mRNA_P-littoralis_Contig884.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig884.1.1
Unique NamemRNA_P-littoralis_Contig884.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig884.1.1 vs. uniprot
Match: D8LKV1_ECTSI (Coiled-coil domain-containing protein 94 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKV1_ECTSI)

HSP 1 Score: 479 bits (1234), Expect = 3.040e-160
Identity = 310/454 (68.28%), Postives = 331/454 (72.91%), Query Frame = 1 
Query:  331 MSTLAAARADNMYYPPEWRPEYGGISKFQGSNGHNQYEKYGKIRFELPVHGWCLGCGRHIGRGTRFNATKDQAGTYYSTKIWQFSMKCPSCSTVMIIKTDPKNTDYEYVEGIRKKDMAFDPEEAETQRVQDSEVSKKLAVDPLYRLEHEQTDKRRAASRKTVLTQLTELADAHGQDDYSSNARLRQGMRERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARGVKYRSRYKGFRTGEKAKMAAITGESIFGLDSESPEQARLKAVLVKAAKLGLKTRGMRLLKPGAGXXXXXXXXXXXXHGSS-----SSCGTGRTRRFSAEKHGQDSDRSTRLRRGAGEIATRSGME----------GEGRGERVGAGVVGVDD-QPVKEIDGGDVELAGEGVRRGLLQAREAEVSTNKADSL----LRKKRRKRGSLSKPSWAAAGTAFNNGGLAAIASLY 1632
            MSTLAAARADNMYYPPEWRPEYGGISKFQGSNGHNQYEKYGKIRFELP HGWCLGCGRHIGRGTRFNATKDQAGTYYSTKIWQFSMKCPSCS VM+IKTDPKNT YEYVEGIRKKDM FDPEEAETQRVQDSEVSK+LAVDPLYRLEHEQ DKRRAASRKTVLT+LTELADAH QDDYSSNARLRQ MR  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX AR VKYRSR+KGFRTGEKAKMAAITGESIFG   ES EQAR KAVLVKA+KLGLKTRGMRLL+P  G               S     SSC  G     SA +H +  D S   R   G    R  ++           +GRG+      VG D    +  +DG  V L G+G R    + R    ++   D       +K+RRK G+        AG    NGGLAAIASLY
Sbjct:    1 MSTLAAARADNMYYPPEWRPEYGGISKFQGSNGHNQYEKYGKIRFELPDHGWCLGCGRHIGRGTRFNATKDQAGTYYSTKIWQFSMKCPSCSNVMVIKTDPKNTGYEYVEGIRKKDMEFDPEEAETQRVQDSEVSKQLAVDPLYRLEHEQRDKRRAASRKTVLTRLTELADAHAQDDYSSNARLRQTMRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARSVKYRSRHKGFRTGEKAKMAAITGESIFGSGRESSEQARRKAVLVKASKLGLKTRGMRLLRPDQGSRCGDGERAATQRAPSRSLGASSCSRGSISGASACRHSEAPDGSRSSRSSDGSSILREDVKKRRRRPETAGAQGRGDGAQGVFVGSDAAHGIGVVDGVGVVLVGKGERPSSAEERSISQASRLKDEAGVLPPKKRRRKHGT--------AGGNAGNGGLAAIASLY 446
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BLAST of mRNA_P-littoralis_Contig884.1.1 vs. uniprot
Match: A0A835Z9T3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9T3_9STRA)

HSP 1 Score: 231 bits (590), Expect = 9.630e-66
Identity = 116/253 (45.85%), Postives = 156/253 (61.66%), Query Frame = 1 
Query:  331 MSTLAAARADNMYYPPEWRPEYGGISKFQGSNGHNQYEKYGKIRFELPVHGWCLGCGRHIGRGTRFNATKDQAGTYYSTKIWQFSMKCPSCSTVMIIKTDPKNTDYEYVEGIRKKDMAFDPEEAETQRVQDSEVSKKLAVDPLYRLEHEQTDKRRAASRKTVLTQLTELADAHGQDDYSSNARLRQGMRERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARGVK--YRSRYKGFRTGEKAKMAAITGESIF 1083
            MS+LAA +AD  YYPP W P++G +SK  GS G NQYE+YG IRFELP + WC GCGR +G+GTRFNA K++AG Y++T +W F M+CPSCST  +IKTDPKN+DYE+  GIR+K+  FD E+AE   + D +   +LA DP+YRLEH   D RRA ++KT +T+L + ++     DY +NA LR+  R                               AAR +   + SR +  R  EK+++AAI   SIF
