mRNA_P-littoralis_Contig882.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig882.18.1
Unique NamemRNA_P-littoralis_Contig882.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig882.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig882contigP-littoralis_Contig882:45648..50423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size235
Hectar predicted targeting categoryother localisation
Exons2
Cds size213
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791770.745457-CDS-P-littoralis_Contig882:45647..458101680791770.745457-CDS-P-littoralis_Contig882:45647..45810Pylaiella littoralis U1_48CDSP-littoralis_Contig882 45648..45810 -
1680791770.7557416-CDS-P-littoralis_Contig882:50351..504011680791770.7557416-CDS-P-littoralis_Contig882:50351..50401Pylaiella littoralis U1_48CDSP-littoralis_Contig882 50352..50401 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791770.7681367-UTR-P-littoralis_Contig882:50401..504231680791770.7681367-UTR-P-littoralis_Contig882:50401..50423Pylaiella littoralis U1_48UTRP-littoralis_Contig882 50402..50423 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig882.18.1prot_P-littoralis_Contig882.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig882 45648..50401 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig882.18.1

>prot_P-littoralis_Contig882.18.1 ID=prot_P-littoralis_Contig882.18.1|Name=mRNA_P-littoralis_Contig882.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=71bp
MKCHQGKACNEGMQRDSGCTSEGSPQACLENSPGDERVTPKGGLGLGSLY
YCRRGWCSHVLLLLLRYYFSS
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mRNA from alignment at P-littoralis_Contig882:45648..50423-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig882.18.1 ID=mRNA_P-littoralis_Contig882.18.1|Name=mRNA_P-littoralis_Contig882.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4776bp|location=Sequence derived from alignment at P-littoralis_Contig882:45648..50423- (Pylaiella littoralis U1_48)
GGGGCAAGGAGCATCCACCGCAATGAAATGCCATCAGGGCAAAGCCTGTA
ATGAAGGAATGCAACGAGACAGGTGAGATAGGTAATTGTATACATCGTCA
CTTCTAAATATTGAGAAGCACGATAACCACTGAACCACACAGTCAGCGCT
GACTGTGTGGTTCAGTGGAAGCTAAAGACCGGGGTTCGATTCTCTCCCTG
TGCATTTTATTTGCGCCCGAATTTATGAGGAAGAAAAAGTCTATGAGACT
TCGCGAATAAAGCCGATAACCTGCTTGTATCGATCTGGCAAGCACAGCGC
TGATCACAGGGATTGCAACCCTGGGGAGAGATGTCATGGTTCGTTACCTG
AACGGACCGTGGGATTTAGCTTTTATTGAGAAGCACGATAACCACTGAAC
CACACAGTCAGCGCTGACTGTGTAGTTCAGTGGTTATCGTGCATCTCAAT
AAAAGCTAAAGACCGGGGTTCGATTCTCTCCCTGTGCATTTTATTTGCGC
