mRNA_P-littoralis_Contig1205.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1205.8.1
Unique NamemRNA_P-littoralis_Contig1205.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1205.8.1 vs. uniprot
Match: A0A2G8S714_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8S714_9APHY)

HSP 1 Score: 61.6 bits (148), Expect = 1.790e-7
Identity = 55/200 (27.50%), Postives = 85/200 (42.50%), Query Frame = 1
Query:   79 MCYNCRGIGHFARDCTVKIC-KRCQGRGHDEDKCGSPADMRTNLAVELPDCDSG----SAVGLEPWHV----DSGASGTVTRSSRMMTNFRPCN--KLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCVRQGYKFETDDPGMLVTEKSTGEQLLMRP-DNDLYVSYGRRVDGEVEAACA 642
            +CYNCRG+GH AR+C  K   K  Q      D   +PA    N A E      G    SA+   P       DSGAS  ++        FR  N  + +   +       G GD+ + + +   + L+ +++  Y P+ A+ L+S+ +    GY    +     + E+S+   +   P  N LY    R V  EV +A A
Sbjct:  558 ICYNCRGVGHIARNCRQKGGGKEGQWPKPKTDDAANPAKADANAATEKGFLALGNVVTSALAAVPGTYIDVFDSGASVHISPYRECFVKFRELNPARAITAANGEQFFATGEGDVEIRVPNGPSTQLLTLRDVLYSPSVAFALVSIKRVDEGGYTTIFEHGECHIVERSSELDIARIPLTNGLYQIVSRYV--EVPSATA 755          
BLAST of mRNA_P-littoralis_Contig1205.8.1 vs. uniprot
Match: A0A5N6L843_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6L843_9ASTR)

HSP 1 Score: 59.7 bits (143), Expect = 7.820e-7
Identity = 43/177 (24.29%), Postives = 84/177 (47.46%), Query Frame = 1
Query:   79 MCYNCRGIGHFARDCTVKICKRCQGRGHDEDKCGSPADMRTNLAVELP-DCDSGSAVGLEPWHVDSGASGTVTRSSRMMTNF--RPCNKLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCVRQGYKFETDDPGMLVTEKSTGE--QLLMRPDNDLY 594
             CYNC   GH   DC  +   +   +  ++D+     + R  +A+    +C+       + W +DSG S  +T    + T     P + +  G +  + Q++ +G I +++++    +L  V+   + P   YNLLS+ Q ++ GY+   D+    +T K TG+   ++ R  N+L+
Sbjct:  343 QCYNCNQFGHIKADCWNEPQAQAAVQDEEDDE-----EYRLFMAIGCEKNCEQ------DVWFLDSGCSNHMTPKRDIFTCMYNTPKHHVKLG-NGKSIQVENKGKIKLEVEAGKYRVLDDVQ---FAPELGYNLLSVGQLMKAGYRLSFDEDKCTITHKQTGDIMSVIWRSSNNLF 504          
BLAST of mRNA_P-littoralis_Contig1205.8.1 vs. uniprot
Match: A0A834R2W3_SARSC (Copia protein n=1 Tax=Sarcoptes scabiei TaxID=52283 RepID=A0A834R2W3_SARSC)

HSP 1 Score: 58.5 bits (140), Expect = 1.750e-6
Identity = 43/148 (29.05%), Postives = 66/148 (44.59%), Query Frame = 1
Query:   76 PMCYNCRGIGHFARDCTVKICKRCQGRGHDEDKCGSPADMRTNLAVELPDCDSGSAVGLEPWHVDSGASGTVTRSSRMMTNFRPC-NKLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCVRQGYKFE 516
            P+C+NC+ IGH A+DC   +  R   + + +      +D   N+A          ++    W +DSGA    T + +++ N R   N  V  P      I   G   VDL++D     M+V    +VP F  N LS SQ  + G+  E
Sbjct:  206 PICFNCKEIGHLAKDCKSDLSYRILNKSNSQQY----SDRVVNIASN--------SILANRWILDSGADSHFTGNWKILRNIRQVRNVFVRVPLGPPRAITHEG--LVDLRNDHSCFTMSVY---FVPGFQSNCLSQSQLRKDGFDLE 336          
BLAST of mRNA_P-littoralis_Contig1205.8.1 vs. uniprot
Match: T1J0W8_STRMM (Uncharacterized protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1J0W8_STRMM)

