mRNA_P-littoralis_Contig883.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig883.11.1
Unique NamemRNA_P-littoralis_Contig883.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig883.11.1 vs. uniprot
Match: A0A6H5K566_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K566_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 6.740e-8
Identity = 27/45 (60.00%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:  130 SGAYTLVGCAEDDQGARVMEYGPIPEATMSAEICEGICYAQDPTY 264
            SG Y  V C  D Q +RVM  GP+ EA MSAEIC GIC AQD +Y
Sbjct:  468 SGDYDFVDCVADSQSSRVMPVGPLAEAVMSAEICFGICSAQDDSY 512
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BLAST of mRNA_P-littoralis_Contig883.11.1 vs. uniprot
Match: D7FL81_ECTSI (WSC domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL81_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 1.420e-7
Identity = 26/42 (61.90%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:  130 SGAYTLVGCAEDDQGARVMEYGPIPEATMSAEICEGICYAQD 255
            SG Y  VGC  D Q +RVM  GP+ E  MSAEIC GIC AQD
Sbjct:   49 SGDYDFVGCVADSQSSRVMPVGPLAEDVMSAEICFGICSAQD 90
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BLAST of mRNA_P-littoralis_Contig883.11.1 vs. uniprot
Match: A0A6H5K6V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6V8_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 3.380e-5
Identity = 23/40 (57.50%), Postives = 26/40 (65.00%), Query Frame = 1 
Query:  145 LVGCAEDDQGARVMEYGPIPEATMSAEICEGICYAQDPTY 264
            L+GC  D Q  RVM  GP+  ATMSAEIC GIC   D +Y
Sbjct:  353 LIGCVADSQDDRVMSEGPMSAATMSAEICLGICSEMDSSY 392
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig883.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K566_9PHAE6.740e-860.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL81_ECTSI1.420e-761.90WSC domain containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K6V8_9PHAE3.380e-557.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig883contigP-littoralis_Contig883:87818..90569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size267
Hectar predicted targeting categorysignal peptide
Exons4
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791771.4317782-CDS-P-littoralis_Contig883:87819..878581680791771.4317782-CDS-P-littoralis_Contig883:87819..87858Pylaiella littoralis U1_48CDSP-littoralis_Contig883 87820..87858 -
1680791771.44411-CDS-P-littoralis_Contig883:88242..882871680791771.44411-CDS-P-littoralis_Contig883:88242..88287Pylaiella littoralis U1_48CDSP-littoralis_Contig883 88243..88287 -
1680791771.4557467-CDS-P-littoralis_Contig883:88684..888221680791771.4557467-CDS-P-littoralis_Contig883:88684..88822Pylaiella littoralis U1_48CDSP-littoralis_Contig883 88685..88822 -
1680791771.472544-CDS-P-littoralis_Contig883:90527..905691680791771.472544-CDS-P-littoralis_Contig883:90527..90569Pylaiella littoralis U1_48CDSP-littoralis_Contig883 90528..90569 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig883.11.1prot_P-littoralis_Contig883.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig883 87820..90569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig883.11.1

>prot_P-littoralis_Contig883.11.1 ID=prot_P-littoralis_Contig883.11.1|Name=mRNA_P-littoralis_Contig883.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=88bp
PRFSRTSKLPALQNTKQSKANMRASTALKLLPACCGFFLLTPASGAYTLV
GCAEDDQGARVMEYGPIPEATMSAEICEGICYAQDPTY
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mRNA from alignment at P-littoralis_Contig883:87818..90569-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig883.11.1 ID=mRNA_P-littoralis_Contig883.11.1|Name=mRNA_P-littoralis_Contig883.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2752bp|location=Sequence derived from alignment at P-littoralis_Contig883:87818..90569- (Pylaiella littoralis U1_48)
