mRNA_P-littoralis_Contig880.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig880.1.1
Unique NamemRNA_P-littoralis_Contig880.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig880.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig880contigP-littoralis_Contig880:9711..13290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size534
Hectar predicted targeting categoryother localisation
Exons3
Cds size534
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791769.4946504-CDS-P-littoralis_Contig880:9710..99271680791769.4946504-CDS-P-littoralis_Contig880:9710..9927Pylaiella littoralis U1_48CDSP-littoralis_Contig880 9711..9927 +
1680791769.5100942-CDS-P-littoralis_Contig880:10617..108411680791769.5100942-CDS-P-littoralis_Contig880:10617..10841Pylaiella littoralis U1_48CDSP-littoralis_Contig880 10618..10841 +
1680791769.5235512-CDS-P-littoralis_Contig880:13197..132901680791769.5235512-CDS-P-littoralis_Contig880:13197..13290Pylaiella littoralis U1_48CDSP-littoralis_Contig880 13198..13290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig880.1.1prot_P-littoralis_Contig880.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig880 9711..13290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig880.1.1

>prot_P-littoralis_Contig880.1.1 ID=prot_P-littoralis_Contig880.1.1|Name=mRNA_P-littoralis_Contig880.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=178bp
QEVPAPESSVGREEREREMSAAAVARPRPPSPPDTRDVGDGDANGFGITA
VNGSTGANCAASDGQNAFASGKDDEKRKATTTTFAVTPLQRRYANDHDKW
TEGREDEQRGGGGGGSSGGGGGGGGGGNGRSPENRFSSWASFGSVTQGTG
HCCCDCVPLSRGLCGGGSDVAAETGRGG
back to top

mRNA from alignment at P-littoralis_Contig880:9711..13290+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig880.1.1 ID=mRNA_P-littoralis_Contig880.1.1|Name=mRNA_P-littoralis_Contig880.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3580bp|location=Sequence derived from alignment at P-littoralis_Contig880:9711..13290+ (Pylaiella littoralis U1_48)
CAGGAAGTACCAGCACCCGAATCTTCCGTCGGTAGAGAGGAGAGAGAGAG
GGAGATGTCTGCCGCGGCCGTAGCAAGACCAAGACCGCCCTCCCCACCAG
ACACGAGAGATGTCGGCGATGGTGATGCCAATGGTTTTGGTATCACTGCC
GTCAATGGTTCCACCGGCGCTAATTGCGCTGCCAGCGACGGTCAAAACGC
