mRNA_P-littoralis_Contig885.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig885.12.1
Unique NamemRNA_P-littoralis_Contig885.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig885.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig885contigP-littoralis_Contig885:79509..84726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2859
Hectar predicted targeting categoryother localisation
Exons4
Cds size1584
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig885.12.1prot_P-littoralis_Contig885.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig885 80236..83686 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791772.7331321-UTR-P-littoralis_Contig885:79508..796401680791772.7331321-UTR-P-littoralis_Contig885:79508..79640Pylaiella littoralis U1_48UTRP-littoralis_Contig885 79509..79640 +
1680791772.7505255-UTR-P-littoralis_Contig885:80132..802351680791772.7505255-UTR-P-littoralis_Contig885:80132..80235Pylaiella littoralis U1_48UTRP-littoralis_Contig885 80133..80235 +
1680791772.7989-UTR-P-littoralis_Contig885:83686..847261680791772.7989-UTR-P-littoralis_Contig885:83686..84726Pylaiella littoralis U1_48UTRP-littoralis_Contig885 83687..84726 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791772.7652605-CDS-P-littoralis_Contig885:80235..803751680791772.7652605-CDS-P-littoralis_Contig885:80235..80375Pylaiella littoralis U1_48CDSP-littoralis_Contig885 80236..80375 +
1680791772.7757206-CDS-P-littoralis_Contig885:81688..818581680791772.7757206-CDS-P-littoralis_Contig885:81688..81858Pylaiella littoralis U1_48CDSP-littoralis_Contig885 81689..81858 +
1680791772.7896438-CDS-P-littoralis_Contig885:82412..836861680791772.7896438-CDS-P-littoralis_Contig885:82412..83686Pylaiella littoralis U1_48CDSP-littoralis_Contig885 82413..83686 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig885.12.1

>prot_P-littoralis_Contig885.12.1 ID=prot_P-littoralis_Contig885.12.1|Name=mRNA_P-littoralis_Contig885.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=528bp
MVLRNFFAKWWDSNKAVRKMTPQQRECCADSWEFVTMGNPLDVPPSCLKG
