prot_P-littoralis_Contig88.87.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig88.87.2
Unique Nameprot_P-littoralis_Contig88.87.2
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length396
Homology
BLAST of mRNA_P-littoralis_Contig88.87.2 vs. uniprot
Match: A0A6H5KVT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVT8_9PHAE)

HSP 1 Score: 269 bits (688), Expect = 5.780e-84
Identity = 221/358 (61.73%), Postives = 241/358 (67.32%), Query Frame = 0
Query:    1 MDSASFAVSAGEALVASIGDMTSSSTNKFRDVSRKVTLARLLDEKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLANRGGLEALRDLRDLSSIVSEVERRAAALREAIESHRRDNIARREMSETTRQQTAQLAATLSALPEHLPHAA--TPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTAGGADSNAATVAYPVVRSAGGIRRGEADAAASGLTEVPVL---ELVTVGELNGVPRSTRARLTIEQVNSAVTEIQKAVERRHAFLSKPRKKMSEKQRGRLEELLRQEVPAHGGEPFIAEPDLRALPAFKKGEV 353
            MD +S A  AG ALVAS+G+MT+S+TNK +DVSRKV LARLLD+KS    XXXXX                                 XXXXXXXXX                      N G LEALRDLR+LSSIVSEVERRAAALREAI++HRRDN ARR MS+ TRQQTAQLAATLSALPEHLPHAA   P           XXXXXXXXXXXXXXXXXX          A  A P    AGG R  E + A +G T +P +   ELVTVGELNGVPRSTR RLTIEQVN+AVT+IQKA+ERRHAFLSKPRKKMSEKQRGRLEELL QEVPAHGG PFIAEPDLRALP+FKKGE+
Sbjct:    1 MDQSSVAA-AGAALVASVGNMTTSATNKLQDVSRKVALARLLDDKSSTSTXXXXXSDKAVDGKENSSVNSTASRDLAGRKVLSESGNSXXXXXXXXXGAGH-----------------TNHGDLEALRDLRNLSSIVSEVERRAAALREAIDAHRRDNEARRAMSDATRQQTAQLAATLSALPEHLPHAAEEVPAAREAAVMANAXXXXXXXXXXXXXXXXXXXXXXXXXXAKAKAAEP----AGGGRDAEPNVA-TGRTVMPKVVPVELVTVGELNGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFKKGEM 335          
BLAST of mRNA_P-littoralis_Contig88.87.2 vs. uniprot
Match: D8LPM8_ECTSI (Similar to C18orf24 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM8_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 5.200e-45
Identity = 83/97 (85.57%), Postives = 91/97 (93.81%), Query Frame = 0
Query:  257 LTEVPVLELVTVGELNGVPRSTRARLTIEQVNSAVTEIQKAVERRHAFLSKPRKKMSEKQRGRLEELLRQEVPAHGGEPFIAEPDLRALPAFKKGEV 353
            + EV  +ELVTVGEL+GVPRSTR RLTIEQVN+AVT+IQKA+ERRHAFLSKPRKKMSEKQRGRLEELL QEVPAHGG PFIAEPDLRALP+FKKGE+
Sbjct:    1 MPEVVPVELVTVGELDGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFKKGEM 97          
BLAST of mRNA_P-littoralis_Contig88.87.2 vs. uniprot
Match: A0A7L1H037_9PICI (Spindle and kinetochore-associated protein 1 (Fragment) n=1 Tax=Indicator maculatus TaxID=545262 RepID=A0A7L1H037_9PICI)

HSP 1 Score: 57.4 bits (137), Expect = 9.990e-6
Identity = 33/85 (38.82%), Postives = 44/85 (51.76%), Query Frame = 0
Query:  265 LVTVGELNGVPRSTRARLTIEQVNSAVTEIQKAVERRHAFLSKPRKKMSEKQRGRLEELLRQEVPAHGGEPFIAEPDLRALPAFK 349
            L+TV E   VP   + R+T EQ+N+ V EI KAVER++  L +P K M+   R        +E     GE FI E D+R     K
Sbjct:  136 LITVEEFKDVPAYMKGRITYEQINNTVNEINKAVERKYKILQQPLKSMNMATRNHYHRFKEEETKDTKGEFFIVEADMREFTQVK 220          
BLAST of mRNA_P-littoralis_Contig88.87.2 vs. uniprot
Match: A0A7K6LCH4_9CORV (Spindle and kinetochore-associated protein 1 (Fragment) n=1 Tax=Falcunculus frontatus TaxID=254539 RepID=A0A7K6LCH4_9CORV)

HSP 1 Score: 52.8 bits (125), Expect = 8.540e-5
Identity = 30/85 (35.29%), Postives = 46/85 (54.12%), Query Frame = 0
Query:  265 LVTVGELNGVPRSTRARLTIEQVNSAVTEIQKAVERRHAFLSKPRKKMSEKQRGRLEELLRQEVPAHGGEPFIAEPDLRALPAFK 349
            L+T+ E   VP   + RLT +Q+N+ V E+ KAV  ++  + +P K MS   R   ++ + QE  A  G  FI E D++A    K
Sbjct:   31 LITMEEFESVPAYMKGRLTYDQINAVVQEMNKAVAAKYKIMYQPLKNMSIPDRNLYDKFMEQETNATRGLFFIVEADIKAFTQLK 115          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig88.87.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KVT8_9PHAE5.780e-8461.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPM8_ECTSI5.200e-4585.57Similar to C18orf24 protein n=1 Tax=Ectocarpus sil... [more]
A0A7L1H037_9PICI9.990e-638.82Spindle and kinetochore-associated protein 1 (Frag... [more]
A0A7K6LCH4_9CORV8.540e-535.29Spindle and kinetochore-associated protein 1 (Frag... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 130..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 187..201
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 179..205
IPR009829Spindle and kinetochore-associated protein 1PFAMPF07160SKA1coord: 128..349
e-value: 1.3E-21
score: 77.6
IPR009829Spindle and kinetochore-associated protein 1PANTHERPTHR28573SPINDLE AND KINETOCHORE-ASSOCIATED PROTEIN 1coord: 127..349
IPR042031SKA1 microtubule binding domainGENE3D1.10.10.1890coord: 257..357
e-value: 1.1E-18
score: 69.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig88contigP-littoralis_Contig88:360021..362798 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig88.87.2mRNA_P-littoralis_Contig88.87.2Pylaiella littoralis U1_48mRNAP-littoralis_Contig88 359973..363022 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig88.87.2 ID=prot_P-littoralis_Contig88.87.2|Name=mRNA_P-littoralis_Contig88.87.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=396bp
MDSASFAVSAGEALVASIGDMTSSSTNKFRDVSRKVTLARLLDEKSSSSS
SSSSDKAKSSDDDKENSRTTTNSSGSGNAILSERCSSSSSSSSNNNNNSN
DNSRNNSSCIGGGTTTLLANRGGLEALRDLRDLSSIVSEVERRAAALREA
IESHRRDNIARREMSETTRQQTAQLAATLSALPEHLPHAATPPPPPPPTA
AAATSQKTAAAAVAVAAAAAVPTAGGADSNAATVAYPVVRSAGGIRRGEA
DAAASGLTEVPVLELVTVGELNGVPRSTRARLTIEQVNSAVTEIQKAVER
RHAFLSKPRKKMSEKQRGRLEELLRQEVPAHGGEPFIAEPDLRALPAFKK
GEVREQLEGGAWRGHDDVRREGGVIKSQPTAPVYVAFRCILLHVL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009829SKA1
IPR042031SKA1-MBD