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Homology
BLAST of mRNA_P-littoralis_Contig884.25.1 vs. uniprot
Match: A0A6H5L5B7_9PHAE (Dymeclin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5B7_9PHAE) HSP 1 Score: 188 bits (477), Expect = 4.620e-47 Identity = 222/425 (52.24%), Postives = 240/425 (56.47%), Query Frame = 1
Query: 436 AAEGLLDLQLEGVGLLLVLLGTQAYGPPPASWNSSPRAXXXXXXXXXXXXXXXGIPDNVFLDALLREASSGVG----RSRGWGTALPRAVFGWFVRRPAAPLGSAASALLNALRAPXXXXXXXXXXISFRRSSAD--TAVDGHLYPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRQPHE----TYRAALVFLVSSALLQLYVATVRGLFSVVGGGPGPARGSSGS--LLPGRGGEEXXXXXXXVTEAPGGAPKEPGEWEGHLTVPSKTASGGSXXXXXXXXXXXXXXXXXXGKGRYPEKVSPLADRGVLLLLVLLRNRGRNNPFRAAVASCVDAELDDNLPSGGGFGSSVGRGGEVRTPATDAAVATGSFGSSAAVAAPVWRSPSATAAAAAAPMRVAFRGLFEAFASTLEASQARS 1674
+ EG DLQLE VGLLLVLLGTQAYGPPP +W SSP XXXXXXXXX DNVFLDAL R GWG ALPRAV GWFVRRPAAP GSA+SAL+NAL I FRRS A DG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Y ALV LV+ ALL +V T+RGLF +VG LL G G VTEAPGGAPKEPGEWEG + GG XXXXXXXXXXXX R +K+SP+ADRGVLLLLVLL NR R+N F AAVA+ VDA+L+DNLP GG FG A MRV+FRGLFEAFASTLE + S
Sbjct: 256 SVEGFSDLQLEAVGLLLVLLGTQAYGPPPPTWGSSPGRXXXXXXXXXV--------DNVFLDALXXXXXXXXXXXXXRPHGWGCALPRAVLGWFVRRPAAPPGSASSALVNALWT-KPPPSSRRVSIPFRRSLAGGGAIADGQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAAYPGALVLLVARALL--HVVTLRGLFGMVGXXXXXXXXXXXXXLLLDGDG----EKGEAEVTEAPGGAPKEPGEWEGRWSQAMDDGEGGCXXXXXXXXXXXXR--------RPRKKISPIADRGVLLLLVLLHNRSRSNAFLAAVATFVDADLEDNLP-GGSFGXXXXXXXXXXXXXXXX----------------XXXXXXXXXXXXATRMRVSFRGLFEAFASTLEGPSSSS 640
BLAST of mRNA_P-littoralis_Contig884.25.1 vs. uniprot
Match: D8LKU0_ECTSI (Dymeclin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU0_ECTSI) HSP 1 Score: 117 bits (294), Expect = 4.230e-24 Identity = 110/225 (48.89%), Postives = 119/225 (52.89%), Query Frame = 1
Query: 982 YRAALVFLVSSALLQLYVATVRGLFSVVGGGPGPARGSSGSLLPGRGGEEXXXXXXXVTEAPGGAPKEPGEWEGHLTVPSKTASGGSXXXXXXXXXXXXXXXXXXGKGRYPEKVSPLADRGVLLLLVLLRNRGRNNPFRAAVASCVDAELDDNLPSGGGFGSSVGRGGEVRTPATDAAVATGSFGSSAAVAAPVWRSPSATAAAAAAPMRVAFRGLFEAFASTLE 1656
Y ALV LV+ ALL YV T+RGL +VGG LL GEE VTEAPGGAPKEPGEWEGH + G XXXXXXXXXXX R +K+SPLADRGVLLLLVLL NR R N FRAAVAS VDA+L+DNLP GG FG A MRV+FRGLFEAFASTLE
Sbjct: 12 YPGALVLLVARALL--YVVTLRGLIGMVGGXXXXXX----XLLLDGDGEEGEAE---VTEAPGGAPKEPGEWEGHWSPAMDDGEGXXXXXXXXXXXXXR---------RPRKKISPLADRGVLLLLVLLHNRSRGNAFRAAVASFVDADLEDNLP-GGSFGXXXXXXXXXXXXXXXXXXXXXXXXX-------------------ATRMRVSFRGLFEAFASTLE 198