CCGAATTTATGAGGAAGAAAAAGTCTATGAGACTTCGCGAATAAAGCCGA
TAACCTGCTTGTATCGATCTGGCAAGCACAGCGCTGATCACAGGGATTGC
AACCCTGGGGAGAGATGTCATGGTTCGTTACCTGAACGGACCGTGGGATT
TAGCTTTTATTGAGAAGCACGATAACCACTGAACCACACAGTCAGCGCTG
ACTGTGTAGTTCAGTGGTTATCGTGCTTCTCAACACTAAATACGGTAATA
CTTGAACAACCCACCGTCCACAGCCCGACAAGCAAATTGAAGAAACGTGC
CATACTGGAAGGTGTGTGTGTGTACGAGGGCAGGCTGTGTGTGTGATTTT
TCTGCTTCCCCCCGGGGTATTTCCCCCCCCCGGGTACCGTTGACAAAAAT
ACAAAAGATCCCCCCCCTGTTGTCATCTCCCCCCCGGGGAGAGTGATTTG
ACAAAAAAAAAACACTCCCCTCCCGGGGCCCTGACAACGCAGATTACGGT
AACTTAGTCCACCATATCAAAGGAAAATGAAGTCAGGGATGAGAAATAAT
ACCGCAACAACAGCAGCAGCACATGCGAACACCAACCTCTACGACAGTAA
TACAAACTGCCTAGACCCAGCCCTCCTTTTGGAGTCACTCTCTCGTCGCC
CGGCGAGTTCTCTAAGCATGCTTGCGGGCTTCCCTCCGATGTACAGCCGC
TGTGCGGAACACATCGGACGTACGTGTGGAAAAAAGGTGGTTGTTGCGTT
GCTCATCATATCATGTACGTACTTACTTGTCGCTCATCATCATGTATGTA
CTACTGTATGTCATGTACTCGGTTGTGCACAGCAGTTAGTGTCGGCACAT
CTAAGAAAGTTTATGGCCAAATAAAACGCATCGCTCTCTCCTCCCGATAT
CATTTATTCTTGCATGCCGTAATTCGCCCTTGCGCCTCCCCGCGCAAAAA
GGCCGAAGGGCAGAAAAACAGAGAACACAAAAAAGAAAAACTTCGAAGTA
CAAAAGTACGTCGTAACTCAGTCCACCATATCAAAGGAAAATGAAGTGAG
GGATGATAAATAATACCGCAACAACAGCAGCAGCACATGCGAACACCAAC
CTTTACCACAGTAATACAAACTGCCTAGACCCAACCCTCCTTTTGGAGTC
ACTCTCTTGTCGCCCGGCTAGTTCTCTAAGCATGCTTGCGGGCTTCCCTC
TGATGTACAGCCGCTGTGGGGAACAACAGCCGACGTACGTGTGGAAAAAA
GTGGTTGTTGCGTTGCTCATCATAATATCATGTACGTACTTACTTGTCGC
TCGTCATATATGTACTGAAGTCATTCACTCGGTTGTGCACAGCAGTTAGT
GTCGGCACATCTAAGAAAGATGATAAAGTCACAACTGCTGTAGAAACCTC
CTGGGAGTATGATGAAGCAGCTGTAAAACACGGCTGAATTGCCTGTTGTG
TGCTGTGTGTGCACGAAGTGGATTGACGTGCGCGGCTGCTGTTTTGGTCG
TTAGAAAAATGAAATTTTTAAAACAGAAGAAATGCGAAGTTTTATTAAGG
GAGGATCACAGAACATCCGTGAGGAGGGACACACCTGCTCTCGTCGTTGA
GCTACACAAAGGAACACCCCCTTTGCAACAGAGCACGTTACACGCAAATA
GACTAGAGAACGTCAAATCGAGAAGCAAATGCCCACTAAAGGAGGCAGTA
CCTCGTACAACAACAACAGTCGACCGGATAGCAGTACCGGCAAAAATACC
CAAAAGCCCGGTGAACAACGAAAAAAACACCTTACGCAGCCCGGCGTCAC
ACCCGCAGGTATACCGACGGGTAGAGGCAGTCGTGTGGGCAGCGACGGAA
ATGTGAATGCCCTCGCCCTGTACTCTACGCTCAGGAAACCTGTACTACTG
CTGCTGTGAGAGTTTGTTCCAGTGAGCGCTAAGAGGTCATTCCATGGACA
CGTCACCCAAAAGGTACTATCTGTGTTCTCAGCAGTCGGGCCAGTTCTAT
GTTCAGCAGGACACTAGGGCCATCCCCGCAAGTAAGTGAAGGTTCCCGGG
CAACAGCGAAAATAAATCCCTCCGCTCTGTGCTCTCGTGCTCTCCATTCT
CGACAAACCACTCACTGCTGCTCTGCATATGAAGTGATACATTGAAAGGT
TCTTCGTCCATCATCCAAGAGAAGAGTTACGTGTTGAGCTTGGAAATACG
CGCTGGATCGACTTTGTGTGCGTGGTGGTCGTTTCGGAAACCGCCTCCGA
AAAAGTATAACCAAAAATAAACAAAGCCGCCCTCTCCCGCCATTACTTTG
TTGTGTACTGTAGACTATGCCTTCTTTCGAAATTAAAATATATCAAAACG
CGCCAATACGAAGTCTGGAGTACTAGTATTTAGGAACGCCAGCCTCCACG
AATCAACCAACCGTCGTTTCAGAGTTTTCTCTCTAGTAGTGTTGTAAATA
