mRNA_P-littoralis_Contig88.87.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig88.87.2
Unique NamemRNA_P-littoralis_Contig88.87.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig88.87.2 vs. uniprot
Match: A0A6H5KVT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVT8_9PHAE)

HSP 1 Score: 270 bits (690), Expect = 4.600e-83
Identity = 221/358 (61.73%), Postives = 241/358 (67.32%), Query Frame = 1 
Query:   49 MDSASFAVSAGEALVASIGDMTSSSTNKFRDVSRKVTLARLLDEKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLANRGGLEALRDLRDLSSIVSEVERRAAALREAIESHRRDNIARREMSETTRQQTAQLAATLSALPEHLPHAA--TPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTAGGADSNAATVAYPVVRSAGGIRRGEADAAASGLTEVPVL---ELVTVGELNGVPRSTRARLTIEQVNSAVTEIQKAVERRHAFLSKPRKKMSEKQRGRLEELLRQEVPAHGGEPFIAEPDLRALPAFKKGEV 1107
            MD +S A  AG ALVAS+G+MT+S+TNK +DVSRKV LARLLD+KS    XXXXX                                 XXXXXXXXX                      N G LEALRDLR+LSSIVSEVERRAAALREAI++HRRDN ARR MS+ TRQQTAQLAATLSALPEHLPHAA   P           XXXXXXXXXXXXXXXXXX          A  A P    AGG R  E + A +G T +P +   ELVTVGELNGVPRSTR RLTIEQVN+AVT+IQKA+ERRHAFLSKPRKKMSEKQRGRLEELL QEVPAHGG PFIAEPDLRALP+FKKGE+
Sbjct:    1 MDQSSVAA-AGAALVASVGNMTTSATNKLQDVSRKVALARLLDDKSSTSTXXXXXSDKAVDGKENSSVNSTASRDLAGRKVLSESGNSXXXXXXXXXGAGH-----------------TNHGDLEALRDLRNLSSIVSEVERRAAALREAIDAHRRDNEARRAMSDATRQQTAQLAATLSALPEHLPHAAEEVPAAREAAVMANAXXXXXXXXXXXXXXXXXXXXXXXXXXAKAKAAEP----AGGGRDAEPNVA-TGRTVMPKVVPVELVTVGELNGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFKKGEM 335
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BLAST of mRNA_P-littoralis_Contig88.87.2 vs. uniprot
Match: D8LPM8_ECTSI (Similar to C18orf24 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM8_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 3.530e-44
Identity = 83/97 (85.57%), Postives = 91/97 (93.81%), Query Frame = 1 
Query:  817 LTEVPVLELVTVGELNGVPRSTRARLTIEQVNSAVTEIQKAVERRHAFLSKPRKKMSEKQRGRLEELLRQEVPAHGGEPFIAEPDLRALPAFKKGEV 1107
            + EV  +ELVTVGEL+GVPRSTR RLTIEQVN+AVT+IQKA+ERRHAFLSKPRKKMSEKQRGRLEELL QEVPAHGG PFIAEPDLRALP+FKKGE+
Sbjct:    1 MPEVVPVELVTVGELDGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFKKGEM 97
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BLAST of mRNA_P-littoralis_Contig88.87.2 vs. uniprot
Match: A0A7L1H037_9PICI (Spindle and kinetochore-associated protein 1 (Fragment) n=1 Tax=Indicator maculatus TaxID=545262 RepID=A0A7L1H037_9PICI)

HSP 1 Score: 57.4 bits (137), Expect = 1.370e-5
Identity = 33/85 (38.82%), Postives = 44/85 (51.76%), Query Frame = 1 
Query:  841 LVTVGELNGVPRSTRARLTIEQVNSAVTEIQKAVERRHAFLSKPRKKMSEKQRGRLEELLRQEVPAHGGEPFIAEPDLRALPAFK 1095
            L+TV E   VP   + R+T EQ+N+ V EI KAVER++  L +P K M+   R        +E     GE FI E D+R     K
