mRNA_P-littoralis_Contig883.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig883.7.1
Unique NamemRNA_P-littoralis_Contig883.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig883.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig883contigP-littoralis_Contig883:52845..53885 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1041
Hectar predicted targeting categoryother localisation
Exons1
Cds size768
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791771.0788643-CDS-P-littoralis_Contig883:52844..536121680791771.0788643-CDS-P-littoralis_Contig883:52844..53612Pylaiella littoralis U1_48CDSP-littoralis_Contig883 52845..53612 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791771.0978205-UTR-P-littoralis_Contig883:53612..538851680791771.0978205-UTR-P-littoralis_Contig883:53612..53885Pylaiella littoralis U1_48UTRP-littoralis_Contig883 53613..53885 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig883.7.1prot_P-littoralis_Contig883.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig883 52845..53612 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig883.7.1

>prot_P-littoralis_Contig883.7.1 ID=prot_P-littoralis_Contig883.7.1|Name=mRNA_P-littoralis_Contig883.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=256bp
MPGDWQRECEETDNARGLAEGESERARGTAEGDGGQIDNASGLAAGERER
ARGPVESVYTYPAVQQQQQQQQQQGHQFYRDGQGGGWNGGGTAHGQWLWE
PHGGGFGKQQQEEMLHQPFLSPQQQQHHHQPQHLVSDVREAANRAGLQKN
WQRIDDIREKVERPQEQMIADLTTQRDAEKSARLAAERKITELEAAAAVV
RIQQDAARFKAAAAATAATVRTQQDAARFQAEADEAARLEVGVPEAATAV
ETRGDG
back to top

mRNA from alignment at P-littoralis_Contig883:52845..53885-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig883.7.1 ID=mRNA_P-littoralis_Contig883.7.1|Name=mRNA_P-littoralis_Contig883.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1041bp|location=Sequence derived from alignment at P-littoralis_Contig883:52845..53885- (Pylaiella littoralis U1_48)
TCTTCACGTGTGTGTGTGGTTAATATATATGGTTCGGTGGACATCACGGT
GTGTGGGTTAACGACGTACCTTCATACACCGCTTTAGGATCTCAAACACG
ATTATCGTCTTTGGAGCTGCAGCTCCGCGGTGACACTGCGATGTCGGAAC
CAACGTCGAAGTAGGTTTTATAATGCCAGGGGATTGGCAGAGAGAGTGTG
AGGGAAGTGAAACTACAGGCTGTCGGACGGGCTGGAATTGCCGAGGGTGC
AGCAGCTGGTGGTGGGTTGTATAATGCCAGGGGATTGGCAGAGAGAGTGT
GAGGAAACTGATAATGCCAGGGGATTGGCAGAGGGGGAGAGTGAAAGGGC
AAGAGGTACTGCCGAGGGTGATGGTGGTCAAATTGATAATGCCAGTGGAT
TGGCAGCGGGTGAGAGAGAACGGGCGAGAGGGCCCGTAGAGAGTGTGTAT
ACGTACCCTGCTGTACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGGACA
TCAGTTTTATAGGGATGGACAGGGAGGAGGATGGAACGGTGGAGGGACCG
CGCATGGTCAATGGCTTTGGGAGCCCCACGGTGGGGGGTTTGGGAAGCAG
CAGCAAGAAGAGATGCTTCACCAGCCTTTCCTCAGCCCCCAACAGCAGCA
GCATCATCATCAGCCGCAGCATCTGGTGAGTGACGTGAGAGAGGCAGCTA
ATCGTGCAGGATTGCAGAAGAACTGGCAACGGATTGATGACATCCGCGAG
AAGGTAGAGAGGCCCCAGGAGCAGATGATCGCAGATCTCACCACTCAACG
TGATGCTGAAAAGTCAGCTAGGCTGGCTGCTGAGAGAAAGATAACAGAGT
TAGAAGCAGCAGCAGCAGTAGTGCGAATACAGCAGGATGCGGCGCGATTC
AAGGCTGCTGCAGCAGCAACAGCAGCAACAGTACGAACACAGCAGGATGC
GGCGCGATTCCAGGCTGAGGCTGACGAAGCGGCGAGATTAGAGGTCGGCG
TCCCGGAAGCAGCGACAGCAGTAGAAACACGAGGCGATGGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig883:52845..53885-

>mRNA_P-littoralis_Contig883.7.1 ID=mRNA_P-littoralis_Contig883.7.1|Name=mRNA_P-littoralis_Contig883.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=768bp|location=Sequence derived from alignment at P-littoralis_Contig883:52845..53885- (Pylaiella littoralis U1_48)
ATGCCAGGGGATTGGCAGAGAGAGTGTGAGGAAACTGATAATGCCAGGGG
ATTGGCAGAGGGGGAGAGTGAAAGGGCAAGAGGTACTGCCGAGGGTGATG
GTGGTCAAATTGATAATGCCAGTGGATTGGCAGCGGGTGAGAGAGAACGG
GCGAGAGGGCCCGTAGAGAGTGTGTATACGTACCCTGCTGTACAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGGGACATCAGTTTTATAGGGATGGACAGG
GAGGAGGATGGAACGGTGGAGGGACCGCGCATGGTCAATGGCTTTGGGAG
CCCCACGGTGGGGGGTTTGGGAAGCAGCAGCAAGAAGAGATGCTTCACCA
GCCTTTCCTCAGCCCCCAACAGCAGCAGCATCATCATCAGCCGCAGCATC
TGGTGAGTGACGTGAGAGAGGCAGCTAATCGTGCAGGATTGCAGAAGAAC
TGGCAACGGATTGATGACATCCGCGAGAAGGTAGAGAGGCCCCAGGAGCA
GATGATCGCAGATCTCACCACTCAACGTGATGCTGAAAAGTCAGCTAGGC
TGGCTGCTGAGAGAAAGATAACAGAGTTAGAAGCAGCAGCAGCAGTAGTG
CGAATACAGCAGGATGCGGCGCGATTCAAGGCTGCTGCAGCAGCAACAGC
AGCAACAGTACGAACACAGCAGGATGCGGCGCGATTCCAGGCTGAGGCTG
ACGAAGCGGCGAGATTAGAGGTCGGCGTCCCGGAAGCAGCGACAGCAGTA
GAAACACGAGGCGATGGG
back to top