|
|
Homology
BLAST of mRNA_P-littoralis_Contig88.63.1 vs. uniprot
Match: D8LPM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM5_ECTSI) HSP 1 Score: 674 bits (1738), Expect = 3.700e-228 Identity = 492/915 (53.77%), Postives = 563/915 (61.53%), Query Frame = 1
Query: 1 VMLGWERRRPRVPTKLRIAEEDAATKPPEVKATVVRSAFAAISSRFPVSLQDLQAFVKAHGLGIAPATLREMVGKASAKRQNWQARGRDLPLRVMRDELWVEDVMWALRVRKTRREFDKWEVNDHRDKWVSILEAATPDNPTVFATSPDHRIAPPLSYTELLQDARSSSPVAFR-----------------------KQTPAGCNSSAG----GGSXXXXXXXXXXXXXXXXXXXXXXXRRTXXXXXSTGAMSRPSTTGKLWTPLESRSPTSLLLTSRPGSAVE-VGAGG-----NTAATTGEGTTFVTSGKAWAGEGGVGDPTVCCVPGWFASGGNNGRXXXXXXXXXXXXXXXEGYGGGRWPALTPQERALFGRKPSPATVARSTSYAPRRRPPRSADGRCSRPETGSGDDTAEVFEMERDINSSSFALTATSDLSTTATPRQRGPGDGRGGVRGVWGSVA-STLTFDNSADVSHGKSAAAAAGGAEAARATXXXXXXXXXXXXXXXXXXXXXAAVETVQAARKKM-------------NNSLDASGISKGEGXXXXXXE---------GAAEWWRGALGPTSRRPVTRRSLI-SGGVAVGGA-RNASCTWLQLEEGKARG-GRAPRGESGWSHDGMVYGGDGGNASGXXXXXXXGPRPWSSAAPICDFSTELKQRNLEEFLNRRSSIDELEGLASTRVRGCEAALARARSGTRFCRFVGRDTIRQNYDRSLRNKACETLSLDLRGYGTHLTALDASRAAKHSTARTSCGPVATDDDDDHRQPLPSPRRYRCATAG----AATGRLRARATTKAWSSSKIEGSNXXXXXXXXXXXXVPGVGSL-PSPTTGGGCVAXXXXXXXXXSRPPPFGPMRGTTVQEARTTVAIDQAGLWGKCAQGHFGRFEEKPYLHTF 2553
V L WERR PR+P KLRIA EDA TKPPE+K+TVVRSAFAAISSRFP DLQ FV AHGLGI+ ATLREMVG+A +KR NW+ARG+DLPLRVMRD LWVEDVMWALRVRKTRREFDKWE+N++RD+WVSILEAATP+N TVFA PDHRIAPPLS+TELLQ SS P Q+ G N +G G S XXXXXXXXXXXXXXX XXXXXS G+++RP +TGK+WTPLESR PTSLLLTSRPGSA VG G + A G W GEGG DPTV W GG+ G EG+ +T QERALFGRKPSPATVARSTSYAPRRRPP S DGR RPE GSGDDTAE++EMERDIN+SSFAL +DLS TA +RG GDGR VR WGSVA S LTFD++A +SH + A+A ++A T A T A K++ ++ D G +G XXXXXX AAEWW ALGPTSRRPVTRRSL SGGVA GA + TW EE G G+ R GW+ DG V GG+G G R S+AAP C FSTE KQRNLE+FL RRSS+D+ EGLAS RVR EA LARA+SGTRF +GR TIR+NYD+SLR+KACETL+LDLRGYGTHL A + +T + G A++ RCA+A AATG RA +AWSS++I G XXXXXXXXX GV L PSPT G S+PPPFGP+RGTTVQEAR T QAG+WGKC+QGHFGRFEEKPY+H+F
Sbjct: 2 VALRWERRHPRIPAKLRIAAEDAVTKPPEIKSTVVRSAFAAISSRFP----DLQVFVGAHGLGISQATLREMVGRARSKRSNWRARGKDLPLRVMRDTLWVEDVMWALRVRKTRREFDKWEINEYRDEWVSILEAATPNNHTVFAPPPDHRIAPPLSFTELLQQDSSSLPSVLSANPGGSSASVSNGXXXXTGSHLTSQSRGGRNDRSGSTGTGNSSERRIGGAXXXXXXXXXXXXXXXXXXXXXXXSMGSVTRPVSTGKMWTPLESRLPTSLLLTSRPGSAAAAVGGTGXXXXXDLAXXXXXXXXXXXXGNEWGGEGGAEDPTVWNFSSWTNGGGSGGANGHGSCE--------EGH------VVTAQERALFGRKPSPATVARSTSYAPRRRPPCSTDGRRHRPEVGSGDDTAELYEMERDINTSSFALADATDLSITAASHKRGRGDGRSAVR-AWGSVATSALTFDDAAGLSHANAEASA----DSATETSDRIDASASGGGRLRRASGTVTAGATAAAGVKRIGVPTFELSCPEDNDDQDDTGGGRQGXXXXXXXXXXXXXXXXAGSAAEWWCEALGPTSRRPVTRRSLDHSGGVAGRGAPQGTGGTWGPWEEDPGGGCGQHERSGCGWTSDGTVQGGEG---------YRGGRRRASAAAPNCGFSTESKQRNLEDFLKRRSSMDKSEGLASERVRVWEAGLARAQSGTRFRHQIGRGTIRENYDQSLRDKACETLALDLRGYGTHLL------APETATTIPTAGGGASE---------------RCASASGAGVAATG-TPTRAMKRAWSSTRIGGXXXXXXXXXXXG----GVRLLLPSPTGAGA----------DCSKPPPFGPVRGTTVQEARITAVTHQAGMWGKCSQGHFGRFEEKPYVHSF 848
