mRNA_P-littoralis_Contig884.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig884.31.1
Unique NamemRNA_P-littoralis_Contig884.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig884.31.1 vs. uniprot
Match: F6MHT6_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=F6MHT6_SACJA)

HSP 1 Score: 190 bits (483), Expect = 3.650e-57
Identity = 95/185 (51.35%), Postives = 126/185 (68.11%), Query Frame = 1
Query:    1 QVGFEGCTTQPSLTYEGQVYNLLQFHIHSPSEYEIAGAEYSAGFHFVHVKAGTTSDLLVVGVAFDITTHSTNPELQKYWDVLETGASNTTDTFTASPYDLLSLNPGFTHFMGSLTTPPCTEVRAVHPAKSSRVEWIFMNNPSYMSETQLNLYRTSVATFPGSKVSELGNTNRPVQPVNDRAVTYV 555
            ++ F GC+  P + ++G+ YNLLQ HIHSPSE+ I G+E+SA  H+VHVK GT   LLVVGV FD T + +N E++  WDVL+ G + T + FT   YD++  NP F+H+MGSLTTPPCTE           V+WI M++P  MS+ QL+ +RTSVA F  SKV E GNTNRP Q +NDR + +V
Sbjct:  114 EILFGGCSDVPHVEFKGERYNLLQIHIHSPSEHMIGGSEHSAEIHWVHVKEGTEDQLLVVGVLFDTTDYGSNVEIEHLWDVLDIGETTTKEVFTTRIYDIMPSNPVFSHYMGSLTTPPCTE----------GVKWIVMSDPVTMSKMQLDEFRTSVALFDDSKVDEHGNTNRPGQSLNDRKIFFV 288          
BLAST of mRNA_P-littoralis_Contig884.31.1 vs. uniprot
Match: D8LB10_ECTSI (Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB10_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 2.710e-55
Identity = 93/185 (50.27%), Postives = 119/185 (64.32%), Query Frame = 1
Query:    1 QVGFEGCTTQPSLTYEGQVYNLLQFHIHSPSEYEIAGAEYSAGFHFVHVKAGTTSDLLVVGVAFDITTHSTNPELQKYWDVLETGASNTTDTFTASPYDLLSLNPGFTHFMGSLTTPPCTEVRAVHPAKSSRVEWIFMNNPSYMSETQLNLYRTSVATFPGSKVSELGNTNRPVQPVNDRAVTYV 555
            QV F GCT  P L Y+G+ YNLLQFHIHSPSE+ + GAE++A  H VH+K  TT  LLVVG+ F+++ +  N EL+  W+V++       + F A+ Y LL   P FT + GSLTTPPCTE           V WI M+ P+YMS  QL+ YR +VA   GSKVSE+G TNRP+Q +N R V YV
Sbjct:  119 QVDFSGCTDAPYLQYQGETYNLLQFHIHSPSEHVLGGAEHAAEIHLVHLKQNTTDGLLVVGIMFEVSDYGQNVELEPMWNVMDLNQDIAEEQFMAAAYSLLPATPSFTTYSGSLTTPPCTE----------GVRWILMSEPNYMSTWQLDNYRRAVALHEGSKVSEVGATNRPIQELNGRDVLYV 293          
BLAST of mRNA_P-littoralis_Contig884.31.1 vs. uniprot
Match: Q9SMD6_9PHAE (Carbonic anhydrase alpha type (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q9SMD6_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 6.930e-43
Identity = 74/151 (49.01%), Postives = 99/151 (65.56%), Query Frame = 1
Query:  103 IAGAEYSAGFHFVHVKAGTTSDLLVVGVAFDITTHSTNPELQKYWDVLETGASNTTDTFTASPYDLLSLNPGFTHFMGSLTTPPCTEVRAVHPAKSSRVEWIFMNNPSYMSETQLNLYRTSVATFPGSKVSELGNTNRPVQPVNDRAVTYV 555
            I G+E+ A  H+VHVKAGT   LLV+GV FD T + +N E++  WDVL+ G   T + F    YD++  NP F+H+MGSLTTPPCTE           V+WI M++P  M + QL+ +RTSVA F  SKV E+GNTNRP Q +N+R + +V
