGTATGCTGTGCTGGTACACACCA
AAAAAGAACATACACCAAATCATGCACCACACATATATGCACACACCCGG
ACACACAGCAGCAGCAGTGGGCGGGCACCATGAACTGTAGCGAGAGGGTG
CGTGGTGCGTAAGGCAGACATAAATGGCGCCGACGACAATCAATCCTGTC
GCTGTGCTGCCGGTGTAAGGCGTGCACATATATCATGACGACCAGACACT
GCAGCAGCAGCCACAGCAGCAGCAGTAATAACGGAGGGGCGGGCCCAGAA
AGCTTTTTGACAAGTATACTGCTGCTGTCCCTTTTTCCCTTGTCTTGTCC
TCGCCCCTTGCGTCGTGGCGTGGGTGTTATTGTGGGTTGCCAACGTGCTC
AGTTTGCCAACGTGCTCAGTCCCGTTCATTTACTTGTTGATTCTCACAAA
AGCAGGCAGTTTACACCGCCGTGCAACACACGATCGGGCGCCTACACTTT
AATCAAGTGATGCGGGCTGTGTTGGTCCAGTATAGGGCAGGGTCATAAAG
AGGTTCACTAAATGAACATTCTCAAGATACACGTTTTAGTATCAGACTTC
CATCCTCTCCACTTGAAAGATGCGATTATTCGCATTTTTAGTGTAGCGTG
AGTTTTAAATCGGAGGCCAAAGTCGGCGAAAAATGGATGTAGCGACAATG
GTTGGAAAGTGTTCCTCCTACCTGTAAATCGAGTTTCGAATGACTCTATA
GATGTAAATAATTTGTGATGGCCTCCGACGAGCTTCCTCGTGTTTCGCAT
TCTTCTTCATTATTCGCGACATCATCACTCACTGCTACTGCTGCTACTGC
TGCTGCTGCTGCGCAGTTTGTGTACTCGCCCGCTCTCCTCGCGGAGCTTG
CCTCTCAGATGTATTCGCCGAAATAACAATTGTCCTCGTACTCGGTGTAT
ACTTCTTCGAATTACCCAGTACGTCGCCGAGATCGGAAGCGAGATCGAGA
TGGAGATCGAGACCGGCCATTTTTTAAGAGATCGAGAAAAGATCGAACAT
CGGCGTTTTTGTTGTGCCGATCTCTAAAAACCAGATCGGCCTGATTTTGC
CGGCAATCTGCAACACTGACGCGTGGGTTTTAAAGAAACGCGCACGGTTA
ACGGTTGGAAAATATCTGGAAAATGTGTTGGACGGCGTGCATGCTGTGAG
ATATTCACCTCTCTCTCTTTTATTGCCTTCCAAACTCTAGCACAGCTCCA
CCCGAACATATGGAAGCCATAAGACTAACAGCAGCAGAAACGACACACAA
CACGCACACGCACCGCCACAGCAGTTGAAGCAACACCATAGCACACGCAC
GAACGCGTTGTTTATCTCTCTCCACCCCCCAATCCCTCTCTCTCTCGGCC
CCCCCGCACGGCATGAACACACCACTAAGGTGTGTTTGTGACTACCCCCT
GTCAATAACACACCGAACAGCGGCACCGGCAGCAGCATCACACAACACGC
GTACACGCACACACGCAGTGGCTGCGTGCGGTGTGCGGTGTTGACTAGTT
GCACGCTGTGTTCTCTTTCGCTTTTAAGACTCTTTCAGGCGCTCCCTCCG
TGCGTGTTATATGTGATAGAGTTGCTGCTGCCCTGTCCATTTCTCTTGCT
CTCTCCCTCTCTTTCAGCGTATGGCATAGGGGTTTTGTGAGCACGTGTGC
GCAGCACCTTGTCAAGCTTTCACGCCTCCCTCAACTACTGTCGACAGAAC
AAAAAAAATACGGCAGCTGTAACAGTGGGAGCCGCAGCAGTAGCACCTAC
GTCTTGACGCTCTGGCGTCGTACGAGCGAAACTTGTGGAGGCGACCCAAA
TACAACGCGCTTCGTTGTTTTTTTATGTTTTGTTGAACGAGGATACTCAC
TCACCGCTGTTACCGATAAATCTCTCATGCCTTTCCATGTTTCTCCTTTC
CCTTCTCAATCCGCGTGAACAGTTCATGGATTCCCTGTATGATCTATCAC
TATTGGGCAGGAGGACGCGCGTAGCCAAGCAAGAAGGGACGATATCAAGG
AAGTCCTCTCTCACCACGTCTCCTCCGAGGACAACGCCCGAGACGAGAAG
TACGACTTCTCCCTCCCTGGCCCAAAGAAGCAACGGGTATGTAGGACATA
CCAAGTAGTGTTCCAAATGCGTGATAGTTCCCGACGCCCCTGTCGACTAG
CTGTTGCTGCCAATGTTGCTTCTTGTCGACGGATTTATTGCGGCACACCA
GAGCATTCAGACCCCGGGCGGACGGTGTCAAATGAACGGCGTAATTTGAA
GTCTCCATCACAATGAGGCTTATGGAATCGGCGAAGCACTTGGTACAACA
ATGTTCTGAAAACACGGCGGAGTTTGGCTGATGCACAGCTTTGGAGCAGT
GACGAATTAACCACGCCAATAAAAACATTTTTGTGCAAAAAAACTCTCTG
CTGTCTCCGTCGCAAGACTTCGTTTTTTTTTTTTTTTCGTAGCACTTACC
CTAGGCATGCCCGGTAAACGGTACCGCCATCCCTCCTATGCTGTTACCAG
GCCTACGAGGGTTCTTTGAAGCGGCATGTGTTCGTGGATCCCACGGCAAA
GGCCCTCTGTAAACATGCGAACAGTGCGGACGGTGGGGGCAGGGGGGTGC
CTATCAGGATAAACGGAGATGGTGCTTGCTTCCCAAACGCAGTGGCGCTA
GGGGTCTTCGGTGCGAAGTGCGAAACCCCGAACGAAGCGTTGCGGTTGTC
GCTTGCTGTCCGTGTGGCCATCATTCGGGCGGCCGTCCGGGACATGCCGG
AATTCATCAGCGGCCCTCAGTATGGGGAGTTCTACTGCACGCTGCAGGCG
TACGACGCCAAAGTTACCGACTCCGTTTGGGAGCCCGGGTACGATACCCC
AGAGGTGTTGACAGAGAGCGTCGCGCGTGTTCTTTACCTCCTTCCTATAC
GAGCCATCGCTGGTGAGTTCAAGGACTGCCAACAGGCATGCGTTCCATGG
ACGGCGCAGGCATTC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig885:21495..25259-

>mRNA_P-littoralis_Contig885.5.1 ID=mRNA_P-littoralis_Contig885.5.1|Name=mRNA_P-littoralis_Contig885.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=222bp|location=Sequence derived from alignment at P-littoralis_Contig885:21495..25259- (Pylaiella littoralis U1_48)
ATGCCGGAATTCATCAGCGGCCCTCAGTATGGGGAGTTCTACTGCACGCT
GCAGGCGTACGACGCCAAAGTTACCGACTCCGTTTGGGAGCCCGGGTACG
ATACCCCAGAGGTGTTGACAGAGAGCGTCGCGCGTGTTCTTTACCTCCTT
CCTATACGAGCCATCGCTGGTGAGTTCAAGGACTGCCAACAGGCATGCGT
TCCATGGACGGCGCAGGCATTC
back to top