mRNA_P-littoralis_Contig1205.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1205.4.1
Unique NamemRNA_P-littoralis_Contig1205.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1205.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1205contigP-littoralis_Contig1205:5474..7012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1539
Hectar predicted targeting categoryother localisation
Exons1
Cds size447
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789516.8907006-UTR-P-littoralis_Contig1205:5473..64441680789516.8907006-UTR-P-littoralis_Contig1205:5473..6444Pylaiella littoralis U1_48UTRP-littoralis_Contig1205 5474..6444 +
1680789516.910073-UTR-P-littoralis_Contig1205:6891..70121680789516.910073-UTR-P-littoralis_Contig1205:6891..7012Pylaiella littoralis U1_48UTRP-littoralis_Contig1205 6892..7012 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789516.8993952-CDS-P-littoralis_Contig1205:6444..68911680789516.8993952-CDS-P-littoralis_Contig1205:6444..6891Pylaiella littoralis U1_48CDSP-littoralis_Contig1205 6445..6891 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1205.4.1prot_P-littoralis_Contig1205.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1205 6445..6891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1205.4.1

>prot_P-littoralis_Contig1205.4.1 ID=prot_P-littoralis_Contig1205.4.1|Name=mRNA_P-littoralis_Contig1205.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=149bp
MLDISDHFTGRETRALPVGDPLKQKTGLLREGFSHDEISGAYLAWNFLDA
ALQSAADRRILKRCKSPREAFGQLESWHDPESEVTLQNLYDQFHDFSIPP
RSNPIAALHALEDINNRLEEKSMVRIPDSFLHARCPTSTPMPRKYCSW*
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mRNA from alignment at P-littoralis_Contig1205:5474..7012+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1205.4.1 ID=mRNA_P-littoralis_Contig1205.4.1|Name=mRNA_P-littoralis_Contig1205.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1539bp|location=Sequence derived from alignment at P-littoralis_Contig1205:5474..7012+ (Pylaiella littoralis U1_48)
CACCCGCTGACCGCAGTACGTATTGTGGACGATCGTGCCGACGCATGAGC
CCTTACTCCTCTTCTTAATGAACTTGTTAACCCCGACTGATTGGGGGTTT
GAGGATACTCCGGGCACATCTTTATCCCTAACTTAGGCATTTGGCCCGAC
TTTTTTTGCCCCGTGCAGCATAAACGCACAATCAACATTTTCATTCTGAA
GCTTCAAGACTTGGAACTTGGGATTGGTGCACGCGGGACTGTGATTAATA
TCCAATCATCTACACAAGTACCGTGGCCGGGAGGCGTTTGGCGTCGTCAG
GGGGGTTCATCAACTCAGAACTCGCTCCGCTGCACGAGGCAGTGGAGCTC
TCGCCCGAGACTACGAACACACAAGTGATGTCCTTCAAAGAAGCTTGAGA
CGCAATGGCGAGCCGCGCTGACGAGGTAACCCTAGACAGGAGAAAACTCG
AGAGCGACGTTGTTCAGAAAATGAAAGCTGAAATTTCTGAAACGGGAAAA
CAACTACATCAGCTGACTGACTGATGCAGCAGCTGCTGCAGGCCAAACCG
GCAAGGGGAGGCCAGCAAGGAGAGGAGCCAAGAGGCCTCGGCAAGAAAGC
TGCTGACAACAACAGCAGTAGCGACACCAGTGGGGCGTCGCGGCAAGAGA
TGCCTGCTGGCAATGGTCAAGGTGCTGGAGCAGCTACAACAGCAGCAAGC
GGAGGGTGGTCCCACGAAGGCAGCAGCGCCCGTGCGGATTCACGACCTGC
TGAAGATTCGGGCCGCAGACCAGAGGCTCCTGCTGGCGTGGGCCCGATGA
CCAGAGGGCGGCGCGCATATCCCAGAGGTATAGCCGCAGGTGGCGATGGG
GATGGTTTCACTGGTGGCCATGACTTCAAGGGCCAACCCACCCGTGTCGT
GCCTCCAATTTTGAAGGTATATAGACAAACGTGGCTTCCAAACATTTAAA
CATGAGTTTCTCAGAGCCAACATGCTAGACATATCAGATCACTTCACAGG
CCGGGAGACAAGAGCGTTACCCGTGGGAGACCCGCTCAAGCAGAAAACAG
GGCTGTTGCGAGAGGGCTTCTCACACGATGAGATCAGTGGGGCCTACCTG
GCGTGGAATTTCCTAGACGCGGCGCTCCAGAGCGCAGCGGATCGAAGAAT
ACTCAAGCGATGCAAATCTCCTAGGGAAGCATTCGGGCAACTCGAGAGCT
GGCACGACCCCGAGAGCGAGGTGACATTACAAAATCTGTACGACCAGTTC
CATGATTTTTCAATCCCACCACGCAGCAACCCCATCGCTGCACTTCATGC
ACTTGAAGACATCAATAATAGGTTGGAGGAGAAGAGCATGGTAAGAATTC
CTGACTCGTTCCTGCACGCGCGTTGCCCGACGAGTACGCCCATGCCAAGG
AAATACTGCAGTTGGTGAAGAACTGGGAACGGGGCGAGATCATCCGCGTG
GTGGACACGCGGTTCTCGAACCTGCCTCAGAAGAAGGGGCCGCCGCGGTC
GTCCCGGCTGCCCAAGCAGGCGTTCGTACCGAGCGAGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1205:5474..7012+

>mRNA_P-littoralis_Contig1205.4.1 ID=mRNA_P-littoralis_Contig1205.4.1|Name=mRNA_P-littoralis_Contig1205.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=447bp|location=Sequence derived from alignment at P-littoralis_Contig1205:5474..7012+ (Pylaiella littoralis U1_48)
ATGCTAGACATATCAGATCACTTCACAGGCCGGGAGACAAGAGCGTTACC
CGTGGGAGACCCGCTCAAGCAGAAAACAGGGCTGTTGCGAGAGGGCTTCT
CACACGATGAGATCAGTGGGGCCTACCTGGCGTGGAATTTCCTAGACGCG
GCGCTCCAGAGCGCAGCGGATCGAAGAATACTCAAGCGATGCAAATCTCC
TAGGGAAGCATTCGGGCAACTCGAGAGCTGGCACGACCCCGAGAGCGAGG
TGACATTACAAAATCTGTACGACCAGTTCCATGATTTTTCAATCCCACCA
CGCAGCAACCCCATCGCTGCACTTCATGCACTTGAAGACATCAATAATAG
GTTGGAGGAGAAGAGCATGGTAAGAATTCCTGACTCGTTCCTGCACGCGC
GTTGCCCGACGAGTACGCCCATGCCAAGGAAATACTGCAGTTGGTGA
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