BLAST of mRNA_P-littoralis_Contig88.63.1 vs. uniprot
Match: A0A6H5JI14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI14_9PHAE) HSP 1 Score: 464 bits (1195), Expect = 9.680e-145 Identity = 466/1175 (39.66%), Postives = 529/1175 (45.02%), Query Frame = 1
Query: 1 VMLGWERRRPRVPTKLRIAEEDAATKPPEVKATVVRSAFAAISSRFPVSLQDLQAFVKAHGLGIAPATLREMVGKASAKRQNWQARGRDLPLRVMRDELWVEDVMWALRVRKTRREFDKWEVNDHRDKWVSILEAATPDNPTVFATSPDHRIAPPLSYTELLQDARSSSPVAFR-----------------------KQTPAGCNSSAG--GGSXXXXXXXXXXXXXXXXXXXXXXXRRTXXXXXSTGAMSRPSTTGKLWTPLESRSPTSLLLTSRPGSAV----EVGAG--GNTAATTGEGTTFVTSGKAWAGEGGVGDPTVCCVPGWFASGGNNGRXXXXXXXXXXXXXXXEGYGG-GRWPALTPQERALFGRKPSPATVARSTSYAPR------------------------------------------------------------------RRPPRSADGRCSRPETGSGDDTAEVFEMERDINSSSFALTATSD------------------------LSTTATPRQRGPGDGR----------------------------------------------------------------------------------GGVRG-----------------------------------------------------------------------VWGSVASTLTFD-------------------NSADVSHGKSAAAAA------GGAEAA---------RATXXXXXXXXXXXXXXXXXXXXXAA-------VETVQAARKKMNNSLD-ASGISKGEGXXXXXXE---------GAAEWWRGALGPTSRRPVTRRSLISGGVAVGGA--RNASCTWLQLEEGKARG-GRAPRGESGWSHDGMVYGGDGGNASGXXXXXXXGPRPWSSAAPICDFSTELKQRNLEEFLNRR---------------SSIDELEGLASTRVRGCEAALARARSGTRFCRFVGRDTIRQNYDRSLRNKACETLSLDLRGYGTHLTALDASRAAKHSTARTSCGPVATDDDDDHRQPLPSPRRYRCATAG----AATGRLRARATTKAWSSSKIEGSNXXXXXXXXXXXXVPGVGSLPSPTTGGGCVAXXXXXXXXXSRPPPFGPMRGTTVQEARTTVAIDQ 2481
V L WERR PR+P KLRIA EDA TKPPE DLQ FV AHGLGI+ ATLREMVGKA +KR NW+ARG+DLPLRVMRD LWVEDVMWALRVRKTRREFDKWE N+HRD+WVSILEAATP+N TVFA PDHRIAPPLS+TELLQ SS P Q+ G +G G XXXXXXXXXXXXXXXXXXXXXXX XXXX S G+++RP +TGK+W PLESR PTSLLLTSRPGSA E GAG G+ A TTG T VT G W GEGG DPTV W GG+ G G+G G T QERALFGRKPSPATVARSTSYAPR RRPP SADGR RPE GSGDDTAE++EMERDIN SSFAL A +D LSTTA +RG GDGR GG G V G+ A + D N ++SH +++AAAA G AEA+ R AA V T + +R + N++ D +G +GE XXXXXX AAEW R ALGPTSRRPVTRRSL GG G + CTW EEG G G R GW+ DG + GG+G G R S+ A IC STE KQRNLE+FL RR SSI++ EGLAS RVR EA LA A+S TRF +GR TIR+NYD+SLR+KACETL+LDLRGYGTHL A + + ++A S RC+ A AATG +A +AWSS++I G N XXXXXXXX GVG L TG G S+PPPFGP+RGTTVQEAR T Q