ASCPTKGVPEKGREDLHEIDLKNRLCNIIVTAVISLLLCKMLVALSRIVK
RAASALWTKVVNLWRSGVRAVKLGWRHIFILWQSGVCAVKLGWRQVVILW
QSGVRAVKLGWRQVVVLWQSSVRAVKLGWRQVVILWQSGVGALRLGWRQV
VILLRADVRGARQVVILLRADVRAVKLGARQVVVRWQSGARTLALGARAG
ALTTWSAVTGAWLIGVSAVITFVRTGASFTSSAFKTVWLMAAGTAERLAS
TGASAVWSVLTAVWMTDVPRVKFVAWTFAKICAGSAMLCLHFPGGESTSL
DWFTFALGVFGTSIAFLILGDLDECLGIPTFLRFLAANCVGAAVATYVTK
TSGFNWNDSDTRVLGFGGAALWMVGVHNLNLSLALSEAVVEPFCRLAVAV
AAAITTAAAAAVHCGYHPLGQAALDLEALKLGILMYASVSTWPLLVWFVK
KCLLLIVGQFNNVPMRVRRVGRVWRVR*
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mRNA from alignment at P-littoralis_Contig885:79509..84726+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig885.12.1 ID=mRNA_P-littoralis_Contig885.12.1|Name=mRNA_P-littoralis_Contig885.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5218bp|location=Sequence derived from alignment at P-littoralis_Contig885:79509..84726+ (Pylaiella littoralis U1_48)
AGGCGAGAGCCAGGCGAAGGAGAGCCGGACTGGCTCCCGCTGCTGTTGGT
TACCCGGTTCTACTGCACCGCCCATCTTCGCTCGCACTGGTGGAACTGGT
CCATCCAGTCCACCAGGCCGGGCCAAGCGTCGGTGAGTGAAAGAGGGCAG
GCTGATACCTCTGTACGTACGCATGGATCTGATTTCATCAACCAACCGCA
TCTCCGTAATCAACGAGAGTACCACCTGGTACTGCTGCATGTTCCAGTCT
AGAACAAAGGGGGTAAGATCGGGGTGGACACACACAAACAATTCCAGCTG
CTCGCATGCGAGCCCAATTTGGTGCCCTCTCGTCGGCCGCCCTCGGCCCT
CCACCATTTACAAGCTTGTTGCCGGAAGTACAGGCTGCATAATCGTTGGG
CCTTCCGTTGGTGATCTCATTTTGTATTCGTATTTTACCAACGGGTGCAT
TAGATCTTCGCCCCTTGCACGCCACAGACCACTCTGCCTAGAGATACTCA
CGCATGCCATTGCGCTACTGTTGCGTTGCCGCTGCTGCTCCTGCCGCATA
AGTGTTGTAACTCCGCGTCGTTTGCGAATGTCCCTCTCGCAAATGCTTGC
TCTCGTGCGTGCCTCATTGCTCAGGGGTCGAGGAGCAACTTGGTAGACTG
CCATCACATCGTATCATTCCAGTACGAAACACACGGACGGCCTGGCCTAC
CCAGTACCCCGAAAATTGTGGTGAACGATGGTGCTGCGCAACTTCTTCGC
CAAATGGTGGGACTCTAATAAGGCTGTCCGCAAAATGACTCCTCAGCAAC
GCGAATGCTGTGCGGACAGCTGGGAATTCGTGACGATGGGCAACCCTCTC
GATGTTCCTCCCAGCTGGTGAGCTGTTGCAACACATGCAGGTTATGTTGC
TGTATGAAACCAAAGTGCAAGTTTTTAGTATCGCAGCAGTTCAGCACTAT
GGCTGTAGTGTATATACTACACGTCACATCCATACAGGATACGTTTAAAG
TAAAAACATTGATTCCCCCCCCCACGTTTGACGTTGCAACGACTACAGTA
GTTTCAACACAAGCGCAACGAGTCCTACAGAGGAAGACTATTTCTTCAGT
AAAGCAATAAAATACCGGGTAGCTTGCCTTTGACAGTTTTCCTGTCGAGG