Sbjct:    1 MSSLAAVQADGFYYPPTWEPKHGSVSKAAGSKGSNQYEQYGVIRFELPYNAWCEGCGRPLGKGTRFNAKKEKAGAYFTTTVWAFHMRCPSCSTEFVIKTDPKNSDYEFSAGIRRKEQHFDAEDAEAPVLADEDTQARLATDPMYRLEHADADVRRADAKKTRITRLMDWSNDVRGSDYDANAALRRAWRGARRERVALEAEAQARGLGVELLPHSEADAAAARAMDLGHSSRLRTMRATEKSRLAAIRASSIF 253
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BLAST of mRNA_P-littoralis_Contig884.1.1 vs. uniprot
Match: A0A7S3H3M3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3M3_9STRA)

HSP 1 Score: 206 bits (524), Expect = 2.750e-58
Identity = 104/194 (53.61%), Postives = 134/194 (69.07%), Query Frame = 1 
Query:  331 MSTLAAARADNMYYPPEWRPEYGGISKFQGSNGHNQYEKYGKIRFELPVHGWCLGCGRHIGRGTRFNATKDQAGTYYSTKIWQFSMKC--PSCSTVMIIKTDPKNTDYEYVEGIRKKDMAFDPEEAETQRVQDSEVSKKL-AVDPLYRLEHEQTDKRRAASRKTVLTQLTELADAHGQDDYSSNARLRQGMRER 903
            MS+LAAARADN Y+PPEW P+ GGISKFQGS G NQYE+ G IRFELP  GWCLGCG H+ +G RFNA K++ G Y++T+IW F MKC   SC+    I TDPKN  Y++ EGIRK +  F P+  ++  V  S+ +K+L A DP++RL+H + D++R  S K  L  LTEL D H ++ Y  NA LR   R+R
Sbjct:    1 MSSLAAARADNFYFPPEWTPQMGGISKFQGSKGANQYEQKGIIRFELPFDGWCLGCGVHMTKGLRFNAKKEKEGKYFTTQIWSFHMKCFSTSCTQKYKILTDPKNCTYDFAEGIRKHEQDFTPDVDDSLIVATSDETKQLIANDPMFRLQHNEEDRKRVLSAKEHLEALTELQDEHHKNYYDVNAMLRNKNRKR 194
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BLAST of mRNA_P-littoralis_Contig884.1.1 vs. uniprot
Match: A0A482S855_9ARCH (DUF572 domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S855_9ARCH)

HSP 1 Score: 198 bits (503), Expect = 1.210e-55
Identity = 97/186 (52.15%), Postives = 125/186 (67.20%), Query Frame = 1 
Query:  331 MSTLAAARADNMYYPPEWRPEYGGISKFQGSNGHNQYEKYGKIRFELPVHGWCLGCGRHIGRGTRFNATKDQAGTYYSTKIWQFSMKCPSCSTVMIIKTDPKNTDYEYVEGIRKKDMAFDPEEAETQ-RVQDSEVSKKLAVDPLYRLEHEQTDKRRAASRKTVLTQLTELADAHGQDDYSSNARLR 885
            MS+LAA+RADN YYPPEWRPE GGISKFQGS G NQYE+YG IRFELP   WCL C RH+G+G RFNA KD+AG Y+ST IW+F  KC SC    +I+T+P+++ Y+YVEG+RK +    P+EA+    V   EV  K A D ++RLE      ++  + K  L  L +L     + DY+ N+ LR
Sbjct:    1 MSSLAASRADNFYYPPEWRPEMGGISKFQGSKGKNQYEQYGIIRFELPFDAWCLKCKRHMGKGLRFNAKKDKAGKYFSTTIWEFKTKCYSCDQKFVIRTNPQDSTYDYVEGLRKHEQDAKPDEADGSIEVLSDEVKMKAATDAMFRLERGTETSQQVRTAKQRLEDLEDLQAEVYKQDYAMNSLLR 186
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BLAST of mRNA_P-littoralis_Contig884.1.1 vs. uniprot
Match: C5YGN5_SORBI (Uncharacterized protein n=26 Tax=Poaceae TaxID=4479 RepID=C5YGN5_SORBI)

HSP 1 Score: 196 bits (499), Expect = 1.850e-53
Identity = 117/274 (42.70%), Postives = 147/274 (53.65%), Query Frame = 1 
Query:  331 MSTLAAARADNMYYPPEWRPEYGGISKFQGSNGHNQYEKYGK-------IRFELPVHGWCLGCGRHIGRGTRFNATKDQAGTYYSTKIWQFSMKCPSCSTVMIIKTDPKNTDYEYVEGIRKKDMAFDPEEAETQRVQDSEVSKKLAVDPLYRLEHEQTDKRRAASRKTVLTQLTELADAHGQDDYSSNARLRQGMRERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARGVKYRSRYKGFRTGEKAKMAAITGESIFGLDSESPEQARLKAVL 1131
