mRNA_P-littoralis_Contig881.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig881.8.1
Unique NamemRNA_P-littoralis_Contig881.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig881.8.1 vs. uniprot
Match: A0A6H5JF90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF90_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 9.260e-58
Identity = 85/129 (65.89%), Postives = 100/129 (77.52%), Query Frame = 2
Query:    2 VEPKVSQCACMIHTQQKLYLDALRFLMGAIHVNCDCTCSWCDENGCKKWAGMCKSLHAFSEELACPKVDLLAGDASGGFEFWGRKSACVAGTCAECGFGKPNGIPTDCQAFASHAERTVGWIRFMDQKM 388
            V+P  SQCAC IHTQQ LYL+AL FLMG+IH +CDC C+WCD+ GCK+W+ MC+ L  FS+ LAC KV+LL GD+ GGFEFWGRK AC A  C+ECGFGKP GIPT+C A A + ER V WIRF DQ M
Sbjct:  378 VDPTASQCACQIHTQQTLYLEALSFLMGSIHQDCDCECNWCDDLGCKRWSVMCQDLSKFSDALACEKVNLLEGDSDGGFEFWGRKPACAAMKCSECGFGKPGGIPTNCTAIAKNRERVVAWIRFEDQTM 506          
BLAST of mRNA_P-littoralis_Contig881.8.1 vs. uniprot
Match: A0A6H5K7E6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7E6_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 8.320e-56
Identity = 85/129 (65.89%), Postives = 100/129 (77.52%), Query Frame = 2
Query:    2 VEPKVSQCACMIHTQQKLYLDALRFLMGAIHVNCDCTCSWCDENGCKKWAGMCKSLHAFSEELACPKVDLLAGDASGGFEFWGRKSACVAGTCAECGFGKPNGIPTDCQAFASHAERTVGWIRFMDQKM 388
            V+P  SQCAC IHTQQ LYL+AL FLMG+IH +CDC C+WCD+ GCK+W+ MC+ L  FS+ LAC KV+LL GD+ GGFEFWGRK AC A  C+ECGFGKP GIPT+C A A + ER V WIRF DQ M
Sbjct:  378 VDPTASQCACQIHTQQTLYLEALSFLMGSIHQDCDCECNWCDDLGCKRWSVMCQDLSKFSDALACEKVNLLEGDSDGGFEFWGRKPACAAMKCSECGFGKPGGIPTNCTAIAKNRERVVAWIRFEDQTM 506          
BLAST of mRNA_P-littoralis_Contig881.8.1 vs. uniprot
Match: A0A6H5KI39_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI39_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 6.990e-54
Identity = 82/129 (63.57%), Postives = 89/129 (68.99%), Query Frame = 2
Query:    2 VEPKVSQCACMIHTQQKLYLDALRFLMGAIHVNCDCTCSWCDENGCKKWAGMCKSLHAFSEELACPKVDLLAGDASGGFEFWGRKSACVAGTCAECGFGKPNGIPTDCQAFASHAERTVGWIRFMDQKM 388
            VEPKVSQCAC IHTQQ LY  A   LM AIH NC+CTC+WCD +GC KW  MCK LH+FSE LAC K   LA    G FE WGRK ACVA  C E GFG P GIP +C A  S A+R VGW+RF DQ M
Sbjct:  125 VEPKVSQCACQIHTQQGLYHKAFEMLMPAIHANCECTCNWCDGSGCGKWMAMCKDLHSFSEALACEKAGFLAEGRGGRFEHWGRKPACVAMECPEYGFGNPGGIPMNCDALGSMADRVVGWLRFEDQVM 253          
BLAST of mRNA_P-littoralis_Contig881.8.1 vs. uniprot
Match: A0A6H5KT99_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT99_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 1.490e-53
Identity = 87/130 (66.92%), Postives = 93/130 (71.54%), Query Frame = 2
Query:    2 VEPKVSQCACMIHTQQKLYLDALRFLMGAIHVNCDCTCSWCDE-NGCKKWAGMCKSLHAFSEELACPKVDLLAGDASGGFEFWGRKSACVAGTCAECGFGKPNGIPTDCQAFASHAERTVGWIRFMDQKM 388
            VEPKVSQCAC IHTQQ LYL A   LM AIH NCDCTC WCD  +GC KW  MCK LH+FSE LAC KVD L  D  G FE WGRK ACVA  C+ECGFG P GIP +C A  S A+R VGW+RF DQ M
Sbjct:  390 VEPKVSQCACQIHTQQGLYLKAFEMLMPAIHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFADQVM 519          
BLAST of mRNA_P-littoralis_Contig881.8.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 2.480e-53
Identity = 87/130 (66.92%), Postives = 93/130 (71.54%), Query Frame = 2
Query:    2 VEPKVSQCACMIHTQQKLYLDALRFLMGAIHVNCDCTCSWCDE-NGCKKWAGMCKSLHAFSEELACPKVDLLAGDASGGFEFWGRKSACVAGTCAECGFGKPNGIPTDCQAFASHAERTVGWIRFMDQKM 388
            VEPKVSQCAC IHTQQ LYL A   LM AIH NCDCTC WCD  +GC KW  MCK LH+FSE LAC KVD L  D  G FE WGRK ACVA  C+ECGFG P GIP +C A  S A+R VGW+RF DQ M