GCTAATGTCAGCGGCCGAGCAAAAAACGAAATCGGGCACTTTTTGGTCGG
AGCAGAAAAATGAAAGAGGCGTGTTTTCGTATTATCGAACCTTCTGAGGA
GGCGTGTTTTCGTTTTCTACCCCGAGGCAATGACTAATGTGCCTTGGACC
TTTTTCGCATTTGCGAAAACGGAGAATCACATTGATATAGAAGGCTTTTT
GGCAGGAACGCTTCAATTCTGCGAAGCATCTCCGGTTGTAAAGCAGACAC
GCTAACATGTTGGCTAATTTCTGGCCACAGAAGGGACGACATTCCCTGCT
GACTGCATGTCCAGAGAGATGGTCTAAGCGTCAACCAGTGATGCCTAAGG
CTTGGGGCGAGAGGAGTATCGAGCGAGACGGGAATTGTTTTAAAGCTACC
CACAGCGACACACTCGTGCTCTGAGCCGCTTTTGGGGTGGCTTTTACAAG
TGAACGTTGCTGCTGCTCAAAAAGTCAACGCAAAAGGCGTTACTCTCCCT
CATTCCCTCTTCTCCCTCACCCTAGTACCATGTCCGTTGTGACAGCCCCC
CCCAAAAAATAGCCTTGTTCGTTGATGCAAAACAGTTTGTGTTCCTTCGA
AAACGAAGTTGCTTCCGTTGTGCGGACCTAATTACGAGTTCTGGTCAATC
TTTCATACGGGCCCTAACCTCCTTTGTGGCTCAAAGGTTTTTCGGAGGGT
GTTTTCACTTTCTTATACCCTACTGTACGGTATTTTTTTGTAATTCTGGT
GCACGTGAAAGATCACTGTAAGGACTGAAGAATGCATCCCCCCGAGATTT
TTTTACGATGTATTTTGTTTTGAAGGTTTTCCGTTCTCTCCCGCAGCAAC
GCTTCACGTTTCGAATTCCGACGGGGTTCCCTCCAAGAGTAACGCTTCAC
GTATCGAATTCCGGCGGCAGCGTCTTCGAGACGCTTTCAGACGCTACGCT
TAGGCAACATGTTGTGTCAATTTATAAAATCGAAAGTAACCTGACGGCAC
CTCTACACCCCCGCACCCACGCGTCCCAAGCTTGAAAGGAGCTTCTTGCC
CTACCAAAGGCGTACCCGAGAAAGGGCGAGAGGATCTCCATGAAATCGAT
CTGAAAAATAGGTTGTGCAACATCATCGTGACCGCAGTGATATCACTTCT
CCTGTGCAAGATGTTGGTTGCCTTATCCAGGATCGTGAAGCGAGCCGCAA
GTGAGTCACTCCCCTGCGTTACTGCAACAAGTTTATGTCATTGCGAGATT
GCGTGATCACCCCTGGACCAGGGCAACTTCGACACCCTTCGCAGAACGAG
TTATTGGTGCTCCGGCAACAAAGTGCGCGCGCTAGAGTTCGTTGCCGAGC
CGTACTGAAAATAGGGCATCAATGACGACATCGCCGCGAACAGAACGAAC
GTGCAACCGATTGTACGATCTCCGGCATGCAAAGCAGTGTAGAGCATATT
CCCACTTAGCCAAGCGAAATTGGTTTGATGAACGGCGAGGACCGTTGGAA
ATCAATAGAGGCAAGCGTTCTCGAGTTGGGCTGCACGGTACACATTATAT
CTCTTGAATATATCGCAGCCTGTGCAGCAGGTGGTATGAGTTATCGTCGT
GCTGCATGCGCGTCTAACGTATCGCCTCCGAACGACCTGCATTTGGGATG
GCGATGCCCAGCAAAAACGTCTAACACGACCAGCAAGTTTTCTTTTTAAT
GCACCCTTTGTCATCTTGATCCATTGTTTTGTTTGGCCGTCATGGTGTGA
TCAGGTGCTCTTTGGACAAAGGTCGTCAACCTGTGGCGATCGGGCGTGCG
CGCAGTGAAGCTCGGCTGGAGGCATATTTTCATCCTGTGGCAATCGGGCG
TGTGCGCAGTGAAGCTCGGCTGGAGGCAGGTCGTCATCCTGTGGCAATCG
GGTGTGCGCGCAGTGAAGCTCGGCTGGAGGCAGGTCGTCGTCCTGTGGCA
ATCGAGCGTGCGCGCGGTGAAGCTCGGCTGGAGGCAGGTCGTCATCCTGT