            MS+LAAARADN YYPPEW P+ GG++KF G   H   E+  K       IRFE+P + WC GC   I +G RFNA K Q G YYSTKIW F+MK P C   ++I+TDPKNT+Y  + G +KK   FD E+AET  +   E   KLA DP+YRLEH++ D R+    + VL +L  L+D+   DDY+ N  LR  +R +                             AA  VK+ SR   F    K K AAI   SIF   S S    +L  VL
Sbjct:    1 MSSLAAARADNFYYPPEWSPKKGGLNKFHGQ--HALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHEIVIQTDPKNTEYVIISGAQKKTEDFDVEDAETLLLPADEDRDKLA-DPMYRLEHQEEDLRKKKEAEPVLVRLQRLSDSRHSDDYALNRALRDRLRSQKKRVAEEKKSARKMGLGVRLLPPSAADAAAAASVKFASR---FEKNRKDKRAAIKAASIFPESSSSASNCKLDLVL 268
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BLAST of mRNA_P-littoralis_Contig884.1.1 vs. uniprot
Match: A0A3B5ZQ27_WHEAT (Uncharacterized protein n=17 Tax=Pooideae TaxID=147368 RepID=A0A3B5ZQ27_WHEAT)

HSP 1 Score: 192 bits (487), Expect = 9.780e-52
Identity = 116/274 (42.34%), Postives = 145/274 (52.92%), Query Frame = 1 
Query:  331 MSTLAAARADNMYYPPEWRPEYGGISKFQGSNGHNQYEKYGK-------IRFELPVHGWCLGCGRHIGRGTRFNATKDQAGTYYSTKIWQFSMKCPSCSTVMIIKTDPKNTDYEYVEGIRKKDMAFDPEEAETQRVQDSEVSKKLAVDPLYRLEHEQTDKRRAASRKTVLTQLTELADAHGQDDYSSNARLRQGMRERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARGVKYRSRYKGFRTGEKAKMAAITGESIFGLDSESPEQARLKAVL 1131
            MSTLAAARADN YYPPEW P+ GG++KF G   H   E+  K       IRFE+P + WC GC   IG+G RFNA K Q G YYSTKIW FSMK P C   ++I TDPKNT+Y  + G ++K   FD E+AET  +   E   KLA DP+Y+LEH+  D R+    + VL +L  L+D+   DDYS N  LR  +R +                             AA  V++ S    F    K K AAI   SIF   S S  + +L   L
Sbjct:    1 MSTLAAARADNFYYPPEWSPKKGGLNKFHGQ--HALRERARKLDQGILIIRFEMPFNVWCGGCSSMIGKGVRFNAEKKQVGNYYSTKIWSFSMKSPCCQHEIVIHTDPKNTEYVIISGAQRKTEDFDVEDAETLLLPADEERDKLA-DPMYKLEHQGEDIRKKKEEEPVLVRLQRLSDSRHSDDYSLNRTLRDRLRSQKKRVAEEKKSARKMGLGVRLLPPSAEDAAAAARVRFASN---FEKNRKDKRAAIKAASIFPEPSGSASKDKLDLAL 268
[Close]
BLAST of mRNA_P-littoralis_Contig884.1.1 vs. uniprot
Match: A0A7S3PEB4_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PEB4_9STRA)

HSP 1 Score: 190 bits (483), Expect = 2.040e-51
Identity = 91/191 (47.64%), Postives = 129/191 (67.54%), Query Frame = 1 
Query:  331 MSTLAAARADNMYYPPEWRPE-YGGISKFQGSNGHNQYEKYGKIRFELPVHGWCLGCGRHIGRGTRFNATKDQAGTYYSTKIWQFSMKCPSCSTVMIIKTDPKNTDYEYVEGIRKKDMAFDPEEAETQRVQDSEVSKKLAVDPLYRLEHEQTDKRRAASRKTVLTQLTELADAHGQDDYSSNARLRQGMRE 900
            MS+LAAA+AD  Y+PPE+ P  +GG+SK+ GS G NQ+EK G +RFELP + WCLGC R IG+GTR+NA K++AG Y++T+IW+F  KC +C    +I+TDPKN DYE+V G+++ D     E AET  + D +  ++L  DPL+ LE+ + +K +AA     + QL  L DA  +DD+  N  LR   R+
Sbjct:    1 MSSLAAAQADGFYHPPEYDPRRHGGLSKYNGSTGSNQWEKRGIVRFELPYNAWCLGCKRAIGQGTRYNAKKEKAGKYFTTQIWEFHTKCATCPQKFVIRTDPKNADYEFVSGLKRIDSQPSAESAETIALLDDKTKERLETDPLFSLEYTEGNKIKAARHAKQIVQLQALNDATKRDDFKMNRALRAKARD 191
[Close]
BLAST of mRNA_P-littoralis_Contig884.1.1 vs. uniprot
Match: A0A2J6LV87_LACSA (Uncharacterized protein n=3 Tax=Lactuca TaxID=4235 RepID=A0A2J6LV87_LACSA)

HSP 1 Score: 191 bits (486), Expect = 2.420e-51
Identity = 112/271 (41.33%), Postives = 149/271 (54.98%), Query Frame = 1 