Sbjct:    2 IGGSEHEAEIHWVHVKAGTDDQLLVIGVLFDTTQYGSNVEIEHLWDVLDIGKPTTDEVFVTRVYDIMPSNPVFSHYMGSLTTPPCTE----------GVKWIVMSDPVTMGKMQLDEFRTSVALFDNSKVDEMGNTNRPRQSLNNRDIFFV 142          
BLAST of mRNA_P-littoralis_Contig884.31.1 vs. uniprot
Match: A0A872YNN4_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A872YNN4_SACJA)

HSP 1 Score: 151 bits (381), Expect = 8.820e-42
Identity = 80/189 (42.33%), Postives = 117/189 (61.90%), Query Frame = 1
Query:    1 QVGFEGCTTQPSLTYEGQVYNLLQFHIHSPSEYEIAGAEYSAGFHFVHVKA---GTTSDLLVVGVAFDITTHSTNPELQKYWDVLETGASNTTDTFTASPYDLLSLNPGFTHFMGSLTTPPCTEVRAVHPAKSSRVEWIFMNNPSYMSETQLNLYRTSVATFPGSKVSELGNTNRPVQPVNDRAVTYVV 558
            ++ F  CT+  +L+++G  Y+LLQ HIHSPSE+ +AG+ + A  H VH +    GT S+LLV+GV  D   H  N  L+  WDVL +GA         +PY+L+  +  ++H+MGSLTTPPC+E+          V W+ M+ P+ + + QL+++R SVAT   S+V E  NTNRP Q +N RAV Y+V
Sbjct:  121 EIDFSECTSTSNLSFDGGKYSLLQMHIHSPSEHMVAGSLHDAEIHLVHSRDDSDGTESELLVIGVFLDAKEHGWNVALEPLWDVLGSGAK---PRGVINPYELIPSDMAYSHYMGSLTTPPCSEI----------VRWVVMSTPTVIGDLQLDIFRDSVATATNSQVDERSNTNRPGQAINGRAV-YIV 295          
BLAST of mRNA_P-littoralis_Contig884.31.1 vs. uniprot
Match: H6WB77_VAULI (Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB77_VAULI)

HSP 1 Score: 109 bits (272), Expect = 6.430e-26
Identity = 73/211 (34.60%), Postives = 98/211 (46.45%), Query Frame = 1
Query:    4 VGFEG-CTTQPSLTYEGQVYNLLQFHIHSPSEYEIAGAEYSAGFHFVHVKAGTTSDLLVVGVAFDITTHST-NPELQKYWD-----------------------VLETGASNTTDTFTASPYDLLSLNPGFTHFMGSLTTPPCTEVRAVHPAKSSRVEWIFMNNPSYMSETQLNLYRTSVATFPGSKVSELGNTNRPVQPVNDRAVTYVVL 561
            V F+G C T P++T  G V+NLLQFH+HS SE+ I G  Y A  HFVH  A   + L VVGV    T+ +  N E  KYW+                       V  T +S+ +     +PY +L  +  + +++GSLTTPPC+E           V WI M     +S  QL  +R  +       V   GN  RP QP N R V   V+
Sbjct:   60 VTFDGYCQTTPTITINGAVFNLLQFHLHSVSEHVIGGGYYDAEIHFVHYSALDPTSLAVVGVMISSTSDNVGNLEFAKYWEHMAYVSGKQQYASEIVEKSTATMVSATASSSMSAMEQVNPYSMLPADGTYYNYLGSLTTPPCSET----------VTWIVMKEGITVSPDQLEAFRAGLMDPEFPLVDNYGNNARPPQPTNGRMVYQCVM 260          
BLAST of mRNA_P-littoralis_Contig884.31.1 vs. uniprot
Match: H6WB76_VAULI (Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB76_VAULI)

HSP 1 Score: 101 bits (251), Expect = 3.070e-22
Identity = 74/216 (34.26%), Postives = 100/216 (46.30%), Query Frame = 1
Query:    4 VGFEG-CTTQPSLTYEGQVYNLLQFHIHSPSEYEIAGAEYSAGFHFVHVKAGTTSDLLVVGVAFDITTHST-NPELQKYWD--------------VLETGASN----TTDTFTAS----------PYDLLSLNPGFTHFMGSLTTPPCTEVRAVHPAKSSRVEWIFMNNPSYMSETQLNLYRTSVATFPGSKVSELGNTNRPVQPVNDRAVTYVVL 561