Sbjct: 1014 VEPKVSQCACQIHTQQGLYLKAFEMLMPAIHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFADQVM 1143          
BLAST of mRNA_P-littoralis_Contig881.8.1 vs. uniprot
Match: A0A6H5KXG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXG9_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 5.470e-51
Identity = 82/130 (63.08%), Postives = 90/130 (69.23%), Query Frame = 2
Query:    2 VEPKVSQCACMIHTQQKLYLDALRFLMGAIHVNCDCTCSWCDE-NGCKKWAGMCKSLHAFSEELACPKVDLLAGDASGGFEFWGRKSACVAGTCAECGFGKPNGIPTDCQAFASHAERTVGWIRFMDQKM 388
            VEPKVS+CAC  HTQQ + L A   LM A H NCDCTC WCD  +GC KW  MCK LH+FSE LAC KVD L  D  G FE WGRK ACVA  C+ECGFG P GIP +C A  S A+R VGW+RF DQ M
Sbjct:   48 VEPKVSKCACQTHTQQGIDLKAFEMLMPATHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFADQVM 177          
BLAST of mRNA_P-littoralis_Contig881.8.1 vs. uniprot
Match: A0A6H5KY26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY26_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 1.340e-50
Identity = 82/130 (63.08%), Postives = 90/130 (69.23%), Query Frame = 2
Query:    2 VEPKVSQCACMIHTQQKLYLDALRFLMGAIHVNCDCTCSWCDE-NGCKKWAGMCKSLHAFSEELACPKVDLLAGDASGGFEFWGRKSACVAGTCAECGFGKPNGIPTDCQAFASHAERTVGWIRFMDQKM 388
            VEPKVSQCAC IHTQQ LYL A   LM A+H NCDCTC WCD  +GC KW  MCK LH+FSE L C KVD L  D  G FE WG K ACVA  C+EC FG P+ IP +C A  S A+R VGW+RF DQ M
Sbjct:  102 VEPKVSQCACQIHTQQGLYLKAFEMLMPAMHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALDCEKVDCLEEDRGGRFEHWGGKPACVAMECSECRFGNPDDIPMNCDALGSMADRVVGWLRFEDQVM 231          
BLAST of mRNA_P-littoralis_Contig881.8.1 vs. uniprot
Match: A0A6H5K491_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K491_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 1.100e-48
Identity = 82/130 (63.08%), Postives = 91/130 (70.00%), Query Frame = 2
Query:    2 VEPKVSQCACMIHTQQKLYLDALRFLMGAIHVNCDCTCSWCDE-NGCKKWAGMCKSLHAFSEELACPKVDLLAGDASGGFEFWGRKSACVAGTCAECGFGKPNGIPTDCQAFASHAERTVGWIRFMDQKM 388
            VEPK+S CAC IHTQQ LYL  +  LM A+H NCDCTC  CD  +GC KW  MCK LH+FSE LAC KVD L  D  G FE WGRK ACVA  C+ECGFG P GIP +C A  S A+R VGW+RF DQ M
Sbjct:  125 VEPKISPCACQIHTQQGLYLK-VEMLMPAMHSNCDCTCKRCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGKFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFEDQVM 253          
BLAST of mRNA_P-littoralis_Contig881.8.1 vs. uniprot
Match: A0A6H5L4W3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4W3_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.490e-42
Identity = 66/105 (62.86%), Postives = 73/105 (69.52%), Query Frame = 2
Query:   77 LMGAIHVNCDCTCSWCDE-NGCKKWAGMCKSLHAFSEELACPKVDLLAGDASGGFEFWGRKSACVAGTCAECGFGKPNGIPTDCQAFASHAERTVGWIRFMDQKM 388
            LM A+H NCDCTC WCD  +GC KW  MCK LH+FSE LAC KVD L  D  G FE WGRK ACVA  C+ECGFG P GIP  C A  S A+R VGW+RF +Q M
Sbjct:    2 LMPAMHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMKCDALESMADRVVGWLRFENQVM 106          
BLAST of mRNA_P-littoralis_Contig881.8.1 vs. uniprot
Match: A0A6H5JE40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE40_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.140e-24
Identity = 46/65 (70.77%), Postives = 49/65 (75.38%), Query Frame = 2
Query:    2 VEPKVSQCACMIHTQQKLYLDALRFLMGAIHVNCDCTCSWCDE-NGCKKWAGMCKSLHAFSEELA 193
            VEPKVSQCAC IHTQQ LYL A   LM A+H NCDCTC WCD  +GC KW  MCK LH+FSE LA