Query:  334 STLAAARADNMYYPPEWRPEYGGISKFQGSNGHNQYEKYGK-------IRFELPVHGWCLGCGRHIGRGTRFNATKDQAGTYYSTKIWQFSMKCPSCSTVMIIKTDPKNTDYEYVEGIRKKDMAFDPEEAETQRVQDSEVSKKLAVDPLYRLEHEQTDKRRAASRKTVLTQLTELADAHGQDDYSSNARLRQGMRERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARGVKYRSRYKGFRTGEKAKMAAITGESIF-GLDSESPEQARLK 1122
            STLAAARADN YYPPEW P+ GG++KF G   H   E+  K       IRFE+P H WC GC   I +G RFNA K Q G YYSTKIW F+MK P C  V++I+TDPKN +Y  + G +KK   F+PE+AET  +Q  E   KL VDP YRLEH++ D ++    + +L +L +++D+   DDYS N  LR  +R +                             AA+ VK+ S    F      K A I   SIF G+ S + +++ L+
Sbjct:   30 STLAAARADNFYYPPEWEPKKGGLNKFNGQ--HALRERARKLDQGILIIRFEMPYHIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKAPCCKHVIVIQTDPKNCEYLVISGAQKKVEEFEPEDAETMVLQVEEEKNKL-VDPFYRLEHQEEDLKKKKEAEPLLVRLQKVSDSRHLDDYSLNKSLRAKLRSQKKRVAEEETSARKMGLGIRLLPPSEQDIVAAKRVKFSSN---FNKNRDEKRALIKSSSIFSGVYSSNSKRSELE 294
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BLAST of mRNA_P-littoralis_Contig884.1.1 vs. uniprot
Match: B4F842_MAIZE (Nuclear protein-like n=1 Tax=Zea mays TaxID=4577 RepID=B4F842_MAIZE)

HSP 1 Score: 184 bits (468), Expect = 1.500e-50
Identity = 97/196 (49.49%), Postives = 124/196 (63.27%), Query Frame = 1 
Query:  331 MSTLAAARADNMYYPPEWRPEYGGISKFQGSNGHNQYEKYGK-------IRFELPVHGWCLGCGRHIGRGTRFNATKDQAGTYYSTKIWQFSMKCPSCSTVMIIKTDPKNTDYEYVEGIRKKDMAFDPEEAETQRVQDSEVSKKLAVDPLYRLEHEQTDKRRAASRKTVLTQLTELADAHGQDDYSSNARLRQGMR 897
            MS+LAAARADN YYPPEW P+ GG++KF G   H   E+  K       IRFE+P + WC GC   I +G RFNA K Q G YYSTKIW F+MK P C   ++I+TDPKNT+Y  + G +KK   FD E+AET  +   E   KLA DP+YRLEH++ D R+    + VL +L  L+D+   DDY+ N  LR  +R
Sbjct:    1 MSSLAAARADNFYYPPEWSPKKGGLNKFHGQ--HALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHEIVIQTDPKNTEYVIISGAQKKTEDFDVEDAETLLLPADEDRDKLA-DPMYRLEHQEEDLRKKKEAEPVLVRLQRLSDSRHSDDYALNRALRDRLR 193
[Close]
BLAST of mRNA_P-littoralis_Contig884.1.1 vs. uniprot
Match: J3LCB7_ORYBR (Uncharacterized protein n=4 Tax=BOP clade TaxID=359160 RepID=J3LCB7_ORYBR)

HSP 1 Score: 188 bits (478), Expect = 1.720e-50
Identity = 111/274 (40.51%), Postives = 149/274 (54.38%), Query Frame = 1 
Query:  331 MSTLAAARADNMYYPPEWRPEYGGISKFQGSNGHNQYEKYGK-------IRFELPVHGWCLGCGRHIGRGTRFNATKDQAGTYYSTKIWQFSMKCPSCSTVMIIKTDPKNTDYEYVEGIRKKDMAFDPEEAETQRVQDSEVSKKLAVDPLYRLEHEQTDKRRAASRKTVLTQLTELADAHGQDDYSSNARLRQGMRERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARGVKYRSRYKGFRTGEKAKMAAITGESIFGLDSESPEQARLKAVL 1131
            MS+LAAARADN YYPPEW P+ GG++KF G   H   E+  K       IRFE+P + WC GC   I +G RFNA K Q G YYSTKIW F+MK P C   ++I+TDPKNT+Y  + G ++K   +D E+AET  +   E   KLA DP+Y+LEH++ D R+    + VL +L  L+D+   DDY+ N  LR  +R +                             AA  VK+ S+++  R   + K AAI   SIF   S S  + +L   L