ATTCGCAAGCGGGAAAGGTGTGTAAAGAGTGGGGGGGGAGGGGAACCCCC
GGAGAATGGTGAGCTAGGAATCGAACACCCAAAGCCGTTATTTTGTTCGT
GATAGGGGCTAATCCTAAACTGACTTATGTATAGGACAGCCCTTGTCACG
AACAGGAGGGGGGGGGGGGCGAGGCAGTTTCATTCGCTGCTGCCTACGTT
AGTCATTGAGCCATCCCACCACACACGTCTTCTAGGTGGAGCACCACCGT
TCCTACTACTCCTCCGTTCACGTGGTATATACTCCGTCCGTTTGGTCGCT
CTCGTCGTTCGTGTCGTGTTTTACATTGACAGGGTGGCGGGCTGGGGAGC
GGGCTCTCTTTTTTTTTTGCCTCGAGTAGTTTGAGTCTCCTTAGCATTGT
TGTTGTTGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCA
CGAGTGCAGAATCCCCCTCCCCTTCCTCTGTGCACGAGTGAGTCGGACGC
TCGTTTCCTCGGGCCTTTTTTTTCTTTTCATTTGTTTTTCTGTCTTTTTT
TTTCTATTCATTTTGAATGATGCTTGGATGAAGGTTTTAGCCTCTTTTGT
TTGGCTCTCCTTCCACGGGCCAAGTTAGTTTACACCCATCACTCCTTTAC
TGTACCGCTGACGTTGGACGTGTTATATATCTTTTATTTTACCTTTTTTT
TGTTCAGATGATGAGAAGAGGAAGGCGACGACGACGACATTTGCGGTGAC
CCCCCTGCAGAGGCGGTACGCGAACGACCACGACAAGTGGACGGAGGGAC
GGGAAGATGAACAACGCGGCGGGGGAGGTGGCGGCAGCAGCGGCGGTGGT
GGTGGCGGCGGCGGCGGCGGCAATGGGAGAAGCCCAGAAAACCGGTTTAG
CTCCTGGGCTAGCTTCGGTAGCGTGACGCAGGCGAGACCGACAGGAATGG
GGCTGCCTGCGTGTAGTAGATCGATGGCGGAGGTGGGATAATTGACTTTA
CCGCTCATCGTCATGCTGATGTGTGAATCGTGTGTGTGTGGGTGTGTGTC
TCTGTGCATGTCAGTGTGTCTGCGATTCTCTGCTTCTGTGCGCGTTGTGG
TGTCCGTGTGGGTGTCCTTTGTGTGTGTCGGTGTGTTTCTGCAGGTTCGT
GTGCGTCTGTGTGCAAAATGCTCTCGTACGCGCCCTAACACACGGTGCGG
GACTTATATTTCAATCACAACGCAAACATAGGACAGAGGCGCGTAACAAA
CATGCCTGCTGACTTGCCTTGTGTGTACACTTCTGTATAAATATATAAAT
ATAGCGTGTGCCGCCTCTTCATGGTTGGATACGCGTTCCCACTTTCGCTT
ATCGTAAGTGATATCCTCCTCGGTTACCGACGTAGGGATGGCATGATTGA
TGGGCGGATGGATGTTTCCGTGTAAAAATGGAGCACAAACAAAGAACCCC
GAAGCAGTTACTTCCCTCCTTGTGTTGGTGTACTGCTGTGCATCCAGCAG
CAAAGCAAGCACACCTCGTGATGCTGTGTTTTTATCTCGCTGGCTTCTTA
CTTTCTCCCGCGTGTCGTTCGTACGCATCCACCCACACACCCACCCACCC
ACCCACCCCCTCACGTACCTGACTTGTCTCGCTTTTGACTTTCTGTTCCC
CATGACTTTTTTTTGAAGGGCAAACGCCAAAAAGCGGTATACCGCCATGG
TTCCGCGCCACAAAGCGGTACACCAAATTACACCTTGGCATTTGAGCCCC
GTTCGCGTCGCTGATTGGCCAACTAAGCTTCGTATCGCTTTCTGGCACCA
GTAACCGGCGGTATATCACTTTTGGGCCTCTCAGGTCGGCCTTCACCGCT
TTTTGGCGTAACCCACACCGCTTTCTGGCGTGATATTCCGCAGACCATTC
ATTCATTCATTCGCCGAACAGCCCTCCCCACTTTCATATCACACGTCACA
CCATCGATCAACCAAGGGAATGGATCAACCAAGAAAGCCACGGCACCTCG
TGAGCCCCACGTCGTACCCCCACACCCCACACCGATCCCTGCAGGATGGT
TGGTACCGATATGCGTGACAGAAGACCAAATCGTTCACCAATTATACGAC
TACAAGGAAGGGGAATGCAACGCTCGAAAACGAAGTGTCAAAAATTGTCT