BLAST of mRNA_P-littoralis_Contig884.25.1 vs. uniprot
Match: D8LKU1_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU1_ECTSI) HSP 1 Score: 80.9 bits (198), Expect = 1.530e-13 Identity = 65/108 (60.19%), Postives = 68/108 (62.96%), Query Frame = 1
Query: 430 VVAAEGLLDLQLEGVGLLLVLLGTQAYGPPPASWNSSP-----RAXXXXXXXXXXXXXXXGIPDNVFLDALLREASSGVGRSRGWGTALPRAVFGWFVRRPAAPLGSA 738
V++ EG DLQLE VGLLLVLLGTQAYGPP +W S P XXXXXXXXXXXXXXX R GWG ALPRAV GWFVRRPAAP GSA
Sbjct: 126 VLSVEGFSDLQLEAVGLLLVLLGTQAYGPPXXTWGSXPGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPHGWGCALPRAVLGWFVRRPAAPPGSA 233
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 0 |
| Start | 0 |
| Seed ortholog | 2880.D8LKU0 |
| Preferred name | DYM |
| PFAMs | Dymeclin |
| Model size | 1735 |
| Max annot lvl | 2759|Eukaryota |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0001501,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006996,GO:0007030,GO:0007275,GO:0008150,GO:0009987,GO:0010256,GO:0012505,GO:0016043,GO:0019899,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048513,GO:0048731,GO:0048856,GO:0060348,GO:0071840 |
| Exons | 4 |
| Evalue | 6.93e-25 |
| EggNOG OGs | KOG2225@1|root,KOG2225@2759|Eukaryota |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-11_005550.1 |
| Description | Golgi organization |
| Cds size | 1734 |
| COG category | S |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680791772.5358918-CDS-P-littoralis_Contig884:80667..80720 | 1680791772.5358918-CDS-P-littoralis_Contig884:80667..80720 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig884 80668..80720 + |
| 1680791772.5494113-CDS-P-littoralis_Contig884:80792..81301 | 1680791772.5494113-CDS-P-littoralis_Contig884:80792..81301 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig884 80793..81301 + |
| 1680791772.5592864-CDS-P-littoralis_Contig884:81857..82083 | 1680791772.5592864-CDS-P-littoralis_Contig884:81857..82083 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig884 81858..82083 + |
| 1680791772.5690334-CDS-P-littoralis_Contig884:83417..84363 | 1680791772.5690334-CDS-P-littoralis_Contig884:83417..84363 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig884 83418..84363 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig884.25.1 >prot_P-littoralis_Contig884.25.1 ID=prot_P-littoralis_Contig884.25.1|Name=mRNA_P-littoralis_Contig884.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=578bp