HSP 1 Score: 58.5 bits (140), Expect = 1.840e-6
Identity = 43/160 (26.88%), Postives = 68/160 (42.50%), Query Frame = 1
Query:   79 MCYNCRGIGHFARDCTVKICKRCQGRGHDE-----DKCGSPADMRTNLAVELPDCDSGSAVGL------EPWHVDSGASGTVTRSSRMMTNFRPCNKLVAGPDNVTHQIKGRGDIAVDLKSDVGSML--MAVKNAAYVPTFAYNLLSMSQCVRQGYKFET 519
             C+NC G+GHFA+DC     KR     ++      DK  S    +       P  DS   V L      + +++DS  +  V  +  +  NF+    +          I+G GDI + +  D+  +   + +KN  Y P F  NL+S S+C +  Y   T
Sbjct:  263 QCFNCSGLGHFAKDCPSPRKKRDNRNANNSVVKNSDKVLSVKSGKRGAFYAHPIFDSHDTVALSSVLSNDTFYLDSACTNHVCSNKSLFVNFKSIKPVPLELGEGYSSIEGIGDIEL-ITYDLDGIQNEVTLKNVCYAPKFKRNLISESKCDKASYDVHT 421          
BLAST of mRNA_P-littoralis_Contig1205.8.1 vs. uniprot
Match: A0A834RG90_SARSC (Uncharacterized protein n=1 Tax=Sarcoptes scabiei TaxID=52283 RepID=A0A834RG90_SARSC)

HSP 1 Score: 58.5 bits (140), Expect = 1.910e-6
Identity = 43/148 (29.05%), Postives = 66/148 (44.59%), Query Frame = 1
Query:   76 PMCYNCRGIGHFARDCTVKICKRCQGRGHDEDKCGSPADMRTNLAVELPDCDSGSAVGLEPWHVDSGASGTVTRSSRMMTNFRPC-NKLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCVRQGYKFE 516
            P+C+NC+ IGH A+DC   +  R   + + +      +D   N+A          ++    W +DSGA    T + +++ N R   N  V  P      I   G   VDL++D     M+V    +VP F  N LS SQ  + G+  E
Sbjct:  206 PICFNCKEIGHLAKDCKSDLSYRILNKSNSQQY----SDRVVNIASN--------SILANRWILDSGADSHFTGNWKILRNIRQVRNVFVRVPLGPPRAITHEG--LVDLRNDHSCFTMSVY---FVPGFQSNCLSQSQLRKDGFDLE 336          
BLAST of mRNA_P-littoralis_Contig1205.8.1 vs. uniprot
Match: A0A6D2KMT4_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KMT4_9BRAS)

HSP 1 Score: 58.2 bits (139), Expect = 2.430e-6
Identity = 40/146 (27.40%), Postives = 68/146 (46.58%), Query Frame = 1
Query:   82 CYNCRGIGHFARDCTVKI--CKRCQGRGHDEDKCGSPADMRTNLAVELPDCDSGSAVGL-EPWHVDSGASGTVTRSSRMMTNFRPCN--KLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCVRQG 504
            CY C  +GHF +DC VK+      + + H ED+     D      VE     + +   L   W VDSG S  +T + ++ ++ +  +  + +   DN  H+++  G I ++   + G  +  +KN  +VP    NLLS+   V  G
Sbjct:  248 CYRCGKLGHFKKDCRVKLKETNMAESKSHTEDE-----DWGKCFTVEAASSGTSTTKNLGNDWIVDSGCSHHITGNEKLFSSLQRHDGKEAIITADNSIHRVEKEGTIVIE--GEEGGPI-TLKNVYHVPGVKKNLLSVVNAVDSG 385          
BLAST of mRNA_P-littoralis_Contig1205.8.1 vs. uniprot
Match: A0A6D2KKQ4_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KKQ4_9BRAS)

HSP 1 Score: 58.2 bits (139), Expect = 2.440e-6
Identity = 40/146 (27.40%), Postives = 68/146 (46.58%), Query Frame = 1
Query:   82 CYNCRGIGHFARDCTVKI--CKRCQGRGHDEDKCGSPADMRTNLAVELPDCDSGSAVGL-EPWHVDSGASGTVTRSSRMMTNFRPCN--KLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCVRQG 504
            CY C  +GHF +DC VK+      + + H ED+     D      VE     + +   L   W VDSG S  +T + ++ ++ +  +  + +   DN  H+++  G I ++   + G  +  +KN  +VP    NLLS+   V  G
Sbjct:  248 CYRCGKLGHFKKDCRVKLKETNMAESKSHTEDE-----DWGKCFTVEAASSGTSTTKNLGNDWIVDSGCSHHITGNEKLFSSLQRHDGKEAIITADNSIHRVEKEGTIVIE--GEEGGPI-TLKNVYHVPGVKKNLLSVVNAVDSG 385          
BLAST of mRNA_P-littoralis_Contig1205.8.1 vs. uniprot
Match: A0A6D2KB33_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KB33_9BRAS)

