mRNA_P-littoralis_Contig1205.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1205.5.1
Unique NamemRNA_P-littoralis_Contig1205.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1205.5.1 vs. uniprot
Match: A0A6H5K294_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K294_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.400e-9
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:   25 RCWSCNWSGHRKEDCTTKQSDFVPWFARCDGFGHKEDTCPSEATVL--VVEPPVSEEDL-AVEAQAFAA 222
            RC+ C   GH+   CTTK+ DFVPW ARC+G+GH ++ C +E  VL  VVE    E D+ +VE QAF A
Sbjct:  407 RCFKCGHRGHQAIGCTTKEKDFVPWCARCEGWGHTKEKCATEEAVLAQVVE---RESDVDSVEDQAFCA 472
[Close]
BLAST of mRNA_P-littoralis_Contig1205.5.1 vs. uniprot
Match: A0A6H5K126_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K126_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 3.290e-9
Identity = 43/99 (43.43%), Postives = 56/99 (56.57%), Query Frame = 1 
Query:   25 RCWSCNWSGHRKEDCTTKQSDFVPWFARCDGFGH-KEDTCPSEATVLVVEPPVSEEDLAVEAQAFAAT-----ETATAPYRRRVGV*QRGRARVVNAHQ 303
            RC+ C   GH+   CTTK+ DFVPW ARC+G+GH KE +   EA +  V    S+ D +VE QAF A      E  T      VGV ++G+A V+ A Q
Sbjct:  110 RCFRCGHRGHQANGCTTKEKDFVPWCARCEGWGHTKEKSATEEAVLAQVVEHESDVD-SVEDQAFCAVAVPPGECGTVGEVGLVGVVEQGQA-VITAEQ 206
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BLAST of mRNA_P-littoralis_Contig1205.5.1 vs. uniprot
Match: A0A6H5JL07_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL07_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.310e-8
Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:   25 RCWSCNWSGHRKEDCTTKQSDFVPWFARCDGFGHKEDTCPSEATVL--VVEPPVSEEDL-AVEAQAFAA 222
            RC+ C   GH+   CTT + DFVPW ARC+G+GH ++ C +E  VL  VVE    E D+ +VE QAF A
Sbjct:   99 RCFRCGHRGHQAIGCTTNEKDFVPWCARCEGWGHTKEKCATEEAVLAQVVE---HESDVDSVEDQAFCA 164
[Close]
BLAST of mRNA_P-littoralis_Contig1205.5.1 vs. uniprot
Match: A0A6H5KM18_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM18_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.380e-8
Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:   25 RCWSCNWSGHRKEDCTTKQSDFVPWFARCDGFGHKEDTCPSEATVL--VVEPPVSEEDL-AVEAQAFAA 222
            RC+ C   GH+   CTT + DFVPW ARC+G+GH ++ C +E  VL  VVE    E D+ +VE QAF A
Sbjct:  160 RCFRCGHRGHQAIGCTTNEKDFVPWCARCEGWGHTKEKCATEEAVLAQVVE---HESDVDSVEDQAFCA 225
[Close]
BLAST of mRNA_P-littoralis_Contig1205.5.1 vs. uniprot
Match: A0A6H5KG71_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG71_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.520e-8
Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:   25 RCWSCNWSGHRKEDCTTKQSDFVPWFARCDGFGHKEDTCPSEATVL--VVEPPVSEEDL-AVEAQAFAA 222
            RC+ C   GH+   CTT + DFVPW ARC+G+GH ++ C +E  VL  VVE    E D+ +VE QAF A
Sbjct:  468 RCFRCGHRGHQAIGCTTNEKDFVPWCARCEGWGHTKEKCATEEAVLAQVVE---HESDVDSVEDQAFCA 533
[Close]
BLAST of mRNA_P-littoralis_Contig1205.5.1 vs. uniprot
Match: A0A6H5JEB2_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEB2_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.560e-8
Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:   25 RCWSCNWSGHRKEDCTTKQSDFVPWFARCDGFGHKEDTCPSEATVL--VVEPPVSEEDL-AVEAQAFAA 222
            RC+ C   GH+   CTT + DFVPW ARC+G+GH ++ C +E  VL  VVE    E D+ +VE QAF A
Sbjct:  426 RCFRCGHRGHQAIGCTTNEKDFVPWCARCEGWGHTKEKCATEEAVLAQVVE---HESDVDSVEDQAFCA 491
[Close]