Sbjct:    1 MSSLAAARADNFYYPPEWSPKKGGLNKFHGQ--HALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKQEIVIQTDPKNTEYVIISGAQRKTEDYDVEDAETLLLPADEERDKLA-DPMYKLEHQEEDLRKKKEAEPVLVRLQRLSDSRHSDDYALNRALRDRLRSQKKRVAEERKSARKMGLGVRLLPPSAEDATAAAYVKFASKFEKSR---RDKRAAIKAASIFPESSSSTSKNKLDLAL 268
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig884.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKV1_ECTSI3.040e-16068.28Coiled-coil domain-containing protein 94 n=2 Tax=E... [more]
A0A835Z9T3_9STRA9.630e-6645.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3H3M3_9STRA2.750e-5853.61Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A482S855_9ARCH1.210e-5552.15DUF572 domain-containing protein (Fragment) n=1 Ta... [more]
C5YGN5_SORBI1.850e-5342.70Uncharacterized protein n=26 Tax=Poaceae TaxID=447... [more]
A0A3B5ZQ27_WHEAT9.780e-5242.34Uncharacterized protein n=17 Tax=Pooideae TaxID=14... [more]
A0A7S3PEB4_9STRA2.040e-5147.64Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A2J6LV87_LACSA2.420e-5141.33Uncharacterized protein n=3 Tax=Lactuca TaxID=4235... [more]
B4F842_MAIZE1.500e-5049.49Nuclear protein-like n=1 Tax=Zea mays TaxID=4577 R... [more]
J3LCB7_ORYBR1.720e-5040.51Uncharacterized protein n=4 Tax=BOP clade TaxID=35... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig884contigP-littoralis_Contig884:3246..8845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LKV1
PFAMsDUF572
Model size2207
Max annot lvl2759|Eukaryota
KEGG koko:K13115
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.54e-165
EggNOG OGsCOG5134@1|root,KOG2990@2759|Eukaryota
Ec32 ortholog descriptionCWC16 protein
Ec32 orthologEc-11_005670.1
Descriptionresponse to virus
Cds size1305
COG categoryU
BRITEko00000,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig884.1.1prot_P-littoralis_Contig884.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig884 3818..8515 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791771.6758595-UTR-P-littoralis_Contig884:3245..38171680791771.6758595-UTR-P-littoralis_Contig884:3245..3817Pylaiella littoralis U1_48UTRP-littoralis_Contig884 3246..3817 -
1680791771.7485914-UTR-P-littoralis_Contig884:8515..88451680791771.7485914-UTR-P-littoralis_Contig884:8515..8845Pylaiella littoralis U1_48UTRP-littoralis_Contig884 8516..8845 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791771.6888673-CDS-P-littoralis_Contig884:3817..45131680791771.6888673-CDS-P-littoralis_Contig884:3817..4513Pylaiella littoralis U1_48CDSP-littoralis_Contig884 3818..4513 -
1680791771.712928-CDS-P-littoralis_Contig884:6476..66671680791771.712928-CDS-P-littoralis_Contig884:6476..6667Pylaiella littoralis U1_48CDSP-littoralis_Contig884 6477..6667 -
1680791771.726296-CDS-P-littoralis_Contig884:7378..76101680791771.726296-CDS-P-littoralis_Contig884:7378..7610Pylaiella littoralis U1_48CDSP-littoralis_Contig884 7379..7610 -
1680791771.7357635-CDS-P-littoralis_Contig884:8329..85151680791771.7357635-CDS-P-littoralis_Contig884:8329..8515Pylaiella littoralis U1_48CDSP-littoralis_Contig884 8330..8515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig884.1.1