            V F+G C T P++T  G V+NLLQFH+HS SE+ I G  Y A  HFVH  A   + L VVGV    T+ +  N E  KY +              ++ET A+     T  +  +S          PY +L  +  + +++GSLTTPPC+E           V WI M     +S  QL  +R  +       V   GN  RP QP N R V   V+
Sbjct:  136 VTFDGYCQTTPTITINGAVFNLLQFHLHSVSEHVIGGGYYDAEIHFVHYSALDPTSLAVVGVMISSTSDNIGNLEFTKYAEHMAYVSGKQKYASEIMETDATMAPAATPSSMASSTSMSAMEQVNPYSMLPADGTYYNYLGSLTTPPCSET----------VTWIVMKEGITVSPDQLEAFRAGLMDPEFPLVDNYGNNARPPQPTNGRMVYQCVM 341          
BLAST of mRNA_P-littoralis_Contig884.31.1 vs. uniprot
Match: A0A835YV18_9STRA (Alpha carbonic anhydrase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV18_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.640e-21
Identity = 59/194 (30.41%), Postives = 98/194 (50.52%), Query Frame = 1
Query:    1 QVGFEGC--TTQPSLTYEGQV----YNLLQFHIHSPSEYEIAGAEYSAGFHFVHVKAGTTSDLLVVGVAFDITTHSTNPELQKYWDVLETGASNTTDTFT------ASPYDLLSLNPGFTHFMGSLTTPPCTEVRAVHPAKSSRVEWIFMNNPSYMSETQLNLYRTSVATFPGSKVSELGNTNRPVQPVNDRAV 546
            ++ +EGC  +T+P L Y G +    Y L Q H+H+ SE+ + G   +A  H VH+    ++D+LV+ V  D+   S  PE+ KYW ++    +N            + PY LL  +  +  + GSLT PPCTE           V ++ +   + +++ QL  +R S     G  + + G+  RP+QP+N R+V
Sbjct:  469 ELSYEGCDDSTRPGLQYSGALGHSSYKLKQVHLHAGSEHSVDGEFGAAELHLVHINEADSTDILVLAVLLDVAETSEEPEVYKYWTLMNEAVANYQGESAIDMNAISDPYALLPESKQYYTYQGSLTIPPCTET----------VTFVILAERTQVADAQLQAFRQSQTIAFGPTLDQSGSNARPLQPLNGRSV 652          
BLAST of mRNA_P-littoralis_Contig884.31.1 vs. uniprot
Match: A0A836C9F5_9STRA (Alpha carbonic anhydrase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9F5_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 5.060e-21
Identity = 58/194 (29.90%), Postives = 97/194 (50.00%), Query Frame = 1
Query:    1 QVGFEGC--TTQPSLTYEGQV----YNLLQFHIHSPSEYEIAGAEYSAGFHFVHVKAGTTSDLLVVGVAFDITTHSTNPELQKYWDVLETGASNTTDTFT------ASPYDLLSLNPGFTHFMGSLTTPPCTEVRAVHPAKSSRVEWIFMNNPSYMSETQLNLYRTSVATFPGSKVSELGNTNRPVQPVNDRAV 546
            ++ +E C  +T+P L Y G +    Y L Q H+H+ SE+ + G   +A  H VH+    ++D+LV+ V  D+   S  PE+ KYW ++    +N            + PY LL  +  +  + GSLT PPCTE           V ++ +   + +++ QL  +R S     G  + + G+  RP+QP+N R+V
Sbjct:  166 ELSYEECDDSTRPGLQYSGALGHSSYKLKQVHLHAGSEHSVDGQFGAAELHLVHINEADSTDILVLAVLLDVAETSEEPEVYKYWTLMNEAVANYQGESAIDMNAISDPYALLPESKQYYTYQGSLTIPPCTET----------VTFVILAERTQVADAQLQAFRQSQTIAFGPTLDQSGSNARPLQPLNGRSV 349          
BLAST of mRNA_P-littoralis_Contig884.31.1 vs. uniprot
Match: D5V5J1_ARCNC (Carbonic anhydrase n=2 Tax=Arcobacteraceae TaxID=2808963 RepID=D5V5J1_ARCNC)

HSP 1 Score: 94.0 bits (232), Expect = 4.840e-20
Identity = 63/176 (35.80%), Postives = 87/176 (49.43%), Query Frame = 1