Sbjct:  136 LITVEEFKDVPAYMKGRITYEQINNTVNEINKAVERKYKILQQPLKSMNMATRNHYHRFKEEETKDTKGEFFIVEADMREFTQVK 220
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig88.87.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KVT8_9PHAE4.600e-8361.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPM8_ECTSI3.530e-4485.57Similar to C18orf24 protein n=1 Tax=Ectocarpus sil... [more]
A0A7L1H037_9PICI1.370e-538.82Spindle and kinetochore-associated protein 1 (Frag... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig88contigP-littoralis_Contig88:359973..363022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LPM8
Preferred nameSKA1
PFAMsSKA1
Model size1460
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000278,GO:0000775,GO:0000776,GO:0000777,GO:0000779,GO:0000793,GO:0000940,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0005874,GO:0005876,GO:0007049,GO:0007059,GO:0008017,GO:0008092,GO:0008150,GO:0009987,GO:0015630,GO:0015631,GO:0031110,GO:0032886,GO:0032991,GO:0033043,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0051128,GO:0051301,GO:0051493,GO:0065007,GO:0070507,GO:0072686,GO:0098687,GO:0099080,GO:0099081,GO:0099512,GO:0099513
Exons3
Evalue8.52e-46
EggNOG OGsKOG4832@1|root,KOG4832@2759|Eukaryota
Ec32 ortholog descriptionProtein of unknown function DUF1395
Ec32 orthologEc-06_004800.1
Descriptionmicrotubule binding
Cds size1188
COG categoryZ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791765.8492239-UTR-P-littoralis_Contig88:359972..3600201680791765.8492239-UTR-P-littoralis_Contig88:359972..360020Pylaiella littoralis U1_48UTRP-littoralis_Contig88 359973..360020 +
1680791765.9117317-UTR-P-littoralis_Contig88:362798..3630221680791765.9117317-UTR-P-littoralis_Contig88:362798..363022Pylaiella littoralis U1_48UTRP-littoralis_Contig88 362799..363022 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791765.870388-CDS-P-littoralis_Contig88:360020..3609221680791765.870388-CDS-P-littoralis_Contig88:360020..360922Pylaiella littoralis U1_48CDSP-littoralis_Contig88 360021..360922 +
1680791765.888542-CDS-P-littoralis_Contig88:361479..3616451680791765.888542-CDS-P-littoralis_Contig88:361479..361645Pylaiella littoralis U1_48CDSP-littoralis_Contig88 361480..361645 +
1680791765.899384-CDS-P-littoralis_Contig88:362678..3627981680791765.899384-CDS-P-littoralis_Contig88:362678..362798Pylaiella littoralis U1_48CDSP-littoralis_Contig88 362679..362798 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig88.87.2prot_P-littoralis_Contig88.87.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig88 360021..362798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig88.87.2

>prot_P-littoralis_Contig88.87.2 ID=prot_P-littoralis_Contig88.87.2|Name=mRNA_P-littoralis_Contig88.87.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=396bp