HSP 1 Score: 58.2 bits (139), Expect = 2.590e-6
Identity = 40/146 (27.40%), Postives = 68/146 (46.58%), Query Frame = 1
Query:   82 CYNCRGIGHFARDCTVKI--CKRCQGRGHDEDKCGSPADMRTNLAVELPDCDSGSAVGL-EPWHVDSGASGTVTRSSRMMTNFRPCN--KLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCVRQG 504
            CY C  +GHF +DC VK+      + + H ED+     D      VE     + +   L   W VDSG S  +T + ++ ++ +  +  + +   DN  H+++  G I ++   + G  +  +KN  +VP    NLLS+   V  G
Sbjct:  248 CYRCGKLGHFKKDCRVKLKETNMAESKSHTEDE-----DWGKCFTVEAASSGTSTTKNLGNDWIVDSGCSHHITGNEKLFSSLQRHDGKEAIITADNSIHRVEKEGTIVIE--GEEGGPI-TLKNVYHVPGVKKNLLSVVNAVDSG 385          
BLAST of mRNA_P-littoralis_Contig1205.8.1 vs. uniprot
Match: A0A6D2JWG0_9BRAS (Uncharacterized protein n=10 Tax=Coluteocarpeae TaxID=1394505 RepID=A0A6D2JWG0_9BRAS)

HSP 1 Score: 58.2 bits (139), Expect = 2.660e-6
Identity = 40/146 (27.40%), Postives = 68/146 (46.58%), Query Frame = 1
Query:   82 CYNCRGIGHFARDCTVKI--CKRCQGRGHDEDKCGSPADMRTNLAVELPDCDSGSAVGL-EPWHVDSGASGTVTRSSRMMTNFRPCN--KLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCVRQG 504
            CY C  +GHF +DC VK+      + + H ED+     D      VE     + +   L   W VDSG S  +T + ++ ++ +  +  + +   DN  H+++  G I ++   + G  +  +KN  +VP    NLLS+   V  G
Sbjct:  248 CYRCGKLGHFKKDCRVKLKETNMAESKSHTEDE-----DWGKCFTVEAASSGTSTTKNLGNDWIVDSGCSHHITGNEKLFSSLQRHDGKEAIITADNSIHRVEKEGTIVIE--GEEGGPI-TLKNVYHVPGVKKNLLSVVNAVDSG 385          
BLAST of mRNA_P-littoralis_Contig1205.8.1 vs. uniprot
Match: A0A6D2KB39_9BRAS (ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KB39_9BRAS)

HSP 1 Score: 58.2 bits (139), Expect = 2.750e-6
Identity = 40/146 (27.40%), Postives = 68/146 (46.58%), Query Frame = 1
Query:   82 CYNCRGIGHFARDCTVKI--CKRCQGRGHDEDKCGSPADMRTNLAVELPDCDSGSAVGL-EPWHVDSGASGTVTRSSRMMTNFRPCN--KLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCVRQG 504
            CY C  +GHF +DC VK+      + + H ED+     D      VE     + +   L   W VDSG S  +T + ++ ++ +  +  + +   DN  H+++  G I ++   + G  +  +KN  +VP    NLLS+   V  G
Sbjct:  522 CYRCGKLGHFKKDCRVKLKETNMAESKSHTEDE-----DWGKCFTVEAASSGTSTTKNLGNDWIVDSGCSHHITGNEKLFSSLQRHDGKEAIITADNSIHRVEKEGTIVIE--GEEGGPI-TLKNVYHVPGVKKNLLSVVNAVDSG 659          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1205.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A2G8S714_9APHY1.790e-727.50Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
A0A5N6L843_9ASTR7.820e-724.29Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A834R2W3_SARSC1.750e-629.05Copia protein n=1 Tax=Sarcoptes scabiei TaxID=5228... [more]
T1J0W8_STRMM1.840e-626.88Uncharacterized protein n=1 Tax=Strigamia maritima... [more]
A0A834RG90_SARSC1.910e-629.05Uncharacterized protein n=1 Tax=Sarcoptes scabiei ... [more]
A0A6D2KMT4_9BRAS2.430e-627.40Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A6D2KKQ4_9BRAS2.440e-627.40Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A6D2KB33_9BRAS2.590e-627.40Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A6D2JWG0_9BRAS2.660e-627.40Uncharacterized protein n=10 Tax=Coluteocarpeae Ta... [more]
A0A6D2KB39_9BRAS2.750e-627.40ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1205contigP-littoralis_Contig1205:35508..36275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog90675.XP_010456968.1
PFAMsRetrotran_gag_2
Model size642
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.71e-08
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37V5K@33090|Viridiplantae,3GWGZ@35493|Streptophyta,3HYZ5@3699|Brassicales
Descriptiongag-polypeptide of LTR copia-type
Cds size642
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789517.0904229-CDS-P-littoralis_Contig1205:35507..357471680789517.0904229-CDS-P-littoralis_Contig1205:35507..35747Pylaiella littoralis U1_48CDSP-littoralis_Contig1205 35508..35747 +
1680789517.1048822-CDS-P-littoralis_Contig1205:35873..362751680789517.1048822-CDS-P-littoralis_Contig1205:35873..36275Pylaiella littoralis U1_48CDSP-littoralis_Contig1205 35874..36275 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1205.8.1prot_P-littoralis_Contig1205.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1205 35508..36275 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1205.8.1

