mRNA_P-littoralis_Contig1205.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1205.12.1
Unique NamemRNA_P-littoralis_Contig1205.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1205.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1205contigP-littoralis_Contig1205:54528..55016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size489
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789516.843291-UTR-P-littoralis_Contig1205:54527..546091680789516.843291-UTR-P-littoralis_Contig1205:54527..54609Pylaiella littoralis U1_48UTRP-littoralis_Contig1205 54528..54609 -
1680789516.860805-UTR-P-littoralis_Contig1205:54918..550161680789516.860805-UTR-P-littoralis_Contig1205:54918..55016Pylaiella littoralis U1_48UTRP-littoralis_Contig1205 54919..55016 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789516.8519816-CDS-P-littoralis_Contig1205:54609..549181680789516.8519816-CDS-P-littoralis_Contig1205:54609..54918Pylaiella littoralis U1_48CDSP-littoralis_Contig1205 54610..54918 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1205.12.1prot_P-littoralis_Contig1205.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1205 54610..54918 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1205.12.1

>prot_P-littoralis_Contig1205.12.1 ID=prot_P-littoralis_Contig1205.12.1|Name=mRNA_P-littoralis_Contig1205.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
MCLVRWCACPCLRVIFFVVDRKYIVPHGQICLSSERRGTCGETYILNKAR
SVFCGRVRVSRSFERRHRRGGTRYSRVLSPCHLCRMTSSALLRLCILNKI
LK*
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mRNA from alignment at P-littoralis_Contig1205:54528..55016-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1205.12.1 ID=mRNA_P-littoralis_Contig1205.12.1|Name=mRNA_P-littoralis_Contig1205.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=489bp|location=Sequence derived from alignment at P-littoralis_Contig1205:54528..55016- (Pylaiella littoralis U1_48)
CATGAAGGAAAGGGTCCGGATAAAATCTGGTTGTTCGAGGGGCCCAGGAT
TGACCAATTCCATGTGTGTACCCGACGGATAGCAAGTGTCGATGCGTGAT
GTGTTTAGTACGTTGGTGTGCGTGTCCTTGTCTGCGAGTGATTTTTTTTG
TTGTAGACAGGAAGTACATAGTACCCCACGGTCAGATATGTTTGAGTAGT
GAGCGACGAGGAACGTGCGGCGAAACGTATATTTTGAACAAAGCACGTTC
TGTATTTTGTGGCAGGGTGAGGGTTTCTCGAAGTTTTGAAAGGCGTCATC
GTCGAGGTGGGACGAGATATTCGCGGGTTTTGAGCCCATGTCATCTCTGT
CGAATGACGAGTTCCGCATTGTTACGTTTGTGTATCCTGAATAAAATTTT
GAAGTAAAAAAAAGAACGGAAACACACGTTCGTGAGCAGGGCCAAACGGA
TGGCGTCGCTCCGTGTGAGCTTATCTGATTGCTTTGAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1205:54528..55016-

>mRNA_P-littoralis_Contig1205.12.1 ID=mRNA_P-littoralis_Contig1205.12.1|Name=mRNA_P-littoralis_Contig1205.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig1205:54528..55016- (Pylaiella littoralis U1_48)
ATGTGTTTAGTACGTTGGTGTGCGTGTCCTTGTCTGCGAGTGATTTTTTT
TGTTGTAGACAGGAAGTACATAGTACCCCACGGTCAGATATGTTTGAGTA
GTGAGCGACGAGGAACGTGCGGCGAAACGTATATTTTGAACAAAGCACGT
TCTGTATTTTGTGGCAGGGTGAGGGTTTCTCGAAGTTTTGAAAGGCGTCA
TCGTCGAGGTGGGACGAGATATTCGCGGGTTTTGAGCCCATGTCATCTCT
GTCGAATGACGAGTTCCGCATTGTTACGTTTGTGTATCCTGAATAAAATT
TTGAAGTAA
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