Sbjct: 2 VALRWERRHPRIPAKLRIAAEDAVTKPPE----------------------DLQVFVGAHGLGISQATLREMVGKARSKRSNWRARGKDLPLRVMRDTLWVEDVMWALRVRKTRREFDKWEFNEHRDEWVSILEAATPNNHTVFAPPPDHRIAPPLSFTELLQQDSSSLPSVLSANPGGSSAXXXXXXXXXXXSHLTSQSRGGKKGRSGNTGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESMGSVTRPVSTGKMWVPLESRLPTSLLLTSRPGSAEAGVGETGAGACGDLATTTGGTPTVVTGGNEWGGEGGAEDPTVWNFSSWTNGGGSGGA---------------NGHGSCGEGHVATAQERALFGRKPSPATVARSTSYAPRLRRERVWGGQFVSVWRMECTIDRKRAGCEGESAVGRRKPTPEPDAEPARTPVVCSYFPDTNNTDGRRRPPCSADGRRHRPEVGSGDDTAELYEMERDINISSFALAAATDMNLLKKELLMMNHAVRFSCARATDLSTTAASHKRGRGDGRSAGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGGGEGEDLAEEPSPMGAQEEAGKTLGKSDAPKSNLCGGDGSGDASCHGGGGTAESNGGEDPETLLLGANAGGIQPPVSGTAARPPSRDGDHLEVLPPRSWTAPPPSSNGRNISHTRTSAAAAAAITTPGSAEASADSAPEISDRINASASGAGPLRRASGTVTVGATAAAGVKRIGVPTFELSRPEDNDAPDDTAGGGQGERXXXXXXXXXXXXXXXGNAAEWRREALGPTSRRPVTRRSLDHGGGVAGRGVPQGTGCTWGPWEEGAGGGCGLHERSRCGWTSDGTMQGGEG---------CRGGRRRASTGASICGVSTESKQRNLEDFLKRRCDARPESREGRSWTRSSINKSEGLASERVRVWEAGLACAQSRTRFRHQIGRATIRENYDQSLRDKACETLALDLRGYGTHLLAPETATTIPTASAGAS---------------------ERCSGASGAGVAATG-TPTKAMERAWSSTRIGGGNAXXXXXXXXG----GVGLLLPWPTGAGA---------DCSKPPPFGPVRGTTVQEARITAVTHQ 1095
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 2559 |
| Hectar predicted targeting category | other localisation |
| Exons | 12 |
| Cds size | 2556 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680791764.6380143-UTR-P-littoralis_Contig88:289012..289015 | 1680791764.6380143-UTR-P-littoralis_Contig88:289012..289015 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig88 289013..289015 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680791764.6486404-CDS-P-littoralis_Contig88:289015..289099 | 1680791764.6486404-CDS-P-littoralis_Contig88:289015..289099 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig88 289016..289099 + |
| 1680791764.6592896-CDS-P-littoralis_Contig88:289752..289806 | 1680791764.6592896-CDS-P-littoralis_Contig88:289752..289806 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig88 289753..289806 + |
| 1680791764.6801302-CDS-P-littoralis_Contig88:290675..290813 | 1680791764.6801302-CDS-P-littoralis_Contig88:290675..290813 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig88 290676..290813 + |
| 1680791764.6928053-CDS-P-littoralis_Contig88:291925..292030 | 1680791764.6928053-CDS-P-littoralis_Contig88:291925..292030 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig88 291926..292030 + |
| 1680791764.7141762-CDS-P-littoralis_Contig88:292484..292780 | 1680791764.7141762-CDS-P-littoralis_Contig88:292484..292780 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig88 292485..292780 + |
| 1680791764.7275207-CDS-P-littoralis_Contig88:293043..293439 | 1680791764.7275207-CDS-P-littoralis_Contig88:293043..293439 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig88 293044..293439 + |
| 1680791764.7374554-CDS-P-littoralis_Contig88:294380..294511 | 1680791764.7374554-CDS-P-littoralis_Contig88:294380..294511 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig88 294381..294511 + |
