mRNA_P-littoralis_Contig881.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig881.9.1
Unique NamemRNA_P-littoralis_Contig881.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig881.9.1 vs. uniprot
Match: A0A6H5JJA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA7_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 1.760e-79
Identity = 115/126 (91.27%), Postives = 119/126 (94.44%), Query Frame = 3 
Query:    3 GFRIHDTAAAHDFLSEYARSKEEDEGGYLGKWSPYKIANFKMELIGANQIPRPRVDLTGIPGSSKLYQFMAAENQDQRLRSSLGVEPADSRVVVAAGN*HANPGPDVVGPAPRPEKVTRKYTCRVR 380
            GFRIHDTAAAHDFLS YA+SKEED GG LGKWSPYKIANFKMELIGAN+IPRPRVDLTGIPGSSKLYQFM AENQ+QRLRSSLGVEPADS VVV AGN HANPGP+VVGPAPRPEKVTRKYTCRVR
Sbjct:    8 GFRIHDTAAAHDFLSAYAKSKEEDAGGCLGKWSPYKIANFKMELIGANEIPRPRVDLTGIPGSSKLYQFMGAENQEQRLRSSLGVEPADSGVVVVAGNEHANPGPEVVGPAPRPEKVTRKYTCRVR 133
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BLAST of mRNA_P-littoralis_Contig881.9.1 vs. uniprot
Match: A0A6H5KF65_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF65_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 8.550e-50
Identity = 88/101 (87.13%), Postives = 91/101 (90.10%), Query Frame = 3 
Query:    3 GFRIHDTAAAHDFLSEYARSKEEDEGGYLGKWSPYKIANFKMELIGANQIPRPRVDLTGIPGSSKLYQFMAAENQDQRLRSSLGVEPADSRV-VVAAGN*H 302
            GFRIHD AAAHDFLS YA+SKEEDEGG LGKWSPYKIANFK+ELIGANQI RPRVDLTGI G+SKLYQFM AENQD RL SSLGVEPADSRV VVAAGN H
Sbjct:  528 GFRIHDNAAAHDFLSAYAKSKEEDEGGCLGKWSPYKIANFKIELIGANQIRRPRVDLTGIRGTSKLYQFMGAENQDHRLSSSLGVEPADSRVDVVAAGNGH 628
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BLAST of mRNA_P-littoralis_Contig881.9.1 vs. uniprot
Match: A0A6H5KXK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK6_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 4.730e-24
Identity = 63/136 (46.32%), Postives = 79/136 (58.09%), Query Frame = 3 
Query:    3 GFRIHDTAAAHDFLSEYARSKEEDEGGYLGKWSPYKIANFKMELIGANQIPRPRVDLTGIPGSSKLYQFMAAENQDQRLRSSLGVEP----------ADSRVVVAAGN*HANPGPDVVGPAPRPEKVTRKYTCRVR 380
            G RIH+T AA DFL  YA +KE D GG+   WSPY+I  F ++L+G  +IPRP VDLTGI GSSKLYQFM AE Q++   S +GVE            +  VVV      A+    +  PA     VT++Y  RVR
Sbjct:  126 GQRIHNTQAAADFLQVYAEAKE-DGGGHFSSWSPYRIKRFHIKLLGHREIPRPFVDLTGISGSSKLYQFMGAEVQEEES-SGVGVEVQKEDGVSLVGGEKEVVVNPQRWQADESTVLTLPA-----VTKRYKLRVR 254
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BLAST of mRNA_P-littoralis_Contig881.9.1 vs. uniprot
Match: A0A6H5KR28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR28_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 5.930e-24
Identity = 62/126 (49.21%), Postives = 75/126 (59.52%), Query Frame = 3 
Query:    3 GFRIHDTAAAHDFLSEYARSKEEDEGGYLGKWSPYKIANFKMELIGANQIPRPRVDLTGIPGSSKLYQFMAAENQDQRLRSSLGVEPADSRVVVAAGN*HANPGPDVVGPAPRPEKVTRKYTCRVR 380
            G RIHDT A  DFL  YA +KE D GG+   W PY+I +F ++L+G  +IPRP VDLTGI GSSKLYQFM AE Q Q   S +GVE AD  +V+               PA     VT++Y  RVR
Sbjct:  126 GQRIHDTQATADFLKAYAEAKE-DRGGHFSTWFPYRIKSFHIKLLGHREIPRPIVDLTGISGSSKLYQFMGAEVQ-QEESSGVGVE-ADESIVLTL-------------PA-----VTKRYELRVR 230
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BLAST of mRNA_P-littoralis_Contig881.9.1 vs. uniprot
Match: A0A6H5KT99_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT99_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 6.890e-24
Identity = 63/136 (46.32%), Postives = 80/136 (58.82%), Query Frame = 3 
Query:    3 GFRIHDTAAAHDFLSEYARSKEEDEGGYLGKWSPYKIANFKMELIGANQIPRPRVDLTGIPGSSKLYQFMAAENQDQR-------LRSSLGVEP---ADSRVVVAAGN*HANPGPDVVGPAPRPEKVTRKYTCRVR 380