Query:   28 QPSLTYEGQVYNLLQFHIHSPSEYEIAGAEYSAGFHFVHVKAGTTSDLLVVGVAFDITTHSTNPELQKYWDVL--ETGASNTTDTFTASPYDLLSLNPGFTHFMGSLTTPPCTEVRAVHPAKSSRVEWIFMNNPSYMSETQLNLYRTSVATFPGSKVSELGNTN-RPVQPVNDRAV 546
            Q S  ++G+ + LLQFH HS SE+ + G  Y    H VH       +L VVGV F +  +  N  LQK    +  + G  N  D F+ +P D L  + G+ H++GSLTTPPCT++          VEW  M NP  +S+ QL  ++             L N N RP  P+N R V
Sbjct:  110 QSSALFQGKKFKLLQFHFHSKSEHTVNGEYYPLELHLVH--QAEDGELGVVGVFFKLGDY--NSSLQKVLKFMPKDAGGKNEIDKFSINPNDFLPKDRGYYHYLGSLTTPPCTQI----------VEWYVMKNPITLSQKQLEQFQN------------LYNGNFRPTYPLNKRIV 259          
BLAST of mRNA_P-littoralis_Contig884.31.1 vs. uniprot
Match: E8MAY9_PHOS4 (Carbonic anhydrase n=1 Tax=Vibrio sinaloensis DSM 21326 TaxID=945550 RepID=E8MAY9_PHOS4)

HSP 1 Score: 90.5 bits (223), Expect = 6.380e-19
Identity = 68/187 (36.36%), Postives = 93/187 (49.73%), Query Frame = 1
Query:    1 QVGFEGCTTQPSLTYEGQVYNLLQFHIHSPSEYEIAGAEYSAGFHFVHV-KAGTTSDLLVVGVAFDITTHSTNPELQKYWDVLETGASNTTDTFTASPYD---LLSLNPGFTHFMGSLTTPPCTEVRAVHPAKSSRVEWIFMNNPSYMSETQLNLYRTSVATFPGSKVSELGNTNRPVQPVNDRAVT 549
            Q   EG  T   LT +G+V++L QFH H+PSE  + G EY    HFVH  KAG    L VV V F++     NP+L +   +L T  S  +D     P+D   LL+    +  F GSLTTPPC+E           V W+ +  P  +S  Q+ L+  +           +GN NRP+Q +N R VT
Sbjct:   82 QTSLEGNNT---LTVDGKVFSLKQFHFHTPSENHVDGKEYPLEAHFVHADKAG---HLAVVAVFFEL--GKANPDLAQ---LLATVPSANSDVAIKIPFDADALLTNTNDYYRFNGSLTTPPCSE----------GVRWLVLKAPQTVSAEQVKLFNQA-----------MGNNNRPLQSLNARIVT 236          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig884.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F6MHT6_SACJA3.650e-5751.35Carbonic anhydrase n=1 Tax=Saccharina japonica Tax... [more]
D8LB10_ECTSI2.710e-5550.27Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
Q9SMD6_9PHAE6.930e-4349.01Carbonic anhydrase alpha type (Fragment) n=1 Tax=L... [more]
A0A872YNN4_SACJA8.820e-4242.33Carbonic anhydrase n=1 Tax=Saccharina japonica Tax... [more]
H6WB77_VAULI6.430e-2634.60Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID... [more]
H6WB76_VAULI3.070e-2234.26Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID... [more]
A0A835YV18_9STRA1.640e-2130.41Alpha carbonic anhydrase n=1 Tax=Tribonema minus T... [more]
A0A836C9F5_9STRA5.060e-2129.90Alpha carbonic anhydrase n=1 Tax=Tribonema minus T... [more]
D5V5J1_ARCNC4.840e-2035.80Carbonic anhydrase n=2 Tax=Arcobacteraceae TaxID=2... [more]
E8MAY9_PHOS46.380e-1936.36Carbonic anhydrase n=1 Tax=Vibrio sinaloensis DSM ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig884contigP-littoralis_Contig884:101433..103245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LB10