SQLRAQFYSRGRRRDADEGTAGGGGGGGGGRGRGDAVIVHGIGRGGEARG GDGFGGGGGGAMITEGQEEEEEEAAADHKRGTAGATGAGAVAGGSAASTD PVVALLASLMALLCATEDGMEGGGGIGGTGRRRKGRGGRVGGGVVAAEGL LDLQLEGVGLLLVLLGTQAYGPPPASWNSSPRAAHGGGQQCATGGGGGGI PDNVFLDALLREASSGVGRSRGWGTALPRAVFGWFVRRPAAPLGSAASAL LNALRAPPPPSSRRRRSISFRRSSADTAVDGHLYPSSSSATVHSPPAPPS TNDVSGASNSDSTTASSGGDRRQPHETYRAALVFLVSSALLQLYVATVRG LFSVVGGGPGPARGSSGSLLPGRGGEEGEEEEEEVTEAPGGAPKEPGEWE GHLTVPSKTASGGSSSGGGGGGGGGAGDGGAGGKGRYPEKVSPLADRGVL LLLVLLRNRGRNNPFRAAVASCVDAELDDNLPSGGGFGSSVGRGGEVRTP ATDAAVATGSFGSSAAVAAPVWRSPSATAAAAAAPMRVAFRGLFEAFAST LEASQARSGGGGGGVSGWGNGDAGGGGG back to topmRNA from alignment at P-littoralis_Contig884:80668..84364+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig884.25.1 ID=mRNA_P-littoralis_Contig884.25.1|Name=mRNA_P-littoralis_Contig884.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3697bp|location=Sequence derived from alignment at P-littoralis_Contig884:80668..84364+ (Pylaiella littoralis U1_48) TCCCAACTCCGCGCTCAGTTTTACTCCCGTGGTAGGCGGCGCGACGCTGA
TGAGTTCGATGTCGATCAGGTAGCGCAGCGTGGGCTTGGACGTGGGAAAG
CAGCAACAGCAGCAGCAGGAGGAAGAGGCACTGCCGGTGGTGGCGGTGGT
GGTGGTGGTGGTCGTGGTCGTGGTGATGCTGTCATTGTTCACGGAATCGG
CAGGGGAGGAGAGGCACGAGGTGGCGATGGCTTCGGCGGTGGCGGCGGTG
GCGCAATGATCACCGAGGGTCAGGAGGAGGAGGAAGAGGAAGCAGCCGCG
GATCACAAGCGGGGGACTGCTGGTGCTACTGGTGCTGGTGCTGTCGCGGG
TGGAAGTGCTGCTTCCACTGACCCCGTGGTTGCACTCTTGGCGTCGCTGA
TGGCCCTCCTGTGCGCCACAGAGGACGGGATGGAAGGAGGGGGAGGGATA
GGGGGCACAGGGAGACGGAGGAAGGGCCGGGGCGGGAGGGTGGGGGGGGG
TGTTGTGGCTGCGGAAGGGTTGTTGGATTTGCAGCTAGAGGGTGTCGGAC
TCCTTCTGGTGTTGCTGGGGACGCAGGCGTACGGGCCGCCGCCGGCTTCT
TGGAACTCCTCACCTCGAGCAGCACACGGGGGCGGTGAGTCGGGAGTCGG
TGCACAGGGAACGGAGTAATCGATTTGTGTCTTATCGAGGTTTAGCAGGT
CATTCGATTGCATGAACGAATTTCGCCTGGGATGAGACATAACAGTAGCA
GTGTCTTGCGCCGGACGTGTGTGCAATGCGGAGTACGGGAGTTTTGACTT
TGGCACCGCAGGAAGTGGTGAGCGAGGTGAGGTGCTCTCTTCTCAGTGAA
CTGCGGCGGCGTTCTGTGCACCTCTCCTGCTCTGCTCCTTTTCTTCTTCT
CTTGTGTACCGTATACAAGCGGTGCGTGTGACCGACACCGCATACGTGTC
GAATGATAACATATTTGAGTGTGTATCCCCGCTGCCGCCGCCGCTGCTGC
TGCTGCTGCTGCGGTCTGTGACCTCCGACTACAGGTACTGCTGTGCAAAC
ATAATCACTCAATTATGGTGGAGCCTACCCCTCCAGCCCAGCATCTCGTT
CGTGTATTATCCCAGCCCCCCGCCCCCGCCCCCCCGCCCCCGCCCTACCC
CTACCCCCACCCCGCCCCCACCTTCCTTTTCCCCTTCCAGGACAACAATG
CGCAACCGGCGGCGGCGGCGGCGGCATCCCCGACAACGTTTTCCTGGACG