>prot_P-littoralis_Contig1205.8.1 ID=prot_P-littoralis_Contig1205.8.1|Name=mRNA_P-littoralis_Contig1205.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=214bp
RGNNRKKKSSDGKDGAEDDKPSAKGPMCYNCRGIGHFARDCTVKICKRCQ
GRGHDEDKCGSPADMRTNLAVELPDCDSGSAVGLEPWHVDSGASGTVTRS
SRMMTNFRPCNKLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAY
VPTFAYNLLSMSQCVRQGYKFETDDPGMLVTEKSTGEQLLMRPDNDLYVS
YGRRVDGEVEAACA
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mRNA from alignment at P-littoralis_Contig1205:35508..36275+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1205.8.1 ID=mRNA_P-littoralis_Contig1205.8.1|Name=mRNA_P-littoralis_Contig1205.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=768bp|location=Sequence derived from alignment at P-littoralis_Contig1205:35508..36275+ (Pylaiella littoralis U1_48)
CGAGGCAACAACAGGAAGAAGAAGTCCAGCGACGGAAAAGACGGCGCTGA GGACGACAAGCCATCGGCCAAGGGGCCGATGTGTTACAACTGCCGTGGCA TAGGCCATTTCGCCCGCGACTGCACTGTGAAGATCTGCAAGCGATGCCAA GGAAGAGGGCACGACGAAGACAAGTGCGGGTCTCCGGCTGATATGCGGAC AAACCTGGCGGTGGAGCTGCCGGACTGCGACTCTGGATCGGTGACTTCGA GCGTAGAGGCCGCAGGGTTCATAGCAAAGGAGCTGGACCTAGCCGGGTGT GTGCATCTACAAGGCAAGTGCGATGATGGTGGTCCAATCGGTGGTGTAGG GGATTTCGCACTGCAGGCTGTTGGTTTAGAACCCTGGCACGTTGACTCCG GGGCTTCAGGCACCGTGACGCGTAGCTCCAGGATGATGACCAACTTCCGA CCGTGCAACAAGCTAGTTGCAGGTCCAGACAATGTCACTCACCAGATTAA AGGCAGAGGTGACATAGCCGTCGACCTCAAGTCTGATGTGGGGTCAATGC TTATGGCCGTCAAAAACGCAGCCTACGTGCCCACGTTTGCCTACAATCTG CTCTCCATGTCCCAGTGCGTGCGACAAGGATACAAATTCGAAACCGATGA CCCCGGTATGCTCGTCACTGAAAAGTCGACCGGGGAACAACTACTGATGC GCCCCGACAATGACTTATATGTCTCATACGGCCGCAGAGTTGATGGTGAG GTAGAAGCAGCCTGCGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1205:35508..36275+

>mRNA_P-littoralis_Contig1205.8.1 ID=mRNA_P-littoralis_Contig1205.8.1|Name=mRNA_P-littoralis_Contig1205.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=642bp|location=Sequence derived from alignment at P-littoralis_Contig1205:35508..36275+ (Pylaiella littoralis U1_48)
CGAGGCAACAACAGGAAGAAGAAGTCCAGCGACGGAAAAGACGGCGCTGA
GGACGACAAGCCATCGGCCAAGGGGCCGATGTGTTACAACTGCCGTGGCA
TAGGCCATTTCGCCCGCGACTGCACTGTGAAGATCTGCAAGCGATGCCAA
GGAAGAGGGCACGACGAAGACAAGTGCGGGTCTCCGGCTGATATGCGGAC
AAACCTGGCGGTGGAGCTGCCGGACTGCGACTCTGGATCGGCTGTTGGTT
TAGAACCCTGGCACGTTGACTCCGGGGCTTCAGGCACCGTGACGCGTAGC
TCCAGGATGATGACCAACTTCCGACCGTGCAACAAGCTAGTTGCAGGTCC
AGACAATGTCACTCACCAGATTAAAGGCAGAGGTGACATAGCCGTCGACC
TCAAGTCTGATGTGGGGTCAATGCTTATGGCCGTCAAAAACGCAGCCTAC
GTGCCCACGTTTGCCTACAATCTGCTCTCCATGTCCCAGTGCGTGCGACA
AGGATACAAATTCGAAACCGATGACCCCGGTATGCTCGTCACTGAAAAGT
CGACCGGGGAACAACTACTGATGCGCCCCGACAATGACTTATATGTCTCA
TACGGCCGCAGAGTTGATGGTGAGGTAGAAGCAGCCTGCGCC
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