>prot_P-littoralis_Contig884.1.1 ID=prot_P-littoralis_Contig884.1.1|Name=mRNA_P-littoralis_Contig884.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=435bp
MSTLAAARADNMYYPPEWRPEYGGISKFQGSNGHNQYEKYGKIRFELPVH
GWCLGCGRHIGRGTRFNATKDQAGTYYSTKIWQFSMKCPSCSTVMIIKTD
PKNTDYEYVEGIRKKDMAFDPEEAETQRVQDSEVSKKLAVDPLYRLEHEQ
TDKRRAASRKTVLTQLTELADAHGQDDYSSNARLRQGMRERKKQEREREE
EAMAKGLGIRLATPIPADADAARGVKYRSRYKGFRTGEKAKMAAITGESI
FGLDSESPEQARLKAVLVKAAKLGLKTRGMRLLKPGAGGGGGGRATRQQS
HGSSSSCGTGRTRRFSAEKHGQDSDRSTRLRRGAGEIATRSGMEGEGRGE
RVGAGVVGVDDQPVKEIDGGDVELAGEGVRRGLLQAREAEVSTNKADSLL
RKKRRKRGSLSKPSWAAAGTAFNNGGLAAIASLY*
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mRNA from alignment at P-littoralis_Contig884:3246..8845-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig884.1.1 ID=mRNA_P-littoralis_Contig884.1.1|Name=mRNA_P-littoralis_Contig884.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5600bp|location=Sequence derived from alignment at P-littoralis_Contig884:3246..8845- (Pylaiella littoralis U1_48)
CGGAGGAGTGCGCCCGCGGGGAGTAATACAGACAGATACATGAGCTTGTG
CGCTTTGATTTGTGGATAGGGACACAAAGCGCCTTCTTTCGTTATTGCGA
ACGGCTGGAGTAAGTCAAGGTAGCACCTACGATCTCTCTGGTTAAGGGAG
GCACGTGGCATACTAAATAGGCGATCTCAGCATTCAGGGGACAGGCAACA
CGAAAACACCAACAAGCAACGCCCGCCGACGACAGGGACAGCGAGAGCTG
TGTGCTATCCAGCGACACAAGGGATTCACAACGGTAGCACACCCCAAAAC
TAGGGCTATTCCTCTGCTTCCGCTGCAACCATGTCTACACTCGCGGCCGC
CCGGGCCGACAACATGTATTATCCTCCGGAGTGGAGGCCGGAGTACGGGG
GCATCTCCAAGTTTCAGGGCTCGAACGGCCACAACCAGTACGAGAAGTAC
GGCAAGATTCGCTTCGAGCTTCCCGTCCACGGGTGGTGCCTGGGATGTGG
GCGACACATCGGCAGAGTGAGAATCGAATTTCAAGTCCAAAGCACTTTAT
GTATATAGTGGAGGGTTCATTTGAAGATTTACAAGGCAGTGCAGTACGAG
TATCATATCATAGAAGGCTAAAGAATACTTCTGTAACGATGGTCCGATTG
TGTGTTGTCTACAGCAGTAGAGTTCGGACGTTTGTGTACAAGATGACAGG
CGACCGGCGCAGCGCATAAGTCTGCTTTGTACAACATGGAACGCACATTC
GTTGGTGTGTTGTCACCAGCATTGGGCAAGCTTATGTATGTACGAGTACG
TGCTCTCGAAGCATGATGCAGAGAACAAAGGAGCGCGACACTCGGCACAC
GAACAGCAGTGTACCTCGATTTGAGATTTTAGACCTGCGAGTATTGTAAA
TTGAACAGCCGCAGCAACAGAGGCTTCTCGTATGGTATGATACTGCGTAT
CGTATGGGATAGAGTGCTGTCTTGTGTGGGCCGCGCTGTGACCTTGTTTT
TGGGCACGATATAATAGGTGTCGGCGCTTGTAAGATACATATCCCCGAAA
CCGTCTTCCACCTGGAGCGGCAACGCTGCAAGAATGTACGGGTACCTTTC
AAGCGTAAGATGTGTTTGAAAACTTCAAGACCCACCTCACATCTCACTCC
AAACCAACCCGCCCGGTGCGTGTTTGAATGAACGCACGCACACTCACCCA
CTCATCCACCCACCCACACCATCGCTCCACCCCAGGGAACGCGATTCAAT
GCCACCAAGGACCAGGCGGGCACGTACTACAGCACCAAGATTTGGCAGTT
TTCCATGAAGTGCCCCTCTTGCAGCACGGTAATGATCATCAAGACCGACC
CCAAGAATACGGATTATGAGTACGTCGAGGGCATCCGCAAGAAGGACATG
GCCTTCGACCCCGAGGAGGCGGAGACCCAGCGCGTGCAGGACAGCGAGGT
CTCAAAAAAACTTGCAGGTGTGCGTGTGTGTGTGTTTGTTTTGTTGGTGA
CGTAGACCGCTCTGTCCGGCTGACCAATGAAGAGATGGAAGTCGTGATGG
GCACGAACGATATGTGCGTGCGTGGAACGCGAAAGAGCGAGAAGAAGGGG
GAGAGACATGACAGGTTCTGTTTCTGCCGTCTCGTCGCTGTTGTTAGTTC
CATGCTGTAGCTCTGAGGTAACAAGGTGGTTGAATTCTCGGGGCACACCA