CCCTCCTGAGGGAGGCGTCGAGCGGCGTCGGTCGGTCTCGCGGCTGGGGG
ACCGCCCTGCCGCGGGCGGTCTTCGGCTGGTTCGTTCGCCGGCCCGCCGC
TCCGCTAGGGTCGGCGGCGAGCGCTCTGCTCAACGCCTTGAGGGCCCCGC
CACCGCCGTCCTCGAGGTATGATATATATACGTATGTGTACCGTATATGA
AGCACTACAGGTACATGCAAAGATCCCCCCCCCCCCCCCCCCCCACACAC
ACGTCCCTCGGTCCCCGAAACCGGTTCTGAAAGCTCGATGTCTTTGCGCC
GAGAAAAGAAGAACGAGAGAGCCAGCCGCGCCCCCCCTCGCCCCCCCCCA
GAGGCAGGCAATCGTTGGAATTTATTTTCGTGATGTATTTCAAGAGAGCT
CCGATATCGTACCCGAAAACCGAACACGTTCAGTGTCAAGTTCGTGTCGG
CGTTCTCCTTCGTTGTCGGGGTAAAGTCCCGCGTCAGAGAAATCGATGCC
GGGGGTTCCGGCGGTGGTGCAGCTAGCTAGACAGCAGTGTTGTAACGTGG
GATAAGCAAGTGAGGTGCATACCGGTGTCGTGATCTCCGTATGTATATGT
ATCGGCACTTTTTTTTCACTACCCCTTTAGTCCATTTATTCTCCCTCCTC
GAGTTGGAGTGGGCGTTTTGTGTCGTGTGCGATGCGCCGCGTGCCAGTGA
TGTCCCACCCGTCTCATCACGCACGTGGAGAAACAGACACGCAAGACAAA
AACGACGATGAGTTGTTTACCGGTACAGACTGCAAGTGGTGCTTCAGAAG
ATGTGTACGGCATGTGCATGTTGGCATACTGCCTCGTAAATACCGATACC
TACAACAGCGGAGAATACAACAGCTGTGCGGCGGAGTCAGCGGTCAGCGG
AAGGTATCGGCAAGGCGTCGAGTACAGCGGAGGAACGCGAAATGTTGATC
CGGAACATCGTCCTCTGCCTGCACCAGGACCATGGGTGCTACCTGTACTC
CCCTCCCTCCGGCCAGTGCTGTACAACTTTTGTTTTCTTTTCCGTGCAGA
AGAATGTGTTGTTTTTTTCTCCCCCTGCCCAGTTCGAATCTCGGCGCAGT
CACACGATTTTTTTTTTTTTTTCTCGCACTACGCGTGAAAAAAAAAAAAA
TCGTGAGTGGAAAGCAATTAATTCGTGAGTCCAACAAAATTCGATTTAAT
CATCGACTAGGGGAAGGAAGTGCTGACCCTTTTATTTCTCGCCATAAAAT
CACCGCAGTGGGAAATGGAGAAAAAAGAAAAAAAATCCCCTGTGTTGACT
CCCTCCCGTGTGGCCCCGGCTGGAGCGTCGATGATACCTACTCTCCCGAA
GGGGGCGTAGAGTGGCGTCCAGAATATATGGGACGATCACACACAACAAC
GCACGCATACCAGCCCCAAACACCAAAACCAACACCGCAACCCCCACTCC
CCCCCCGCCCATTTCCACTCCGTTATCCAATGACACCAAACAAACCACAG
ACGACGAAGATCGATTTCGTTCAGACGTTCTTCGGCCGACACCGCCGTCG
ACGGCCATCTTTATCCAAGTTCTTCCTCCGCTACCGTTCATTCTCCTCCT
GCTCCACCATCGACGAACGACGTTAGCGGTGCCAGCAATAGCGATAGCAC
CACCGCCTCCAGCGGGGGCGACAGGAGGCAGCCGCACGAGACCTACCGCG
CCGCCCTCGTATTTTTGGTCTCCAGCGCCCTACTCCAGCTCTACGTCGCA
ACCGTTCGCGGCCTCTTCAGCGTGGTTGGGGGCGGCCCCGGCCCCGCCAG
GGGCAGCAGCGGCAGCCTGTTGCCAGGGAGGGGCGGCGAGGAGGGGGAGG
AAGAAGAAGAGGAAGTCACCGAGGCCCCGGGGGGGGCACCGAAGGAACCC
GGGGAGTGGGAAGGACACCTTACTGTGCCTTCAAAGACGGCTAGTGGTGG
CAGCAGCAGCGGCGGTGGCGGCGGCGGTGGTGGCGGTGCTGGGGACGGGG
GTGCCGGGGGGAAAGGCCGATACCCTGAGAAGGTCTCGCCGCTAGCGGAC
CGCGGGGTGCTCCTCCTGCTGGTACTGCTCCGGAATCGGGGGCGAAACAA
CCCTTTTCGTGCCGCGGTGGCGTCGTGCGTGGACGCGGAGCTGGACGATA
ACCTGCCCTCAGGGGGCGGCTTCGGCAGCAGCGTCGGTCGCGGCGGCGAA
GTGCGAACACCAGCGACTGACGCTGCTGTTGCGACCGGAAGCTTCGGATC
CTCAGCCGCAGTAGCAGCGCCCGTGTGGCGCTCGCCCTCTGCTACTGCTG
