mRNA_P-littoralis_Contig880.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig880.3.1
Unique NamemRNA_P-littoralis_Contig880.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig880.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig880contigP-littoralis_Contig880:13477..14838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size231
Hectar predicted targeting categoryother localisation
Exons2
Cds size231
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791769.557975-CDS-P-littoralis_Contig880:13476..135311680791769.557975-CDS-P-littoralis_Contig880:13476..13531Pylaiella littoralis U1_48CDSP-littoralis_Contig880 13477..13531 +
1680791769.5698247-CDS-P-littoralis_Contig880:14662..148381680791769.5698247-CDS-P-littoralis_Contig880:14662..14838Pylaiella littoralis U1_48CDSP-littoralis_Contig880 14663..14838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig880.3.1prot_P-littoralis_Contig880.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig880 13477..14838 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig880.3.1

>prot_P-littoralis_Contig880.3.1 ID=prot_P-littoralis_Contig880.3.1|Name=mRNA_P-littoralis_Contig880.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=77bp
RLSGNSEVRPRHRRGHSTGYTADPATKNPFIIQPQGWEFGSGGSGTTTTT
IGSGTASTTSSSASAALAAAAAAAGGG
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mRNA from alignment at P-littoralis_Contig880:13477..14838+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig880.3.1 ID=mRNA_P-littoralis_Contig880.3.1|Name=mRNA_P-littoralis_Contig880.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1362bp|location=Sequence derived from alignment at P-littoralis_Contig880:13477..14838+ (Pylaiella littoralis U1_48)
AGACTTTCGGGGAACAGTGAGGTCCGACCGCGTCATCGCAGAGGGCACTC
GACAGGTGGGTGGAATACAGGTGTTGTTGTTGGTGGAATACAGGTGTTGT
TGCAGCTATCATATCATATGATGGGCGTGTTATCGGTACTGCTGTACCCT
GAGGGAATGTTTTTTCGAAGGGGACCGGCCACTGACCAGTTGATGGTTTG
ATGAGCCAGCCTTCGTCCATCATATATACATATGATATGTCTCGTGCGTA
GTGCACCCGAATGTTCGATTGCGATTTTCGCGCCAGCATGACGCCTCGAG
AGGGAGGGAGGGAGAGAGAGAGAGGAGGGTAGGAGAGAGCGGCTACTACT
GTAGTCATGGATGCATAATATTGCCACCCCCTCTCAAGTTCGAGAGGTTT
AGAGGTAGTGTTTCACGTTTCATTCATTATGCCACTGCTGTTGTCTTGGG
TTTTTGAATTCGAGACTTTTCTCAGACAGCAATGGTTGAGCGCTTGGGGA
GTGGTCGGGGTACGAAGCCGTGTAAATCATGTTGAATATGACGTCGTTCC
TGGCACAAAGCGATATGATATGTAGAGAGATTTACGCCTCTCTTTTTTTT
TTTGCTCGTTTTTTTTTGCCAAAGTGAAACGCGGCTGGTTTCGGTGCTTG
ATTGATCAACTGTTCGAAGTTACAGTAGCACGGAAGGAACTCATTTTCTC
GTTTCAGTTTTTCATGCAACAGCAGCGGGATCACATGATGCAAACGATTG
ATTTTCGATGCTGCTACCCGTACGTTGACTTCATTCAGCCCAACAACAAG
CGACACCGACATCGACTAAGTATCTATGCTCAACCATGCTGTTCGTGAGT
ATCAACAGAGAGAAGGGAAAGCTGAACCCGACTCGCATTAGAAACCAAAG
GCAAGTACCGCAGGAGGAAGGGTGCGGGCAGTAAAAAAAAATAAAAATAA
AAAAAGGTCGTGTGTGACTTTCCTTCTGTGTGACCCCGGCTGGTTCACCC
ACTTCATACCGAAGGTTGTAGACTGGATGGTGCCCATAATAAATGAAATT
ACAACACACACACGTACTAACCCCCCCCCACCCGCCCATACCGTACCCAG
TTGTAATGCTCAGCAACAATAATAACCCCCCCCCCCCTCCTCCCTCCCCA
CTTTTTTCTCCCCCCCGTTGACCCGGTTGCTTGTAGGATATACCGCCGAC
CCCGCGACAAAAAACCCCTTTATAATTCAGCCTCAAGGCTGGGAATTTGG
CAGCGGCGGCAGCGGCACTACCACCACCACCATCGGAAGTGGGACGGCAT
CCACCACTTCGTCCAGCGCTAGCGCTGCTCTGGCCGCTGCGGCCGCCGCT
GCCGGTGGCGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig880:13477..14838+

>mRNA_P-littoralis_Contig880.3.1 ID=mRNA_P-littoralis_Contig880.3.1|Name=mRNA_P-littoralis_Contig880.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=231bp|location=Sequence derived from alignment at P-littoralis_Contig880:13477..14838+ (Pylaiella littoralis U1_48)
AGACTTTCGGGGAACAGTGAGGTCCGACCGCGTCATCGCAGAGGGCACTC
GACAGGATATACCGCCGACCCCGCGACAAAAAACCCCTTTATAATTCAGC
CTCAAGGCTGGGAATTTGGCAGCGGCGGCAGCGGCACTACCACCACCACC
ATCGGAAGTGGGACGGCATCCACCACTTCGTCCAGCGCTAGCGCTGCTCT
GGCCGCTGCGGCCGCCGCTGCCGGTGGCGGG
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