PFAMsCarb_anhydrase
Model size564
Max annot lvl2759|Eukaryota
KEGG rclassRC02807
KEGG koko:K01672,ko:K01674,ko:K04413
KEGG ReactionR00132,R10092
KEGG Pathwayko00910,map00910
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0042597,GO:0044464
Exons5
Evalue4.45e-56
EggNOG OGsCOG3338@1|root,KOG0382@2759|Eukaryota
EC2.7.11.1,4.2.1.1
Descriptioncarbonate dehydratase activity
Cds size564
COG categoryP
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791772.6424246-CDS-P-littoralis_Contig884:101432..1015341680791772.6424246-CDS-P-littoralis_Contig884:101432..101534Pylaiella littoralis U1_48CDSP-littoralis_Contig884 101433..101534 +
1680791772.6537793-CDS-P-littoralis_Contig884:101719..1018391680791772.6537793-CDS-P-littoralis_Contig884:101719..101839Pylaiella littoralis U1_48CDSP-littoralis_Contig884 101720..101839 +
1680791772.6719136-CDS-P-littoralis_Contig884:102311..1024831680791772.6719136-CDS-P-littoralis_Contig884:102311..102483Pylaiella littoralis U1_48CDSP-littoralis_Contig884 102312..102483 +
1680791772.6819773-CDS-P-littoralis_Contig884:102816..1029111680791772.6819773-CDS-P-littoralis_Contig884:102816..102911Pylaiella littoralis U1_48CDSP-littoralis_Contig884 102817..102911 +
1680791772.691836-CDS-P-littoralis_Contig884:103170..1032451680791772.691836-CDS-P-littoralis_Contig884:103170..103245Pylaiella littoralis U1_48CDSP-littoralis_Contig884 103171..103245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig884.31.1prot_P-littoralis_Contig884.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig884 101433..103245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig884.31.1

>prot_P-littoralis_Contig884.31.1 ID=prot_P-littoralis_Contig884.31.1|Name=mRNA_P-littoralis_Contig884.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=188bp
QVGFEGCTTQPSLTYEGQVYNLLQFHIHSPSEYEIAGAEYSAGFHFVHVK
AGTTSDLLVVGVAFDITTHSTNPELQKYWDVLETGASNTTDTFTASPYDL
LSLNPGFTHFMGSLTTPPCTEVRAVHPAKSSRVEWIFMNNPSYMSETQLN
LYRTSVATFPGSKVSELGNTNRPVQPVNDRAVTYVVL*
back to top

mRNA from alignment at P-littoralis_Contig884:101433..103245+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig884.31.1 ID=mRNA_P-littoralis_Contig884.31.1|Name=mRNA_P-littoralis_Contig884.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1813bp|location=Sequence derived from alignment at P-littoralis_Contig884:101433..103245+ (Pylaiella littoralis U1_48)