BLAST of mRNA_P-littoralis_Contig1205.5.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.680e-8
Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:   25 RCWSCNWSGHRKEDCTTKQSDFVPWFARCDGFGHKEDTCPSEATVL--VVEPPVSEEDL-AVEAQAFAA 222
            RC+ C   GH+   CTT + DFVPW ARC+G+GH ++ C +E  VL  VVE    E D+ +VE QAF A
Sbjct:  405 RCFRCGHRGHQAIGCTTNEKDFVPWCARCEGWGHTKEKCATEEAVLAQVVE---HESDVDSVEDQAFCA 470
[Close]
BLAST of mRNA_P-littoralis_Contig1205.5.1 vs. uniprot
Match: A0A6H5KY36_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY36_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.580e-8
Identity = 34/69 (49.28%), Postives = 43/69 (62.32%), Query Frame = 1 
Query:   25 RCWSCNWSGHRKEDCTTKQSDFVPWFARCDGFGHKEDTCPSEATVL--VVEPPVSEEDLA-VEAQAFAA 222
            RC+ C   GH+   CTT + DFVPW ARC+G+GH ++ C +E  VL  VVE    E D+  VE QAF A
Sbjct:  106 RCFRCGHRGHQAIGCTTNEKDFVPWCARCEGWGHTKEKCATEEAVLAQVVE---HESDVDYVEVQAFRA 171
[Close]
BLAST of mRNA_P-littoralis_Contig1205.5.1 vs. uniprot
Match: A0A6H5J9T1_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9T1_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.790e-8
Identity = 29/66 (43.94%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:   25 RCWSCNWSGHRKEDCTTKQSDFVPWFARCDGFGHKEDTCPSEATVLVVEPPVSEEDLAVEAQAFAA 222
            RC+ C   GH+   CTT + DFVPW ARC+G+GH ++ C +E  VL        +  +VE QAF A
Sbjct:  427 RCFRCGHRGHQAIGCTTNEKDFVPWCARCEGWGHTKEKCATEEAVLAQVVEHGSDVDSVEDQAFCA 492
[Close]
BLAST of mRNA_P-littoralis_Contig1205.5.1 vs. uniprot
Match: A0A6H5KFW2_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFW2_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.560e-8
Identity = 29/66 (43.94%), Postives = 38/66 (57.58%), Query Frame = 1 
Query:   25 RCWSCNWSGHRKEDCTTKQSDFVPWFARCDGFGHKEDTCPSEATVLVVEPPVSEEDLAVEAQAFAA 222
            RC+ C   GH+   CTT + DFVPW ARC+G+GH +  C +E  VL        +  +VE QAF A
Sbjct:  160 RCFRCGHRGHQAIGCTTNEKDFVPWCARCEGWGHTKGKCATEEAVLAQAVEHESDVDSVEDQAFCA 225
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1205.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5K294_9PHAE2.400e-950.72CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5K126_9PHAE3.290e-943.43CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5JL07_9PHAE1.310e-849.28CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KM18_9PHAE1.380e-849.28CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KG71_9PHAE1.520e-849.28CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JEB2_9PHAE1.560e-849.28CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5JAQ2_9PHAE1.680e-849.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY36_9PHAE2.580e-849.28CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J9T1_9PHAE2.790e-843.94CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5KFW2_9PHAE3.560e-843.94CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1205contigP-littoralis_Contig1205:7235..8683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size539
Hectar predicted targeting categoryother localisation
Exons2
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789516.9365103-CDS-P-littoralis_Contig1205:7234..74661680789516.9365103-CDS-P-littoralis_Contig1205:7234..7466Pylaiella littoralis U1_48CDSP-littoralis_Contig1205 7235..7466 +