ACTACACTGAAATCGATCCCATCCAGTCCTACCAATCAATGCGCAAAAGA
TGTACAAGTTGTAGGCAATTGCATGTAGGGTTGTTGTTGTTGTTGTTGAT
TCTCACATTAGCTCACTACCGCCGCAGTCTAGCCCGTGGTCACAAACCAG
GCACATACCCGGAAAAATCGGGCATTATTTCCGGGCAATTGAATGATACT
TGGAATAGACAACATGGATGGGCAAACACACCGGAACCAGGAATCCAGCA
TGCTACCTCTGCCGGCTCGTAATAGCGGCCGGGCTATCCTTCTACAGGGT
GGAAGAATGTAAACCCCGAAGAGTCTGTCGAATCAGCGGTGCGTCATTAA
TGTGTGCAGCAGGTGTTTGCCCTCATGTGCTTAAGACGCCGCCAGGGCGG
TGTGGCGATCGCGTGGGCCATAACTGGCACGTATTGATGTGTGCGCGTGT
ACGCGTGCCATCTTTGCGATCATAAAGGTGCCTGGGGTCACGGCTTGACA
GCAGTGCCTCGGTATTGGTGATCGATTTGGTATTCTGTCACGCACATCGG
CACCAACCATCCTGCAGGGATCGGTGTGGGGTGTGGGGGTACGCGTGGAG
CCGTATGGCGTTCTTGGTTGATCCATTCCCTTGGTTGATCGATGGTGTGA
CGTGTGATATGAAAGTGGGGAGGGCTATTCGGCGAATGAATGAATGAATG
GTCTGCGGAACATCACGCCAGAAAGCGGTGTGGGTTACGCCAAAAAGCGG
CGAAGGCCGACCTGAGAGGCCCAAAAGTGATATACCGCCGGTTACTGGTG
CCAGAAAGCGATACGAGGCTTAGTTGGCCAATCAGTGACGCGAACGGGGC
TCAAATGCCAAGGTGTAATTTGGTGTACCGCTTTGTGGCGCGGAACCATG
GCGGTATACCGCTTTTTGGCGTTTGCCATTTTTTTAATCGTGGGTGGTGG
GTTTTTGTGTACAAGAACGATCGGTGTTGCCTTGCTCATCACTCGCACAA
ACAGCGGTAGTATGATATCACTCCGTCCCGTTTTTCCGTTTTTCTGTTTT
TAGTTTTTAGTTTTTCGCCTCTCGGTTTTCGCTTTTCGTTCTTCATTTTT
CATTTTTCGTTCACCGTTTTTTTTCGAAACAAAAAAGGGAACCGGCCACT
GCTGCTGCGATTGCGTTCCCCTGTCGCGGGGGCTCTGTGGCGGCGGCAGT
GATGTGGCTGCGGAGACTGGGCGCGGGGGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig880:9711..13290+

>mRNA_P-littoralis_Contig880.1.1 ID=mRNA_P-littoralis_Contig880.1.1|Name=mRNA_P-littoralis_Contig880.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=534bp|location=Sequence derived from alignment at P-littoralis_Contig880:9711..13290+ (Pylaiella littoralis U1_48)
CAGGAAGTACCAGCACCCGAATCTTCCGTCGGTAGAGAGGAGAGAGAGAG
GGAGATGTCTGCCGCGGCCGTAGCAAGACCAAGACCGCCCTCCCCACCAG
ACACGAGAGATGTCGGCGATGGTGATGCCAATGGTTTTGGTATCACTGCC
GTCAATGGTTCCACCGGCGCTAATTGCGCTGCCAGCGACGGTCAAAACGC
ATTCGCAAGCGGGAAAGATGATGAGAAGAGGAAGGCGACGACGACGACAT
TTGCGGTGACCCCCCTGCAGAGGCGGTACGCGAACGACCACGACAAGTGG
ACGGAGGGACGGGAAGATGAACAACGCGGCGGGGGAGGTGGCGGCAGCAG
CGGCGGTGGTGGTGGCGGCGGCGGCGGCGGCAATGGGAGAAGCCCAGAAA
ACCGGTTTAGCTCCTGGGCTAGCTTCGGTAGCGTGACGCAGGGAACCGGC
CACTGCTGCTGCGATTGCGTTCCCCTGTCGCGGGGGCTCTGTGGCGGCGG
CAGTGATGTGGCTGCGGAGACTGGGCGCGGGGGG
back to top