GGCAATCGGGCGTGGGCGCATTGCGGCTCGGCTGGAGGCAGGTCGTCATC
CTGTTGCGAGCGGACGTGCGCGGCGCGAGGCAGGTCGTCATCCTGTTGCG
AGCGGACGTGCGCGCAGTGAAGCTCGGTGCGAGGCAGGTCGTCGTCCGGT
GGCAATCGGGTGCGCGCACATTGGCGTTAGGCGCAAGGGCCGGCGCGTTG
ACCACCTGGTCGGCAGTCACGGGTGCGTGGCTGATAGGCGTGAGCGCAGT
GATAACCTTCGTGAGGACCGGTGCGTCGTTCACCTCGTCGGCGTTCAAGA
CCGTTTGGCTGATGGCCGCCGGCACAGCAGAGCGCTTGGCTAGTACCGGT
GCATCGGCCGTCTGGTCGGTGCTCACGGCGGTGTGGATGACGGACGTGCC
CAGAGTGAAGTTCGTCGCATGGACCTTCGCCAAGATATGCGCAGGGTCGG
CCATGCTTTGCCTGCACTTTCCTGGAGGCGAGTCGACATCCTTGGACTGG
TTCACGTTTGCCCTCGGGGTGTTTGGGACGTCCATCGCCTTCCTCATTCT
TGGAGACCTCGACGAGTGCCTGGGTATCCCGACGTTTCTCCGCTTCCTCG
CCGCCAACTGCGTTGGGGCAGCGGTGGCGACGTACGTGACGAAAACGTCC
GGCTTCAACTGGAACGACTCCGACACGCGGGTGCTCGGTTTCGGCGGGGC
CGCACTTTGGATGGTCGGCGTCCACAACCTGAACCTCTCCCTTGCACTGT
CCGAAGCCGTCGTTGAACCTTTCTGCCGACTGGCGGTGGCTGTAGCCGCG
GCAATCACGACTGCGGCTGCGGCGGCCGTGCACTGCGGCTACCATCCGCT
GGGACAGGCCGCTCTAGACCTGGAGGCGTTGAAGTTGGGAATTTTGATGT
ATGCCTCGGTATCGACCTGGCCGCTCCTGGTTTGGTTCGTGAAAAAATGC
CTGCTCCTCATCGTGGGACAATTCAACAATGTCCCCATGCGAGTCCGCCG
GGTGGGGAGGGTGTGGAGGGTGCGCTAGGCGGCTGGCTCTCCGTGAGTTG
AGTGGGCCAAACGCTGAAGCCATCAACAACGGACGCAGCAGCACTTAATC
TAGGGAGTTTGTCCAAACATATAGCGAGTGTGTGTGTGGCGTGTCATCAG
TATTATGTGGGTGTAGTCATTGCTGAGACTTTCTGCGTCACCTCACGCCA
GTGGGTTATTTTTTGCGCAACGAAGCAGGCCACTCGTAGGCCAAGAGGCT
TCACTCGACTCGATGTCGTGAGATAGTCAATGTGCGTACGAGTAGCAACG
ACGACAGCAACAACATCGACATCGTGGTCTGACCGATCCAGGGTTGGTTA
TCGTTGAGGTCTGTAAGCTGCTTGGCGTTTGCGATGTTTGCGGCATCCCT
CCCAGCCCTCCCAGCAGATCTCAACTGCTGGTGTACGACGGGGTTCGGTA
AAAACATTTGGAGAATACAACACTGGTACGTTGCTGTATCAGTGTGGAAT
AGTCGATTGTGTGTTCAGGGAAAACGGGGGGGTAACTCTGCATTGAACAT
TATAGGGGCTGGGCGGGAAAGTGCATGGTAGACACGAGTGAAACTGGAAA
AGGCGAGAGCGTGCGCGAGGTTTGTGGGCAAACGGCGATGGTGGACTTGC
CATGTTTCGGGCCTTTGGCAATTTGTTAGGTTGTTGCCAGGTGAGGATAG
AGCTCTAGAACAGCTTACTTGGTCACGCGTTCAAATTGACGTGCGAACAC
CTCTGGTCCAAGCCGAACAAAACTACGTGGGAGTTCTTGCAGAATTATAC
ACAAAGAGTTTTTTAGCATTTTCGCACATTCAGGAGCATGTGTCCCACGA
TTCACTGCTATTACAGAAATAGAGGCTATAATTCGTACATGCATGTACAA
AGTATGATGTTTCACGGGTAAAGGGGACGGTGATGAGGGGATATCCCCAA
CAGCAATATCCTCGACAAACTTCGTGCTAATTTGTGGTACGTCTCAGTTG