Sbjct:  125 VEPKVSQCACQIHTQQGLYLKAFEMLMPAMHANCDCTCKWCDGGSGCGKWMAMCKYLHSFSEALA 189          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig881.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JF90_9PHAE9.260e-5865.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7E6_9PHAE8.320e-5665.89Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI39_9PHAE6.990e-5463.57Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT99_9PHAE1.490e-5366.92Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWW3_9PHAE2.480e-5366.92MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5KXG9_9PHAE5.470e-5163.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY26_9PHAE1.340e-5063.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K491_9PHAE1.100e-4863.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4W3_9PHAE1.490e-4262.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JE40_9PHAE1.140e-2470.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig881contigP-littoralis_Contig881:8690..9077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size388
Hectar predicted targeting categoryother localisation
Exons1
Cds size357
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791770.2072937-UTR-P-littoralis_Contig881:8689..87201680791770.2072937-UTR-P-littoralis_Contig881:8689..8720Pylaiella littoralis U1_48UTRP-littoralis_Contig881 8690..8720 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791770.2192554-CDS-P-littoralis_Contig881:8720..90771680791770.2192554-CDS-P-littoralis_Contig881:8720..9077Pylaiella littoralis U1_48CDSP-littoralis_Contig881 8721..9077 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig881.8.1prot_P-littoralis_Contig881.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig881 8721..9077 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig881.8.1

>prot_P-littoralis_Contig881.8.1 ID=prot_P-littoralis_Contig881.8.1|Name=mRNA_P-littoralis_Contig881.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=119bp
MIHTQQKLYLDALRFLMGAIHVNCDCTCSWCDENGCKKWAGMCKSLHAFS
EELACPKVDLLAGDASGGFEFWGRKSACVAGTCAECGFGKPNGIPTDCQA
FASHAERTVGWIRFMDQKM
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mRNA from alignment at P-littoralis_Contig881:8690..9077+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig881.8.1 ID=mRNA_P-littoralis_Contig881.8.1|Name=mRNA_P-littoralis_Contig881.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=388bp|location=Sequence derived from alignment at P-littoralis_Contig881:8690..9077+ (Pylaiella littoralis U1_48)
AGTGGAGCCGAAGGTGTCGCAGTGTGCCTGCATGATCCACACCCAGCAGA AGCTGTATCTCGACGCCCTCAGATTTTTGATGGGTGCAATTCACGTCAAC TGTGACTGCACGTGCAGCTGGTGCGATGAGAACGGTTGTAAGAAGTGGGC GGGGATGTGTAAGAGTCTTCACGCGTTTTCGGAAGAGCTCGCTTGCCCGA AGGTAGACTTGCTGGCGGGAGATGCGTCCGGTGGGTTTGAGTTCTGGGGG AGAAAGTCAGCGTGCGTGGCGGGTACATGCGCTGAGTGCGGGTTTGGAAA GCCCAACGGCATCCCTACCGACTGCCAGGCTTTCGCGAGCCATGCCGAGA GAACGGTGGGGTGGATTCGCTTCATGGACCAAAAAATG
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Coding sequence (CDS) from alignment at P-littoralis_Contig881:8690..9077+

>mRNA_P-littoralis_Contig881.8.1 ID=mRNA_P-littoralis_Contig881.8.1|Name=mRNA_P-littoralis_Contig881.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=357bp|location=Sequence derived from alignment at P-littoralis_Contig881:8690..9077+ (Pylaiella littoralis U1_48)
ATGATCCACACCCAGCAGAAGCTGTATCTCGACGCCCTCAGATTTTTGAT
GGGTGCAATTCACGTCAACTGTGACTGCACGTGCAGCTGGTGCGATGAGA
ACGGTTGTAAGAAGTGGGCGGGGATGTGTAAGAGTCTTCACGCGTTTTCG
GAAGAGCTCGCTTGCCCGAAGGTAGACTTGCTGGCGGGAGATGCGTCCGG
TGGGTTTGAGTTCTGGGGGAGAAAGTCAGCGTGCGTGGCGGGTACATGCG
CTGAGTGCGGGTTTGGAAAGCCCAACGGCATCCCTACCGACTGCCAGGCT
TTCGCGAGCCATGCCGAGAGAACGGTGGGGTGGATTCGCTTCATGGACCA
AAAAATG
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