MDSASFAVSAGEALVASIGDMTSSSTNKFRDVSRKVTLARLLDEKSSSSS
SSSSDKAKSSDDDKENSRTTTNSSGSGNAILSERCSSSSSSSSNNNNNSN
DNSRNNSSCIGGGTTTLLANRGGLEALRDLRDLSSIVSEVERRAAALREA
IESHRRDNIARREMSETTRQQTAQLAATLSALPEHLPHAATPPPPPPPTA
AAATSQKTAAAAVAVAAAAAVPTAGGADSNAATVAYPVVRSAGGIRRGEA
DAAASGLTEVPVLELVTVGELNGVPRSTRARLTIEQVNSAVTEIQKAVER
RHAFLSKPRKKMSEKQRGRLEELLRQEVPAHGGEPFIAEPDLRALPAFKK
GEVREQLEGGAWRGHDDVRREGGVIKSQPTAPVYVAFRCILLHVL*
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mRNA from alignment at P-littoralis_Contig88:359973..363022+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig88.87.2 ID=mRNA_P-littoralis_Contig88.87.2|Name=mRNA_P-littoralis_Contig88.87.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3050bp|location=Sequence derived from alignment at P-littoralis_Contig88:359973..363022+ (Pylaiella littoralis U1_48)
TATATCAGGGACGAAGTGGAACGAGCCAAAAGAAGCGATATAGTAGTGAT
GGACTCTGCATCATTTGCGGTTTCAGCGGGCGAGGCTCTGGTGGCTTCGA
TCGGCGACATGACCAGTTCGTCGACGAACAAATTTCGAGACGTTTCAAGA
AAGGTCACCTTGGCCCGGTTGCTGGACGAGAAAAGCAGCAGCAGCAGCAG
CAGCAGCAGCGACAAGGCCAAAAGCAGCGATGACGACAAGGAAAACAGCA
GAACGACCACCAACTCCTCCGGCAGCGGAAACGCCATTTTGTCGGAACGC
TGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAGCAACGA
CAACAGCAGAAATAACAGCAGTTGCATCGGCGGCGGAACCACCACCCTCC
TGGCCAATCGCGGCGGCCTCGAGGCCCTCCGAGACCTGCGTGACCTCAGC
TCCATCGTGTCGGAGGTCGAGCGCAGAGCGGCTGCGCTGCGCGAGGCCAT
CGAAAGCCACCGTCGAGATAACATCGCTCGCCGAGAGATGTCCGAAACTA
CGCGCCAGCAGACCGCGCAGCTGGCCGCTACCTTATCAGCCCTGCCGGAA
CACCTCCCACACGCCGCCACGCCGCCGCCGCCGCCGCCGCCGACGGCGGC
GGCGGCGACGTCACAAAAAACGGCGGCAGCAGCAGTGGCGGTGGCGGCAG
CGGCGGCAGTTCCCACGGCAGGAGGGGCAGATTCGAATGCTGCTACTGTG
GCGTATCCTGTCGTGCGTTCCGCCGGAGGTATCCGACGAGGCGAAGCCGA
CGCAGCAGCCTCGGGCTTGACAGAGGTGCCCGTCCTGGAGCTGGTGACGG
TGGGGGAGCTCAATGGCGTGCCGCGATCCACCCGGGCGCGGCTTACGATT
GAGCAGGTTAACTCCGCGGTGACGGAGATCCAGAAGGCGGTGGAGAGGAG
GTACGCTACGTATGCTACTCATGCGCCGGTGTCTTGCCTTGGTTCTGATT
GTTTGCTTGTAGTGCCGTGGGTAGAAGCATCCGAGCACGCAGGGCTAATG
CATACGGTATTAGCTGAGTCAAGGCTCTCCAGGTTGGAGATATCTGTTAT
TGAATCAGGTTACCTATGCTGTACCCATGATTTCGAGCGAAGTTAGTCTT
CCAGTAGTGGAGAGTATCTAGATATGACCTCGCACGGCAGGAGTCAAGAG
GTCAGCAAAACAGGTAAGTTTTTGTTGCTGTGTACACGGCACCCCGGCAC
GAGAGAGGGGGTGGGGGCCGGAGGAGAGGGGGAGCGGGACGGGGGCGAGG
TAGAGCATGGAGAAAACGAAGTCGCCCAGGTATGCATGGTGTGGTGGCAG
GCTGCAAGAGGAAGCGAGGTTGTGTGATAAAGTGCATTGCGCCCCCCCCT
CCACCCCCACACACCGTGCTTCTCGACGGGGTATTTTCCCGTGCCCCACA
GTAGTCAAGACGCCCCCTGCCCCCCCACCTCCGATCCCCTTACCTTTCCG
GGTGAAGGCACGCTTTTCTCTCCAAGCCTCGGAAAAAAATGTCGGAAAAG
CAGCGCGGCCGCTTGGAAGAGCTACTGCGGCAGGAGGTTCCAGCTCACGG
AGGAGAGCCGTTCATCGCGGAGCCGGATTTACGAGCACTCCCAGCCTTCA
AAAAAGGAGAAGTGAGGGAACAATCAACCGGGCCCAGCTACAGCACGTAC
ACATTTTATTGCGCCTGTTGCAGCAGGCAGAGTAGAACAGCATCAATGTG
AATCCCAAAGGTATTAATATGTACCCTGGTAGAAAATAAGAACCCCACCT
CTCGACGGGAAATGGTGCACTGATGTACTAGGCACGAAGGTGAGAGACAA
AAACAACTACAACAGCAACAACAACAACCGACCCTTCGATCGATTCACTG