1680789516.945273-CDS-P-littoralis_Contig1205:8376..84111680789516.945273-CDS-P-littoralis_Contig1205:8376..8411Pylaiella littoralis U1_48CDSP-littoralis_Contig1205 8377..8411 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789516.9595256-UTR-P-littoralis_Contig1205:8411..86831680789516.9595256-UTR-P-littoralis_Contig1205:8411..8683Pylaiella littoralis U1_48UTRP-littoralis_Contig1205 8412..8683 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1205.5.1prot_P-littoralis_Contig1205.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1205 7235..8411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1205.5.1

>prot_P-littoralis_Contig1205.5.1 ID=prot_P-littoralis_Contig1205.5.1|Name=mRNA_P-littoralis_Contig1205.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=89bp
SSCSRPRRRCWSCNWSGHRKEDCTTKQSDFVPWFARCDGFGHKEDTCPSE
ATVLVVEPPVSEEDLAVEAQAFAATETATAPYRRRVGV*
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mRNA from alignment at P-littoralis_Contig1205:7235..8683+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1205.5.1 ID=mRNA_P-littoralis_Contig1205.5.1|Name=mRNA_P-littoralis_Contig1205.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1449bp|location=Sequence derived from alignment at P-littoralis_Contig1205:7235..8683+ (Pylaiella littoralis U1_48)
AGCAGCTGCAGTAGACCTCGCCGCCGCTGTTGGAGCTGCAACTGGAGTGG
TCACCGCAAGGAGGACTGCACGACGAAACAGAGCGATTTTGTTCCCTGGT
TCGCCAGGTGCGATGGTTTTGGACACAAGGAGGACACGTGCCCATCAGAG
GCGACGGTGCTGGTGGTGGAGCCGCCGGTATCCGAAGAAGACCTCGCCGT
AGAAGCTCAGGCGTTTGCGGCAACAGAAACAGGCGAGTGCAGTGTGATGA
TTGGTGACGAAGTCGGGGGTGGGGCGTTGGACAAGCAGAGTATCGCTGAC
AGCGCGGCTCGCTGACAGCGCGGCAGTTCCACGAGTGCCACGGGTGCTCA
ACGGCGAAAGGGCTGAGGATACCCATCGCGAGATAGACACACATCAGAGC
AGTCAAGAAGCTTCAAAGAGTTTTTGCCGATCTAAGTGGACGGATGACCG
TACAGAGTATCGGGGGGAAGCGGTATACAATCATTGTGCGGGGCGACTGC
ACCCGGTTCACGCGCGCGTTTTTTCTGAGACAGAAATCGGACGCAGCCAG
CGCGTTCGAATCCTTCCTAGCGGAGGTGCGGGCAGACGGCGCCCCATCCG
CTGTCATGGCCGTTCGATCAGGCAACGGGGGAGAGTTTTTCGGTGGAGAT
TTCGGGAAACTTTGCCGTCAACGTGGTATCAAGCAAGGGTTTACACCAGC
AGACAGGCCCACCTGCAACAGGGAAGCCGAACGAGCATTGGCACTGATCA
ACGACGCCGCCCTTGCCGCTCTCATTCAAGCCACTGAACTGTACGCGGAC
GCTCCAAGCTACACATCCTTGTGGGCCGAAGCAGTGTCGTGGGCGTGCCA
CGCCCTTAATTGCACCGCAACCACGGCCAATCCCGGGGACAAATCACCGT
ACGAGATGTGGCATGGGTTCCCACCCTCTCATGGGGCGGTGCGGCCGTTC
CTCAAGCCAGCCGTCTGCAGAGTAAAGCGAGACAACAAGTCGCAGCCACA
AGCACAGGACTGCTTCTACGTAGGACCCGGCGTCGACCACCCCCGTGACT
GCATGCGGCTAATCACTGCCAACCGCTCGATACTGACCACCCGCAACGTC
ACCTGGCGACACGTACCCACTGCCCCTCCTGTGCCCCCGCAGCAACCGCC
CCCTATCGCCGAAGAGTGGGAGTCTGACAGCGGGGGAGGGCGAGAGTGGT
AAACGCGCACCAAGTCAAGGAGAAGGGAGGGTGGAAGGCTTGGACAAGGA
GTGTTCCACCCTCGACGTGACAAGAAGCGGGATTTCCTGAAGTCTTAATC
GAAAGTACCCTTTAGTGGGTGCTACAGTAGAAGCAAGCACATAAACGTTT
GTTTCCACTTCATCCTCGATTACTTCCCCGGTCAGGGAAGATCAGCGTGA
AGTACCGGTATGTTGTGAAGTCTGCTGAGCAGCACGCTGATATTCTCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1205:7235..8683+

>mRNA_P-littoralis_Contig1205.5.1 ID=mRNA_P-littoralis_Contig1205.5.1|Name=mRNA_P-littoralis_Contig1205.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=267bp|location=Sequence derived from alignment at P-littoralis_Contig1205:7235..8683+ (Pylaiella littoralis U1_48)
AGCAGCTGCAGTAGACCTCGCCGCCGCTGTTGGAGCTGCAACTGGAGTGG
TCACCGCAAGGAGGACTGCACGACGAAACAGAGCGATTTTGTTCCCTGGT
TCGCCAGGTGCGATGGTTTTGGACACAAGGAGGACACGTGCCCATCAGAG
GCGACGGTGCTGGTGGTGGAGCCGCCGGTATCCGAAGAAGACCTCGCCGT
AGAAGCTCAGGCGTTTGCGGCAACAGAAACAGCAACCGCCCCCTATCGCC
GAAGAGTGGGAGTCTGA
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