GAACCTCAAATAGTGTAATGGTCGCACTGCCAGACGTAACAACAGTATCT
AGGTCGAAGCCAATGAGCTTTGACGAAGATGTGTTTACGATAGACGTACA
GCGTGTGACCTCGGCTGGTGCACCCACATACCAAACGGTTTAGACTGGCG
CCCAGAATAGATGGATTGAAAACACAAACCACAAACACGTTACACCCAAC
GTACCTGGACTTGTGCGCAGACAGCACGGCACTGGCGCCATTGCGGTAGT
CGTACCTTCGGCTACTGAAGGCACAGGGCCACTACCGTCTGCATGTAGAC
AACGCTCCTCTGGGGCTGATATCGTTTGTCGCTCCCTGGTACCAGAACAT
GACATCCTGTACCATTTTATTTTGCTGCTGTGTCTTGACAACGGTAGCCA
TTTTCCCGGATATGAAAGAGCTACGTGCCGACGCCTCCACTTTCCTGTCT
TGTTTGGTGTCTGATGCTTGGAAATCAGTCGACCCCCTTTACCGACTGGA
GCACGAACAGACAGACAAACGACGAGCGGCATCACGCAAGACCGTGCTCA
CGCAGCTCACGGAATTGGCTGACGCACACGGGCAGGACGACTACTCTTCC
AACGCGCGACTACGCCAAGGGATGCGCGAACGGAAGAAACAGGAACGCGA
GAGAGAGGAAGAAGCAATGGTGAGACGACCCGACAATAGCGATCTTGATG
ATGACGGGGCGGCTAAAATACGCCTTCTGGAGGATGGAACATTCCAAACA
TCTCAAAAGTTGTACACTTCACAATGATGAAGAACCTCGAAACGCCCCGA
AACGCGCCCGTCTCTGTACGCAATAGCGCTAAAGGACTGACAGTCCCATA
CTGCTGTCCGCGGCAGATTCTGAATCATTGGCTTGTACCGATAGGTTCGA
AGTTTTCGTACGTTCCTGCGGAAAACTCACCTTACAGCCCCAGCTATCGC
AGTAGACACGTTTAAAACTCGATTCACAGTCAGGAGGAACATGTCCCAAC
CATTGTCGCTTCATCTGGCTTTCGGCGACGTTGGCCTGAGATATCAAACT
CACTCTACACGAAAAATGAGAATAAGTGCGTATCACGAAGAAAGTGGAAA
ACCTTTAGTCAAAACGACAACAAGAGAATCTCCATCCACTGTACCTCTTC
ATGCCCCTGTTCTGTGCTTAGGCCAAAGCAGTCCGTCCAAATCACTCGAT
TGCAGCGGGGGCACCCGATCGCCGTGTGTCGCACGGTAAAGTACCTGGTT
TGTGACCACGGTATGATACGTGCTTGGTTTATGAAGAACCGCCCTGAGCA
GTGAGAATTCACAACAGACACACACCAGCAACACCACGGAACAGGACATG
AGACACGCTGGCAACCTGACACACACACGTCACGACTTCAGGGGCGAGGA
TGAACACGAACGAGCTCGTTTGAAAGATGTATCGATGTAGCACAAGAGAA
AGAAGGGCGAACAAATATTATCGAAGGTTTCGCTTAGTCAACGAGGGTAA
CAATGAGCAAGCAAATTCGATTTCTGGGCCCGCCCCCGTTGCTGCTGCTG
TGTAAGGTCGTCATGATATTTGTGCACACTTTACACCGGCAGCACAGTGG
CACCTTTCATCTGTTCCTTGCACACCATTCTCGATAGAGCTCATCATGGC
GCCTGCCGACTCCGGCGCGTGTGCCGGGTGTGTGTGTGGTGTATAATTTG
ATACCTGGTACGTTTTATGTGTGTCTTGTACCTATATACGTGGTGGTGTG
AGAGAAGGTTTTTCGAATAGATCAGACCACGCGACGTCAATTACAATTTG
TTTGGGGCTATCATGGGAGCTCCAAACCCTTTTTGGTGGTCGTTAAGCAA
AATTCATTGAATTTCTGATTGATTTCCACTCTGATGTAAAACTCGATTCA
TGGCTTTTTTTGGTCGGTAGGGCCGATTCATATAAATCGTTGATTTATAT
ACTTCGTCTATATCTACGGTAGTCTTTTGAAACGATTCGATGTCCAAATA
TCACCCCGAGCGACCGCGATTGTCAACGCGCAAGTTCCGGCCAGTTAAAG
AAAATAGAAAATGCTTGTCATATAGACGTATCTTACCTGCCCAAACTCCG
GTCCTGGGCTGTTGCACTCCTTGGGCGTGCATGCCTGATTGCTGAAAGGC
TGAAATGAAAAAACCCGGCGGGAATCGATAGCGCCCACTCTTACAAACTT
CAGTTTCCCAAAATTAAATTAAAATAAAATCCATGCGGCCCACCCGAAGA
CAAAGGGTCGCCACTTGCACCGGTCTTCCACCTGTTGACTTGCGTTCAGC
CACATTACATAGCCTCTAGACCTCTTGACCTGTCAACACCCGGGGTCGAC
CGCACTTCCTCGCTCCACCATCCTTTGATTCGTGTCATTCAATCAAACGT
CACGGCGTTTTCACGGTGTACTCCAACGCCACTCCGAGAGGGCACGGATT
TATGTCGGTTTTCACAGGGTTTGCTGAACGCGACGCCGAATTTGCCGACT
TCTCCAGCATCACTAGCCCGCACAATGTCCGTCACGGCAGTATCCGCGCC
GTTCGCCCCTAATCACCCCCCCCCCCTTCTCCCCTAATCCCGTGCCCGGG
TTTCCTTTCGAATGCTTTGATGTCCCGCGCAGGCGAAAGGGCTCGGAATA
CGTCTTGCGACCCCGATCCCGGCCGATGCAGATGCTGCTCGCGGCGTCAA
GTACCGAAGCCGGTACAAGGGCTTCAGGACGGGAGAGAAGGCCAAGATGG
CTGCCATAACGGGCGAGTCGATCTTCGGATTGGACAGCGAATCCCCCGAG