            G RIHDT AA DFL  YA +KE D GG+   WSPY+I  F ++L+G  +IPRP VDLTGI GSSKLYQFM AE Q++        ++   GV P    ++ VVV      A+    +  PA     VT++Y  RVR
Sbjct:  729 GQRIHDTEAAADFLKAYAEAKE-DGGGHFSTWSPYRIRRFHIKLLGHREIPRPFVDLTGISGSSKLYQFMGAEVQEEESSGVSVEVQKESGVPPLVGGENEVVVNPLRWQADESIVLTVPA-----VTKRYKLRVR 858
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BLAST of mRNA_P-littoralis_Contig881.9.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 7.120e-24
Identity = 63/136 (46.32%), Postives = 80/136 (58.82%), Query Frame = 3 
Query:    3 GFRIHDTAAAHDFLSEYARSKEEDEGGYLGKWSPYKIANFKMELIGANQIPRPRVDLTGIPGSSKLYQFMAAENQDQR-------LRSSLGVEP---ADSRVVVAAGN*HANPGPDVVGPAPRPEKVTRKYTCRVR 380
            G RIHDT AA DFL  YA +KE D GG+   WSPY+I  F ++L+G  +IPRP VDLTGI GSSKLYQFM AE Q++        ++   GV P    ++ VVV      A+    +  PA     VT++Y  RVR
Sbjct: 1353 GQRIHDTEAAADFLKAYAEAKE-DGGGHFSTWSPYRIRRFHIKLLGHREIPRPFVDLTGISGSSKLYQFMGAEVQEEESSGVSVEVQKESGVPPLVGGENEVVVNPLRWQADESIVLTVPA-----VTKRYKLRVR 1482
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BLAST of mRNA_P-littoralis_Contig881.9.1 vs. uniprot
Match: A0A6H5KY26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY26_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 3.570e-23
Identity = 54/97 (55.67%), Postives = 64/97 (65.98%), Query Frame = 3 
Query:    3 GFRIHDTAAAHDFLSEYARSKEEDEGGYLGKWSPYKIANFKMELIGANQIPRPRVDLTGIPGSSKLYQFMAAENQDQRLRSSLGVEPADSRVVVAAG 293
            G RIHDT AA DFL  YA +KE D GG+   WSPY+I  F ++L+G  +IPRP VDL GI GSSKLYQFMAAE Q++   S +GVE      V   G
Sbjct:  441 GQRIHDTEAAADFLKAYAEAKE-DGGGHFSTWSPYRIRRFHIKLLGHREIPRPFVDLMGISGSSKLYQFMAAEVQEEES-SGVGVEVQKENGVPLVG 535
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BLAST of mRNA_P-littoralis_Contig881.9.1 vs. uniprot
Match: A0A6H5KXG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXG9_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 4.100e-23
Identity = 63/131 (48.09%), Postives = 77/131 (58.78%), Query Frame = 3 
Query:    3 GFRIHDTAAAHDFLSEYARSKEEDEGGYLGKWSPYKIANFKMELIGANQIPRPRVDLTGIPGSSKLYQFMAAENQDQRLRSSLGVEPADSRVVVAAGN*HANP-----GPDVVGPAPRPEKVTRKYTCRVR 380
            G RIHDT AA DF+  YA +KE D GG+   WSPY+I  F ++L+G  +IPRP VDLTGI GSSKLYQFM AE Q++   S + VE      VVA      NP        +V   P    VT++Y  RVR
Sbjct:  471 GQRIHDTQAAADFVKAYAEAKE-DGGGHFSTWSPYRIRRFHIKLLGHREIPRPFVDLTGISGSSKLYQFMGAEVQEEES-SGVSVEVQKESGVVA------NPQRWQADESIVRTLPA---VTKRYKLRVR 590
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BLAST of mRNA_P-littoralis_Contig881.9.1 vs. uniprot
Match: A0A6H5K491_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K491_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.040e-22
Identity = 53/97 (54.64%), Postives = 64/97 (65.98%), Query Frame = 3 
Query:    3 GFRIHDTAAAHDFLSEYARSKEEDEGGYLGKWSPYKIANFKMELIGANQIPRPRVDLTGIPGSSKLYQFMAAENQDQRLRSSLGVEPADSRVVVAAG 293
            G RIH+T AA DFL  YA +KE D GG+   WSPY+I  F ++L+G  +IPRP VDLTGI GSSKLYQFM AE Q++   S +GVE      V   G
Sbjct:  463 GQRIHNTQAAADFLQVYAEAKE-DGGGHFSSWSPYRIKRFHIKLLGHREIPRPFVDLTGISGSSKLYQFMGAEVQEEES-SGVGVEVQTENGVPLVG 557
[Close]
BLAST of mRNA_P-littoralis_Contig881.9.1 vs. uniprot
Match: A0A6H5K614_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K614_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.210e-21
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 3 
Query:  231 QRLRSSLGVEPADSRVVVAAGN*HANPGPDVVGPAPRPEKVTRKYTCRVR 380
            QR RSSLGVEPADSRVVVAAG+ HANPGP+VVGPAPRPEKVTRKYTCRVR
Sbjct:  208 QRPRSSLGVEPADSRVVVAAGDEHANPGPEVVGPAPRPEKVTRKYTCRVR 257
