mRNA_P-littoralis_Contig884.26.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig884.26.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 3.800e-16 Identity = 37/75 (49.33%), Postives = 53/75 (70.67%), Query Frame = 1
Query: 76 RGVDGV-DVAGNVVAPVRWPHLSLLARLYAGVDTTSCQAEGNFSALKQVLSDMRAGTLPRKIEQMLLLRLNRHLI 297
RG D V GNV +P P+L+ +ARL+ G++ +SCQAE NFSAL ++ +R L RK+E+M+L+RLNRHL+
Sbjct: 155 RGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLV 229
BLAST of mRNA_P-littoralis_Contig884.26.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 1.500e-15 Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 1
Query: 76 RGVDGVDVA-GNVVAPVRWPHLSLLARLYAGVDTTSCQAEGNFSALKQVLSDMRAGTLPRKIEQMLLLRLNRHLI 297
RG D V G V +P P+L+ +ARLY G++ TSCQAE NFSAL ++ +R LP K+E+M+ +RLNRHL+
Sbjct: 537 RGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLV 611
BLAST of mRNA_P-littoralis_Contig884.26.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 1.520e-15 Identity = 37/75 (49.33%), Postives = 53/75 (70.67%), Query Frame = 1
Query: 76 RGVDGV-DVAGNVVAPVRWPHLSLLARLYAGVDTTSCQAEGNFSALKQVLSDMRAGTLPRKIEQMLLLRLNRHLI 297
RG D V GNV +P P+L+ +ARL+ G++ +SCQAE NFSAL ++ +R L RK+E+M+L+RLNRHL+
Sbjct: 720 RGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLV 794
BLAST of mRNA_P-littoralis_Contig884.26.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 1.520e-15 Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 1
Query: 76 RGVDGVDVA-GNVVAPVRWPHLSLLARLYAGVDTTSCQAEGNFSALKQVLSDMRAGTLPRKIEQMLLLRLNRHLI 297
RG D V G V +P P+L+ +ARLY G++ TSCQAE NFSAL ++ +R LP K+E+M+ +RLNRHL+
Sbjct: 732 RGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLV 806
BLAST of mRNA_P-littoralis_Contig884.26.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 1.770e-14 Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 1
Query: 76 RGVDGV-DVAGNVVAPVRWPHLSLLARLYAGVDTTSCQAEGNFSALKQVLSDMRAGTLPRKIEQMLLLRLNRHLI 297
RG + V G V AP P+L+ +ARL+ G++ TSCQAE NFSAL ++ +R L RK+E+M+L+RLNRHL+
Sbjct: 415 RGTNSVCPTTGKVTAPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGTLRCNMLARKVERMMLIRLNRHLL 489
BLAST of mRNA_P-littoralis_Contig884.26.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 1.170e-13 Identity = 35/75 (46.67%), Postives = 52/75 (69.33%), Query Frame = 1
Query: 76 RGVDGVDVA-GNVVAPVRWPHLSLLARLYAGVDTTSCQAEGNFSALKQVLSDMRAGTLPRKIEQMLLLRLNRHLI 297
RG D V A G V +P P+L+ +ARL+ G++ TSCQAE NFSAL ++ D+ L ++E+M+L+RLN+HL+
Sbjct: 533 RGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDLCCNMLSHRVERMMLVRLNKHLL 607
BLAST of mRNA_P-littoralis_Contig884.26.1 vs. uniprot
Match: D7G031_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G031_ECTSI) HSP 1 Score: 72.8 bits (177), Expect = 7.740e-13 Identity = 45/92 (48.91%), Postives = 56/92 (60.87%), Query Frame = 1
Query: 58 EVLEYAR--GVDGVDVA-GNVVAPVRWPHLSLLARLYAGVDTTSCQAEGNFSALK--------QVLSDMRAGTLPRKIEQMLLLRLNRHLIP 300
E+L Y R G D +D G VV RWPHL+L+ARLYAG+D+TS Q E +F V S R G P +IEQMLL+RLNRH++P
Sbjct: 809 ELLSYWRLHGTDTLDSGTGEVVLAARWPHLALVARLYAGIDSTSRQGERHFGGGSGGGAELGAAVRSLQRGGMPPWRIEQMLLVRLNRHVVP 900
BLAST of mRNA_P-littoralis_Contig884.26.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 9.670e-13 Identity = 35/80 (43.75%), Postives = 48/80 (60.00%), Query Frame = 1
Query: 61 VLEYARGVDGVD-VAGNVVAPVRWPHLSLLARLYAGVDTTSCQAEGNFSALKQVLSDMRAGTLPRKIEQMLLLRLNRHLI 297
V RG V G V +P P+L+ +ARLY G++ TSCQAE NFSA ++ +R LP K E+ + +RLNRHL+
Sbjct: 321 VSRLERGTSSVSPTTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSARSHLIGQLRCKILPSKFERTMFIRLNRHLV 400
BLAST of mRNA_P-littoralis_Contig884.26.1 vs. uniprot
Match: A0A6H5L256_9PHAE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L256_9PHAE) HSP 1 Score: 67.0 bits (162), Expect = 3.990e-11 Identity = 36/83 (43.37%), Postives = 55/83 (66.27%), Query Frame = 1
Query: 58 EVLEYAR--GVDGVDVAGNVVAPVRWPHLSLLARLYAGVDTTSCQAEGNFSALKQVLSDMRAGTLPRKIEQMLLLRLNRHLIP 300
+VL + R G +D GNVV+ ++P LS+LAR+Y +D+TSCQ+E FS L V +++R +P ++E ++ LR N HLIP
Sbjct: 176 DVLGFWRDAGSPRLDPHGNVVSAAQFPILSMLARVYLCIDSTSCQSEREFSGLGFVYNNLRQAMVPDRVEMVMFLRSNPHLIP 258
BLAST of mRNA_P-littoralis_Contig884.26.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 4.240e-11 Identity = 31/57 (54.39%), Postives = 45/57 (78.95%), Query Frame = 1
Query: 130 PHLSLLARLYAGVDTTSCQAEGNFSALKQVLSDMRAGTLPRKIEQMLLLRLNRHLIP 300
PHL+L+ARL+ G+++TSCQAE NFSAL ++ +R+ LP K+E+++ LRLNR IP
Sbjct: 412 PHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIP 468 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig884.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig884.26.1 >prot_P-littoralis_Contig884.26.1 ID=prot_P-littoralis_Contig884.26.1|Name=mRNA_P-littoralis_Contig884.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp VCRVHERSGRRQRLQLRPTEVLEYARGVDGVDVAGNVVAPVRWPHLSLLAback to top mRNA from alignment at P-littoralis_Contig884:89003..89303- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig884.26.1 ID=mRNA_P-littoralis_Contig884.26.1|Name=mRNA_P-littoralis_Contig884.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=301bp|location=Sequence derived from alignment at P-littoralis_Contig884:89003..89303- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig884:89003..89303- >mRNA_P-littoralis_Contig884.26.1 ID=mRNA_P-littoralis_Contig884.26.1|Name=mRNA_P-littoralis_Contig884.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig884:89003..89303- (Pylaiella littoralis U1_48)back to top |