CTGCTGCCGCTGCGCCGATGCGAGTTGCGTTCCGTGGCCTGTTTGAGGCT
TTTGCTTCTACGCTCGAAGCGTCGCAGGCTCGCAGCGGCGGCGGCGGCGG
TGGCGTTAGCGGGTGGGGCAACGGCGACGCCGGAGGAGGAGGAGGAG back to topCoding sequence (CDS) from alignment at P-littoralis_Contig884:80668..84364+ >mRNA_P-littoralis_Contig884.25.1 ID=mRNA_P-littoralis_Contig884.25.1|Name=mRNA_P-littoralis_Contig884.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1734bp|location=Sequence derived from alignment at P-littoralis_Contig884:80668..84364+ (Pylaiella littoralis U1_48) TCCCAACTCCGCGCTCAGTTTTACTCCCGTGGTAGGCGGCGCGACGCTGA TGAAGGCACTGCCGGTGGTGGCGGTGGTGGTGGTGGTGGTCGTGGTCGTG GTGATGCTGTCATTGTTCACGGAATCGGCAGGGGAGGAGAGGCACGAGGT GGCGATGGCTTCGGCGGTGGCGGCGGTGGCGCAATGATCACCGAGGGTCA GGAGGAGGAGGAAGAGGAAGCAGCCGCGGATCACAAGCGGGGGACTGCTG GTGCTACTGGTGCTGGTGCTGTCGCGGGTGGAAGTGCTGCTTCCACTGAC CCCGTGGTTGCACTCTTGGCGTCGCTGATGGCCCTCCTGTGCGCCACAGA GGACGGGATGGAAGGAGGGGGAGGGATAGGGGGCACAGGGAGACGGAGGA AGGGCCGGGGCGGGAGGGTGGGGGGGGGTGTTGTGGCTGCGGAAGGGTTG TTGGATTTGCAGCTAGAGGGTGTCGGACTCCTTCTGGTGTTGCTGGGGAC GCAGGCGTACGGGCCGCCGCCGGCTTCTTGGAACTCCTCACCTCGAGCAG CACACGGGGGCGGACAACAATGCGCAACCGGCGGCGGCGGCGGCGGCATC CCCGACAACGTTTTCCTGGACGCCCTCCTGAGGGAGGCGTCGAGCGGCGT CGGTCGGTCTCGCGGCTGGGGGACCGCCCTGCCGCGGGCGGTCTTCGGCT GGTTCGTTCGCCGGCCCGCCGCTCCGCTAGGGTCGGCGGCGAGCGCTCTG CTCAACGCCTTGAGGGCCCCGCCACCGCCGTCCTCGAGACGACGAAGATC GATTTCGTTCAGACGTTCTTCGGCCGACACCGCCGTCGACGGCCATCTTT ATCCAAGTTCTTCCTCCGCTACCGTTCATTCTCCTCCTGCTCCACCATCG ACGAACGACGTTAGCGGTGCCAGCAATAGCGATAGCACCACCGCCTCCAG CGGGGGCGACAGGAGGCAGCCGCACGAGACCTACCGCGCCGCCCTCGTAT TTTTGGTCTCCAGCGCCCTACTCCAGCTCTACGTCGCAACCGTTCGCGGC CTCTTCAGCGTGGTTGGGGGCGGCCCCGGCCCCGCCAGGGGCAGCAGCGG CAGCCTGTTGCCAGGGAGGGGCGGCGAGGAGGGGGAGGAAGAAGAAGAGG AAGTCACCGAGGCCCCGGGGGGGGCACCGAAGGAACCCGGGGAGTGGGAA GGACACCTTACTGTGCCTTCAAAGACGGCTAGTGGTGGCAGCAGCAGCGG CGGTGGCGGCGGCGGTGGTGGCGGTGCTGGGGACGGGGGTGCCGGGGGGA AAGGCCGATACCCTGAGAAGGTCTCGCCGCTAGCGGACCGCGGGGTGCTC CTCCTGCTGGTACTGCTCCGGAATCGGGGGCGAAACAACCCTTTTCGTGC CGCGGTGGCGTCGTGCGTGGACGCGGAGCTGGACGATAACCTGCCCTCAG GGGGCGGCTTCGGCAGCAGCGTCGGTCGCGGCGGCGAAGTGCGAACACCA GCGACTGACGCTGCTGTTGCGACCGGAAGCTTCGGATCCTCAGCCGCAGT AGCAGCGCCCGTGTGGCGCTCGCCCTCTGCTACTGCTGCTGCTGCCGCTG CGCCGATGCGAGTTGCGTTCCGTGGCCTGTTTGAGGCTTTTGCTTCTACG CTCGAAGCGTCGCAGGCTCGCAGCGGCGGCGGCGGCGGTGGCGTTAGCGG GTGGGGCAACGGCGACGCCGGAGGAGGAGGAGGA back to top
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