TGTGCGGGCGTGCGGGCGTGCAGGCGCGCAGGCGTGCGGTGGAACTAATT
TTCATTATTTTTCGTTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig885:79509..84726+

>mRNA_P-littoralis_Contig885.12.1 ID=mRNA_P-littoralis_Contig885.12.1|Name=mRNA_P-littoralis_Contig885.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1584bp|location=Sequence derived from alignment at P-littoralis_Contig885:79509..84726+ (Pylaiella littoralis U1_48)
ATGGTGCTGCGCAACTTCTTCGCCAAATGGTGGGACTCTAATAAGGCTGT
CCGCAAAATGACTCCTCAGCAACGCGAATGCTGTGCGGACAGCTGGGAAT
TCGTGACGATGGGCAACCCTCTCGATGTTCCTCCCAGCTGCTTGAAAGGA
GCTTCTTGCCCTACCAAAGGCGTACCCGAGAAAGGGCGAGAGGATCTCCA
TGAAATCGATCTGAAAAATAGGTTGTGCAACATCATCGTGACCGCAGTGA
TATCACTTCTCCTGTGCAAGATGTTGGTTGCCTTATCCAGGATCGTGAAG
CGAGCCGCAAGTGCTCTTTGGACAAAGGTCGTCAACCTGTGGCGATCGGG
CGTGCGCGCAGTGAAGCTCGGCTGGAGGCATATTTTCATCCTGTGGCAAT
CGGGCGTGTGCGCAGTGAAGCTCGGCTGGAGGCAGGTCGTCATCCTGTGG
CAATCGGGTGTGCGCGCAGTGAAGCTCGGCTGGAGGCAGGTCGTCGTCCT
GTGGCAATCGAGCGTGCGCGCGGTGAAGCTCGGCTGGAGGCAGGTCGTCA
TCCTGTGGCAATCGGGCGTGGGCGCATTGCGGCTCGGCTGGAGGCAGGTC
GTCATCCTGTTGCGAGCGGACGTGCGCGGCGCGAGGCAGGTCGTCATCCT
GTTGCGAGCGGACGTGCGCGCAGTGAAGCTCGGTGCGAGGCAGGTCGTCG
TCCGGTGGCAATCGGGTGCGCGCACATTGGCGTTAGGCGCAAGGGCCGGC
GCGTTGACCACCTGGTCGGCAGTCACGGGTGCGTGGCTGATAGGCGTGAG
CGCAGTGATAACCTTCGTGAGGACCGGTGCGTCGTTCACCTCGTCGGCGT
TCAAGACCGTTTGGCTGATGGCCGCCGGCACAGCAGAGCGCTTGGCTAGT
ACCGGTGCATCGGCCGTCTGGTCGGTGCTCACGGCGGTGTGGATGACGGA
CGTGCCCAGAGTGAAGTTCGTCGCATGGACCTTCGCCAAGATATGCGCAG
GGTCGGCCATGCTTTGCCTGCACTTTCCTGGAGGCGAGTCGACATCCTTG
GACTGGTTCACGTTTGCCCTCGGGGTGTTTGGGACGTCCATCGCCTTCCT
CATTCTTGGAGACCTCGACGAGTGCCTGGGTATCCCGACGTTTCTCCGCT
TCCTCGCCGCCAACTGCGTTGGGGCAGCGGTGGCGACGTACGTGACGAAA
ACGTCCGGCTTCAACTGGAACGACTCCGACACGCGGGTGCTCGGTTTCGG
CGGGGCCGCACTTTGGATGGTCGGCGTCCACAACCTGAACCTCTCCCTTG
CACTGTCCGAAGCCGTCGTTGAACCTTTCTGCCGACTGGCGGTGGCTGTA
GCCGCGGCAATCACGACTGCGGCTGCGGCGGCCGTGCACTGCGGCTACCA
TCCGCTGGGACAGGCCGCTCTAGACCTGGAGGCGTTGAAGTTGGGAATTT
TGATGTATGCCTCGGTATCGACCTGGCCGCTCCTGGTTTGGTTCGTGAAA
AAATGCCTGCTCCTCATCGTGGGACAATTCAACAATGTCCCCATGCGAGT
CCGCCGGGTGGGGAGGGTGTGGAGGGTGCGCTAG
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