CAGGTTGGTTTCGAGGGTTGCACGACCCAACCTTCCCTGACCTACGAAGG CCAGGTCTACAACCTCCTCCAGTTCCATATCCACTCGCCTTCTGAGTACG AGGTGAGCGGAGATGGACATGTGCGTACCACGACTTTGTTGGCGGCCGCG GGTAGATCCTGAATTGATATCTCGATAATAAAACCAAGTGACCGCAGCGC AACCGAGAACACATTTTGTCTGTGTGTCGTTGTTGAGGCAACTTCGGTGT TTGACATCAACTCCGCGTGCTGTTTACTGGCGAACAGATCGCAGGTGCCG AGTACAGCGCGGGTTTCCACTTTGTCCACGTCAAGGCAGGCACCACTTCC GACTTGCTCGTGGTTGGCGTCGCGTTTGACATAACCACCCACAGCACCAA CCCCGAGGTGAGAAAAACGTTCACGAAAACCGTTGCCGTAGAGACAGGGC GCAGATTTCGGTTTCTCTCACCGATTTTTTGGCAAGCACTCCCCCCCTGC CCCTTACGCCTTTCAGAGGAGTTTGTCCCAAACGTCAGACGGCAAATATT TCGAACAACCAGTCATTCATTCGCTACGCGCGCTCTTGTTGTTAAACCTC TGTAGGTGAGCGAGAATGTGTTTCGTAGGCCGGGCTAGGTCATTTGGTTT GGTGATGGGTCATGCTCTGCGACGCCTGCAGCCGGGGTGCCCTTCAGTTG CCAAGCCGCTAGTAGGACCTTTTCAGGGCACTCCAACACGGTCGCCGCGC CCCGGTGCAAGGAATGCAATGAGCGCTGCATCACACCGTGTTGCGATATA TTACGCTGCTGGCAGTTGAAAGCCAGTGCGCACATCGAATAATTGTCATG GATGCCCCCTTGTGCTCTTGCTCCAACAGCTGCAGAAGTACTGGGACGTC CTTGAAACGGGTGCTTCCAACACGACCGATACTTTCACGGCATCTCCGTA CGACCTCCTCTCCCTCAACCCGGGCTTCACGCACTTCATGGGATCGCTCA CGACGCCCCCGTGCACCGAGGTAAGGGCTGTTCACCCGGCAAAAAGCTCA AGTGTCCGCCCGTGGAATCTAAAACACGCTTGTATCGCATTTTGCTAGGC GCAGAGAAAGGAAAGGTGGCAGAAGAAGGTGTAGAATCAAGGGCGCCCGC ATGCTCTCAAGTTGTGTCGCAAACTGTAATATTTCAAGCCGCACTATTCC CAAGTGTAGAAGACGCCTGTTGAACATCCCGACAGGGTTTGGAAATCGTG TTGCGCTAGTTTGTATTGTTGCTGCGAAAGAGGAGTTGTTCGTGTCAACT GCCGGCTTTCCTCAAGACACATTGTCGTACGTCAGTCATGTGATTTAAAA CCATATCCTACACCGCGCAATGTGTTACGCCCAGGAGTCGAATGGATATT CATGAACAACCCGAGCTACATGAGCGAGACGCAGCTCAACCTGTACCGCA CCTCCGTCGCCACCTTCCCCGGCTCTAAGGTGAAGAGGCGCGCTTGCTTG TTGCGAAGTCGCTGTCATGACCCGTCTCTACTCGCTGCTTTCGGCCTCAA GAGGGAGTGCCCAGAGCCGCCACGGTCTTGAGAAATGTGGCAGACCACCG TCCACCACCCTGTGTACCTAACGACCCGCTCACCCGCCGCTGCTCTTCTG TAGTATAAAGTCTTCCCTACCTTGTCCTCTAGAGTGAACCCGACCTTGGC CCACCCCCGCGCGTCCTTTGTTGTTTTTTTTCCCGCAGGTCAGCGAGCTG GGTAACACCAACCGCCCTGTCCAACCTGTCAACGACCGCGCCGTGACATA CGTCGTGCTCTAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig884:101433..103245+

>mRNA_P-littoralis_Contig884.31.1 ID=mRNA_P-littoralis_Contig884.31.1|Name=mRNA_P-littoralis_Contig884.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=564bp|location=Sequence derived from alignment at P-littoralis_Contig884:101433..103245+ (Pylaiella littoralis U1_48)
CAGGTTGGTTTCGAGGGTTGCACGACCCAACCTTCCCTGACCTACGAAGG
CCAGGTCTACAACCTCCTCCAGTTCCATATCCACTCGCCTTCTGAGTACG
AGATCGCAGGTGCCGAGTACAGCGCGGGTTTCCACTTTGTCCACGTCAAG
GCAGGCACCACTTCCGACTTGCTCGTGGTTGGCGTCGCGTTTGACATAAC
CACCCACAGCACCAACCCCGAGCTGCAGAAGTACTGGGACGTCCTTGAAA
CGGGTGCTTCCAACACGACCGATACTTTCACGGCATCTCCGTACGACCTC
CTCTCCCTCAACCCGGGCTTCACGCACTTCATGGGATCGCTCACGACGCC
CCCGTGCACCGAGGTAAGGGCTGTTCACCCGGCAAAAAGCTCAAGAGTCG
AATGGATATTCATGAACAACCCGAGCTACATGAGCGAGACGCAGCTCAAC
CTGTACCGCACCTCCGTCGCCACCTTCCCCGGCTCTAAGGTCAGCGAGCT
GGGTAACACCAACCGCCCTGTCCAACCTGTCAACGACCGCGCCGTGACAT
ACGTCGTGCTCTAA
back to top