ATACGTACGGGCTGTGATAGTGTTTTGATCATTTATCACTACTGTGGTCT
GTTGTTCAGCACTCACTCATGTCACCCCACTTTCATGTGCTTGCTCTCTC
GCATCATACACATGCTATGACGTTTATACCAACGTACCTGCTGCTGCTGT
GCAACAACAGAGGAAGCAGTATTTCCACACGGGCCACATTTCGGAAGGAA
AACGAGAGACACAACGACACCTACTTGTAGTCGCGTTTTTTTTTGGAAGT
TCGTCGCACACACCCGGGTACCCTGACGAAAAGCAAGCACACTCGGGTAA
CGGCCAAGAAAAATGACAATGTTTCTCACGGTAACTTCCGAGCAACAAGA
GAGGCGGCACCAACAGCTTTGTTCGAGAGCTCTACAAATGTTTGTGCATG
TATTTGTCGTCATCTCATCTGATCAGGATCAACACCTACCTGGCGGTAAA
TGTTAGGCGGATCAGCTAGAGGGTCAAATAAAAGTTATCAGACCAACGCA
TTCGACAATTCAGGGGCGCGTAAATTTTGAGCATACATACCACAACATGG
TATACCTGCGGGTGTGACGCCGGGCTGCGTAAGGTGTTTTTTTCGTTGTT
CACCGGGCTTTTGGGTATTTTTGCCGGTACTGCTATCCGGTCGACTGTTG
TTGTTGTACGAGGTACTGCCTCCTTTAGTGGGCATTTGTTTCTCGATTTG
ACGTTCTCTAGTCTCTGTGCGTGTAACGTGCTCTGTTGCAAAGGGGGTGT
TCCTTTGTGTAGCTCAACGACGAGAGCAGGTGTGTCCCTCCTCACGGATG
TTCTGTGATCCTCCCTTTATAAAACTTCGCATTTCTTCTGTTTTAAAAAT
TTCATTTTTCTAACGACCAAAACAGCAGCCGCGCACGTCAATCCACTTCG
TGCACACACAGCACACAACAGGCAATTCAGCCGTGTTTTACAGCTGCTTC
ATCATACTCCCAGGAGGTTTCTACAGCAGTTGTGACTTTATCATCTTTCT
TAGATGTGCCGACACTAACTGCTGTGCACAACCGAGTGAATGACTTCAGT
ACATATATGACGAGCGACAAGTAAGTACGTACATGATATTATGATGAGCA
ACGCAACAACCACTTTTTTCCACACGTACGTCGGCTGTTGTTCCCCACAG
CGGCTGTACATCAGAGGGAAGCCCGCAAGCATGCTTAGAGAACTAGCCGG
GCGACAAGAGAGTGACTCCAAAAGGAGGGTTGGGTCTAGGCAGTTTGTAT
TACTGTGGTAAAGGTTGGTGTTCGCATGTGCTGCTGCTGTTGTTGCGGTA
TTATTTCTCATCCCTCACTTCATTTTCCTTTGATATGGTGGACTGAGTTA
CCACGTACTTTTGTACTTCGAAGTTTTTCTTTTTTGTGTTCTCTGTTTTT
CTGCCCTTCGGCCTTTTTGCGCGGGGAGGCGCAAGGGCGAATTACGGCAT
GCAAGAATAAATGATATCGGGAGGAGAGAGCGATGCGTTTTATTTGGCCA
TAAACTTTCTTAGATGTGCCGACACTAACTGCTGTGCACAACCGAGTACA
TGACATACAGTAGTACATACATGATGATGAGCGACAAGTAAGTACGTACA
TGATATGATGAGCAACGTAACAACCACATTTTTCCACACGTACGTCCGAT
GTGTTCCGCACAGCGGCTGTACATCGGAGGGAAGCCCGCAAGCATGCTTA
GAGAACTCGCCGGGCGACGAGAGAGTGACTCCAAAAGGAGGGTTGGGTCT
AGGCAGTTTGTATTACTGTCGTAGAGGTTGGTGTTCGCATGTGCTGCTGC
TGTTGTTGCGGTATTATTTCTCATCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig882:45648..50423-

>mRNA_P-littoralis_Contig882.18.1 ID=mRNA_P-littoralis_Contig882.18.1|Name=mRNA_P-littoralis_Contig882.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=213bp|location=Sequence derived from alignment at P-littoralis_Contig882:45648..50423- (Pylaiella littoralis U1_48)
ATGAAATGCCATCAGGGCAAAGCCTGTAATGAAGGAATGCAACGAGACAG
CGGCTGTACATCGGAGGGAAGCCCGCAAGCATGCTTAGAGAACTCGCCGG
GCGACGAGAGAGTGACTCCAAAAGGAGGGTTGGGTCTAGGCAGTTTGTAT
TACTGTCGTAGAGGTTGGTGTTCGCATGTGCTGCTGCTGTTGTTGCGGTA
TTATTTCTCATCC
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