CAAGCCCGGCTAAAAGCCGTGCTCGTGAAGGCCGCGAAGCTCGGTCTCAA
GACCAGAGGCATGCGCTTGTTGAAGCCCGGCGCGGGCGGTGGGGGGGGGG
GAAGAGCGACTCGGCAGCAGTCGCACGGTTCGTCCTCCAGTTGCGGCACA
GGTCGTACTCGACGGTTTTCTGCTGAGAAGCACGGCCAAGATTCGGATAG
AAGTACCCGACTGCGAAGGGGTGCCGGCGAGATAGCGACGCGTTCCGGAA
TGGAAGGAGAAGGACGAGGAGAACGAGTCGGGGCGGGTGTTGTCGGTGTT
GATGACCAACCGGTAAAGGAGATTGATGGGGGTGATGTAGAGCTTGCCGG
CGAGGGTGTGCGTCGTGGGTTGCTGCAGGCACGGGAGGCAGAAGTTTCTA
CCAACAAGGCGGACTCTCTCCTACGAAAAAAGCGGCGGAAACGTGGTTCG
CTGTCAAAACCCAGCTGGGCTGCTGCTGGTACTGCCTTCAACAATGGTGG
GCTTGCTGCAATCGCGAGCTTATATTGAAAATTTGACGTGTTTGTGTGCC
GGGAAGGTAGTATTTTTGACACATTGATTCTTATGTGTAACTATCTTACC
CGCAGTCCCACTGGGTACTTTAGTCAATCGTTGGTAAACTAAACGTTGGC
AGGAGCGACGGTCATTTCGCTGAGGCCCATGGACGTCGAGAAACCTCTCC
TTCCGCATGTGTGGGGGAAGGGTGTTTTTTTGTGAATTCTCCGGTGGAAA
AGCACGCGTTTCTGGATACGATGTACATTAATATGCTGTTGTTCTTTACA
CCTAGTGATGGTGCGGATTGTGTGAGTTGCGAATCTGCATAACCCACAGG
GTCAATCTCACTCTTTTCGACTTTTCTCAAAGAATAAGGTGACCGCCGTA
GGCGACGTCAACAATGAACCAGGGATTTCAACGAACCAGAAATTCAACTC
CAAAAACTGCCCAAGGAGAACACTGCGGGCGCCTCCTCTCGTTCTCTGTT
TTCTCTCTCTCTTTGTCTGCGAAGTAAGTACGGTCTCAGGGTAGGCGATA
TCATCGTCACCACCCATAAAGGCATGAGATTGTAGCTAATGAGGTGTGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig884:3246..8845-

>mRNA_P-littoralis_Contig884.1.1 ID=mRNA_P-littoralis_Contig884.1.1|Name=mRNA_P-littoralis_Contig884.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1305bp|location=Sequence derived from alignment at P-littoralis_Contig884:3246..8845- (Pylaiella littoralis U1_48)
ATGTCTACACTCGCGGCCGCCCGGGCCGACAACATGTATTATCCTCCGGA
GTGGAGGCCGGAGTACGGGGGCATCTCCAAGTTTCAGGGCTCGAACGGCC
ACAACCAGTACGAGAAGTACGGCAAGATTCGCTTCGAGCTTCCCGTCCAC
GGGTGGTGCCTGGGATGTGGGCGACACATCGGCAGAGGAACGCGATTCAA
TGCCACCAAGGACCAGGCGGGCACGTACTACAGCACCAAGATTTGGCAGT
TTTCCATGAAGTGCCCCTCTTGCAGCACGGTAATGATCATCAAGACCGAC
CCCAAGAATACGGATTATGAGTACGTCGAGGGCATCCGCAAGAAGGACAT
GGCCTTCGACCCCGAGGAGGCGGAGACCCAGCGCGTGCAGGACAGCGAGG
TCTCAAAAAAACTTGCAGTCGACCCCCTTTACCGACTGGAGCACGAACAG
ACAGACAAACGACGAGCGGCATCACGCAAGACCGTGCTCACGCAGCTCAC
GGAATTGGCTGACGCACACGGGCAGGACGACTACTCTTCCAACGCGCGAC
TACGCCAAGGGATGCGCGAACGGAAGAAACAGGAACGCGAGAGAGAGGAA
GAAGCAATGGCGAAAGGGCTCGGAATACGTCTTGCGACCCCGATCCCGGC
CGATGCAGATGCTGCTCGCGGCGTCAAGTACCGAAGCCGGTACAAGGGCT
TCAGGACGGGAGAGAAGGCCAAGATGGCTGCCATAACGGGCGAGTCGATC
TTCGGATTGGACAGCGAATCCCCCGAGCAAGCCCGGCTAAAAGCCGTGCT
CGTGAAGGCCGCGAAGCTCGGTCTCAAGACCAGAGGCATGCGCTTGTTGA
AGCCCGGCGCGGGCGGTGGGGGGGGGGGAAGAGCGACTCGGCAGCAGTCG
CACGGTTCGTCCTCCAGTTGCGGCACAGGTCGTACTCGACGGTTTTCTGC
TGAGAAGCACGGCCAAGATTCGGATAGAAGTACCCGACTGCGAAGGGGTG
CCGGCGAGATAGCGACGCGTTCCGGAATGGAAGGAGAAGGACGAGGAGAA
CGAGTCGGGGCGGGTGTTGTCGGTGTTGATGACCAACCGGTAAAGGAGAT
TGATGGGGGTGATGTAGAGCTTGCCGGCGAGGGTGTGCGTCGTGGGTTGC
TGCAGGCACGGGAGGCAGAAGTTTCTACCAACAAGGCGGACTCTCTCCTA
CGAAAAAAGCGGCGGAAACGTGGTTCGCTGTCAAAACCCAGCTGGGCTGC
TGCTGGTACTGCCTTCAACAATGGTGGGCTTGCTGCAATCGCGAGCTTAT
ATTGA
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