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig881.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5JJA7_9PHAE1.760e-7991.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF65_9PHAE8.550e-5087.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KXK6_9PHAE4.730e-2446.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR28_9PHAE5.930e-2449.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT99_9PHAE6.890e-2446.32Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWW3_9PHAE7.120e-2446.32MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5KY26_9PHAE3.570e-2355.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXG9_9PHAE4.100e-2348.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K491_9PHAE1.040e-2254.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K614_9PHAE1.210e-2192.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig881contigP-littoralis_Contig881:9865..10245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size381
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size174
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791770.2541244-UTR-P-littoralis_Contig881:9864..99891680791770.2541244-UTR-P-littoralis_Contig881:9864..9989Pylaiella littoralis U1_48UTRP-littoralis_Contig881 9865..9989 +
1680791770.2783434-UTR-P-littoralis_Contig881:10163..102451680791770.2783434-UTR-P-littoralis_Contig881:10163..10245Pylaiella littoralis U1_48UTRP-littoralis_Contig881 10164..10245 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791770.2680528-CDS-P-littoralis_Contig881:9989..101631680791770.2680528-CDS-P-littoralis_Contig881:9989..10163Pylaiella littoralis U1_48CDSP-littoralis_Contig881 9990..10163 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig881.9.1prot_P-littoralis_Contig881.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig881 9990..10163 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig881.9.1

>prot_P-littoralis_Contig881.9.1 ID=prot_P-littoralis_Contig881.9.1|Name=mRNA_P-littoralis_Contig881.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=58bp
MELIGANQIPRPRVDLTGIPGSSKLYQFMAAENQDQRLRSSLGVEPADSR
VVVAAGN*
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mRNA from alignment at P-littoralis_Contig881:9865..10245+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig881.9.1 ID=mRNA_P-littoralis_Contig881.9.1|Name=mRNA_P-littoralis_Contig881.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=381bp|location=Sequence derived from alignment at P-littoralis_Contig881:9865..10245+ (Pylaiella littoralis U1_48)
GAGGCTTCCGCATCCACGACACCGCCGCCGCGCACGACTTTCTTTCAGAA
TACGCCAGGAGCAAAGAAGAGGACGAAGGAGGTTACTTGGGGAAGTGGTC
TCCCTACAAGATCGCCAACTTCAAGATGGAGCTGATTGGAGCCAACCAGA
TCCCCCGCCCGCGTGTTGATCTGACGGGTATCCCTGGAAGTTCCAAGTTG
TACCAGTTCATGGCGGCGGAGAATCAGGACCAGAGGCTTCGTAGTAGCCT
AGGGGTGGAACCAGCAGATTCTAGAGTCGTGGTAGCGGCAGGGAATTGAC
ACGCGAACCCTGGCCCCGACGTAGTCGGACCAGCCCCGCGCCCCGAAAAG
GTTACGAGAAAGTACACGTGCCGTGTTCGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig881:9865..10245+

>mRNA_P-littoralis_Contig881.9.1 ID=mRNA_P-littoralis_Contig881.9.1|Name=mRNA_P-littoralis_Contig881.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=174bp|location=Sequence derived from alignment at P-littoralis_Contig881:9865..10245+ (Pylaiella littoralis U1_48)
ATGGAGCTGATTGGAGCCAACCAGATCCCCCGCCCGCGTGTTGATCTGAC
GGGTATCCCTGGAAGTTCCAAGTTGTACCAGTTCATGGCGGCGGAGAATC
AGGACCAGAGGCTTCGTAGTAGCCTAGGGGTGGAACCAGCAGATTCTAGA
GTCGTGGTAGCGGCAGGGAATTGA
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