TACCAAAATATCGTTATCGTCTCTCTTTGCTAGTCGTTCTCCCTCTTTAC
TAAGACGTGCGGCAGCAGTATATGAAAGTAGCGTGCATCCTTGCTCTGCT
ATCGCACTAGCGTGCTGGCACAAAATGATGTTGATGTTCAGCGTCCGCAA
TCACAGACCAGTAACGCCACCTCCCGCTACACGCCAGCGAGCTCGAGTAC
ATGGAATTTGGCGGCATATCCAGGCCGGGCCGCCTCTGCTCCCTCGGTAT
CGAACCCAGGGCACTGGTTTGTAGCTGCTACTTACCAACGCTGGTACTCT
GTTGACCCACACACCCTTTGCTGCCGGGTATCAGAGCCTGTGAACGGCCG
TTCAATTTGGTTTTTGTACCGAAATTTTGTTCGCCCGTTCCCCTCCCCAA
AAAAACGCCTTGAATTGGCCCGACGAGCACTTACTTTTTCGAATTTTCGA
ATCGGCTCTCGGCGAAAGTCTGAGGCTGCAGACCGCAAGCAGCCATCTGT
GTGCACTTGGTACAGGTTCGCTTCAGGGAGAACAGCGGTCATATATAGTT
GGCTCTCCATACGCTGTACATACCAATTGGTGTGGTATACCACCGTGGTG
TTTGCATCTCGTAGACACCCAGATCAATCTATCGTTGCGTCAATGACGTC
ATCCCTCACCAACCCCGCCACGCCTTATGTCCCCTGCCAATCCATCCCTG
CTTTCCCTCCCAACCGAACGACGTCCTTCTTGCACGCGGGCTACGTGCTG
GCACCGACGCAGATGACAGCCAAGGCGCTGATCGCGACGCTGCGATTTCT
AAAGCGCTTGAAGGGGGTGCGTGGCGCGGGCATGATGACGTACGTCGTGA
AGGGGGGGTGATCAAATCTCAGCCCACCGCACCTGTCTACGTGGCTTTTC
GTTGCATTCTCTTACATGTGCTGTAGTGTACCCCGGTACCCGAGGAAATT
AGTAGAGGAGTGGCGCTTTTTTTCTTTTTTTGCTGTCGACAGCAAACTTT
GAGTGATTTAAGGCAAAGCGTTGTACGACTTATGGAGAACGAGAGAAGAA
GCGCGCGACGCGGTGAATATTACGGTAAAGCCGTTTGTGGGGTGTTGTTC
GCAACGGGCAACTGAGTTGCCTCAGAAAATTAATCGAGTGCAGTTGTGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig88:359973..363022+

>mRNA_P-littoralis_Contig88.87.2 ID=mRNA_P-littoralis_Contig88.87.2|Name=mRNA_P-littoralis_Contig88.87.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1188bp|location=Sequence derived from alignment at P-littoralis_Contig88:359973..363022+ (Pylaiella littoralis U1_48)
ATGGACTCTGCATCATTTGCGGTTTCAGCGGGCGAGGCTCTGGTGGCTTC
GATCGGCGACATGACCAGTTCGTCGACGAACAAATTTCGAGACGTTTCAA
GAAAGGTCACCTTGGCCCGGTTGCTGGACGAGAAAAGCAGCAGCAGCAGC
AGCAGCAGCAGCGACAAGGCCAAAAGCAGCGATGACGACAAGGAAAACAG
CAGAACGACCACCAACTCCTCCGGCAGCGGAAACGCCATTTTGTCGGAAC
GCTGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAGCAAC
GACAACAGCAGAAATAACAGCAGTTGCATCGGCGGCGGAACCACCACCCT
CCTGGCCAATCGCGGCGGCCTCGAGGCCCTCCGAGACCTGCGTGACCTCA
GCTCCATCGTGTCGGAGGTCGAGCGCAGAGCGGCTGCGCTGCGCGAGGCC
ATCGAAAGCCACCGTCGAGATAACATCGCTCGCCGAGAGATGTCCGAAAC
TACGCGCCAGCAGACCGCGCAGCTGGCCGCTACCTTATCAGCCCTGCCGG
AACACCTCCCACACGCCGCCACGCCGCCGCCGCCGCCGCCGCCGACGGCG
GCGGCGGCGACGTCACAAAAAACGGCGGCAGCAGCAGTGGCGGTGGCGGC
AGCGGCGGCAGTTCCCACGGCAGGAGGGGCAGATTCGAATGCTGCTACTG
TGGCGTATCCTGTCGTGCGTTCCGCCGGAGGTATCCGACGAGGCGAAGCC
GACGCAGCAGCCTCGGGCTTGACAGAGGTGCCCGTCCTGGAGCTGGTGAC
GGTGGGGGAGCTCAATGGCGTGCCGCGATCCACCCGGGCGCGGCTTACGA
TTGAGCAGGTTAACTCCGCGGTGACGGAGATCCAGAAGGCGGTGGAGAGG
AGGCACGCTTTTCTCTCCAAGCCTCGGAAAAAAATGTCGGAAAAGCAGCG
CGGCCGCTTGGAAGAGCTACTGCGGCAGGAGGTTCCAGCTCACGGAGGAG
AGCCGTTCATCGCGGAGCCGGATTTACGAGCACTCCCAGCCTTCAAAAAA
GGAGAAGTGAGGGAACAACTTGAAGGGGGTGCGTGGCGCGGGCATGATGA
CGTACGTCGTGAAGGGGGGGTGATCAAATCTCAGCCCACCGCACCTGTCT
ACGTGGCTTTTCGTTGCATTCTCTTACATGTGCTGTAG
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