CCGCGTTTCAGCAGGACATCCAAGCTTCCGGCGCTGCAGAACGTGAGTCG
GGGAGGTGGGAAAGGGAAAGGCGGGTATGCCTGTGCTGTTTGAAGTTACT
GCATACGAGTCACATGGTTACCCCGTGTTGTGTTCGTGCGAGTGGAGTGC
GAGCGGCAAAGATACATCCAGATGATCGCAGAAAATCCCTTTGTGGGACC
TTTCGCCGATCGAGTAGACGGCCACCTGTCTGTGCGGTGTTTATGGGCGT
TTTGGTCGGTCTTGAAGTTTCGGAGTTTCGGCATCCCATATGTATATGTT
CGTTCAATTGTGCGGGTGAACGTAGTACTGCAAGCGGCGCTGCAGGTAAA
CATGTCAGTTATAGACCTATGTGTAGAGAGGCACGACGTGCGTCGTCGTC
TAGGCTACTATAATATTGCTGGGAGAGAAAGGAATGTCCTCATTTCTGCC
ATCTTGCCAACATCGGAACGACCTCCCTCCAACAACCGAATCCTCTCTCC
TTGATAATCTATACTACGTACACGCCAGAGAGAAAGAGAGAGGTGCCCAG
AGAGAGAGAAAATGGGCAGTATACCACATACATAACTCGTGCTACGCACA
GGCGGCCAATATGCCACAGCACACATTCCTTACCTTGTTACCGCTCACTC
ACATGTTGTAATTATTGAGATTAGACTAGACCAGCTGGTATGTGGGCAGG
TTGGTTCTATGTACGTATAGCGTCGATGTTGGCTAAACCTACTGCTTTGC
TCTGCACCAAACGAGCAACTCCTGCGCATTTGGCATAAAAGGGTACAACA
CCCCTGCCTTTTAATATTTACTCCGGAGTAGTTTTATGTTTGCAGCATTT
GGTTGTTTGGTGCGATTGGTCTTGTTTGTTTTTTAGTTTTCGTATTTTTT
CACCGAAAAAAGGTAAATGGATTTTCTTTTTCACCCAAAATGGTCTTCCC
CCTGAAAGTCAACGTTGCACAGGGATGGGTGTGGTACAACTGCTCGCCGG
TTGTACCCGTGCTCGAACAAATCAACATACGTTTCTATTGTTGGGATCAG
GTTGGATCACTCTCCCAACCAGCCTCCCCAACCTAGGGAGGTTGGGAAGG
CCTCCCAACCTTCCCCAACCTTGCACTTTGGCCACCTGTGTATTCGGCTC
TCTTCTTCAAGGTCCATGCATACACCAGGACACCAGACAGTAGCACACGC
CACGTTCATCCATGCATGCATCGCATCGCATGTGTTTCGAATCCCCCTGC
GGTTGTTTTTTCGCCCGCGTGCCACACCTCTGACGTTAATTGAATTTTCG
GACTCATCGTACAGCTAATTCATACAAACAGTTTACGGTAGATGCCCGTT
TACCGTGCAGTCGACGGAACATTTTCCGAGAACTTGTTTTGCGGTTCGTG
ATTATCTTCGTTGGTTCGATCTGCTGTTCTGGTACACTGTAGCAAGGAGT
GTGGGACCGCGCTGGCCCATGTTTTTTGTCATGTTATTTCATTTCGGTAC
CTGATGAACAAACTGCCGCATAATATGTATCCCACACGTTACACCTCCTC
CCCCCTGCCGACCGTTTTTTCACCACCAGCTTCACTTTTTAAGCGAAGTC
GAGCGGCAGTCAGACATAGAGCCCATTTTCTCATTTTGTTTCTGCATGTA
AGTAGTAACTCTCAAGAACAATAACAACAAAAAACGACAAATAACTGATA
TTTTGTGCTGTCGCGTGCTGGTCCGTTGATTTGTGTCGTTTGTACAGACG
AAACAAAGCAAAGCAAACATGCGGGCCTCTACTGCGCTCAAGCTTCTGCC
GGCGTGCTGCGGCTTCTTCCTGCTCACGCCTGCCAGTGGAGCCTACACCT
TGGTTGGCTGCGCCGAGGATGACCAAGGCGCGAGGGTGAGAAGGGGCCCT
GTTCCGTCATGATATTTCCTCCACTAAAACCAGAGCTCGCTATAACGTTG
GCTTTGGTAGACGTTCAATATTCAAAATGCTGTGGATAACGGTGGCCACT
TGTTATGCCGACAACGCAGTTAGTTGCAATAATACTGCCTGTGGCTTGAA
TGTGGGAAAATGAGACCTCGAAGAGTTGCAGCATGCCCACCAAAAGAATC
GACCGCTGTTATCTGCACTATTATTCGCTGCTGATTTTGCCTCTTCTGCA
CAGCAGTGCTCTCATTTCGGGGAAGCTTTAGATTACATGATTCACCCACT
AAAACGAAATAATATTCACTCTTATTTTACTGCCGCTGTCCACTCTTGTC
GTCGTGTGCCCTGTTTGGTGTTTCGTGCACAGGTTATGGAGTACGGCCCC
ATTCCGGAGGCTACCATGTCTGCAGAGGTGGGCGACGTTGCGCTATACTG
GGGCGGGGGTCTTTTATCGCGGCGTCTCATTTATTGTGGTCGTATTTATG
TTGGCGATATTCCCTTCTGGTACTACCGGCCTGATTGTTGTTTTTGACGA
GTTTCGTCTTCTCTGTCCTTGAGTATTAACATCATATTTTGTTAACAATA
CCTACAGTAGTACATCATATTTGAAAAATTCTCACAGTATAGTACATCGT
ATTTGAAACATTCTCACAGTATACTTGCGTAAAAACTATGTTTTAGGTTG
TCATCGGATCATACTTCGAAGTGTATCCCTATCATCATTCCGTTCTTGGC
ATTCTGCTGCTTCCGTTCTCATCGAACGATTTCCTGTGCCCTCCCTTGTG
CCGCTGCACAGATTTGCGAAGGAATCTGCTATGCCCAGGACCCCACGTAC
AC
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Coding sequence (CDS) from alignment at P-littoralis_Contig883:87818..90569-

>mRNA_P-littoralis_Contig883.11.1 ID=mRNA_P-littoralis_Contig883.11.1|Name=mRNA_P-littoralis_Contig883.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=264bp|location=Sequence derived from alignment at P-littoralis_Contig883:87818..90569- (Pylaiella littoralis U1_48)
CCGCGTTTCAGCAGGACATCCAAGCTTCCGGCGCTGCAGAACACGAAACA
AAGCAAAGCAAACATGCGGGCCTCTACTGCGCTCAAGCTTCTGCCGGCGT
GCTGCGGCTTCTTCCTGCTCACGCCTGCCAGTGGAGCCTACACCTTGGTT
GGCTGCGCCGAGGATGACCAAGGCGCGAGGGTTATGGAGTACGGCCCCAT
TCCGGAGGCTACCATGTCTGCAGAGATTTGCGAAGGAATCTGCTATGCCC
AGGACCCCACGTAC
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