| 1680791764.75011-CDS-P-littoralis_Contig88:294919..295225 | 1680791764.75011-CDS-P-littoralis_Contig88:294919..295225 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig88 294920..295225 + |
| 1680791764.7615905-CDS-P-littoralis_Contig88:295621..295991 | 1680791764.7615905-CDS-P-littoralis_Contig88:295621..295991 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig88 295622..295991 + |
| 1680791764.771888-CDS-P-littoralis_Contig88:296466..296617 | 1680791764.771888-CDS-P-littoralis_Contig88:296466..296617 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig88 296467..296617 + |
| 1680791764.7856216-CDS-P-littoralis_Contig88:297069..297516 | 1680791764.7856216-CDS-P-littoralis_Contig88:297069..297516 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig88 297070..297516 + |
| 1680791764.7996347-CDS-P-littoralis_Contig88:297933..298011 | 1680791764.7996347-CDS-P-littoralis_Contig88:297933..298011 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig88 297934..298011 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig88.63.1 >prot_P-littoralis_Contig88.63.1 ID=prot_P-littoralis_Contig88.63.1|Name=mRNA_P-littoralis_Contig88.63.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=852bp
MLGWERRRPRVPTKLRIAEEDAATKPPEVKATVVRSAFAAISSRFPVSLQ
DLQAFVKAHGLGIAPATLREMVGKASAKRQNWQARGRDLPLRVMRDELWV
EDVMWALRVRKTRREFDKWEVNDHRDKWVSILEAATPDNPTVFATSPDHR
IAPPLSYTELLQDARSSSPVAFRKQTPAGCNSSAGGGSGGSWKSKSRSSN
AGRGGSSGSSGRRTGGGGGSTGAMSRPSTTGKLWTPLESRSPTSLLLTSR
PGSAVEVGAGGNTAATTGEGTTFVTSGKAWAGEGGVGDPTVCCVPGWFAS
GGNNGRGNGHGGSGGGGGGDSEGYGGGRWPALTPQERALFGRKPSPATVA
RSTSYAPRRRPPRSADGRCSRPETGSGDDTAEVFEMERDINSSSFALTAT
SDLSTTATPRQRGPGDGRGGVRGVWGSVASTLTFDNSADVSHGKSAAAAA
GGAEAARATEAGAATEGTKTAGEREGAEEEAAVETVQAARKKMNNSLDAS
GISKGEGEREREGEGAAEWWRGALGPTSRRPVTRRSLISGGVAVGGARNA
SCTWLQLEEGKARGGRAPRGESGWSHDGMVYGGDGGNASGGCGGGGGGPR
PWSSAAPICDFSTELKQRNLEEFLNRRSSIDELEGLASTRVRGCEAALAR
ARSGTRFCRFVGRDTIRQNYDRSLRNKACETLSLDLRGYGTHLTALDASR
AAKHSTARTSCGPVATDDDDDHRQPLPSPRRYRCATAGAATGRLRARATT
KAWSSSKIEGSNNGGGGNGGGGGGVPGVGSLPSPTTGGGCVAGGGPAGGG
PSRPPPFGPMRGTTVQEARTTVAIDQAGLWGKCAQGHFGRFEEKPYLHTF
R* back to topmRNA from alignment at P-littoralis_Contig88:289013..298011+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig88.63.1 ID=mRNA_P-littoralis_Contig88.63.1|Name=mRNA_P-littoralis_Contig88.63.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8999bp|location=Sequence derived from alignment at P-littoralis_Contig88:289013..298011+ (Pylaiella littoralis U1_48)
GTCATGCTGGGCTGGGAGCGTCGGCGTCCACGGGTCCCTACGAAGCTCAG
GATAGCAGAGGAGGATGCGGCCACAAAGCCCCCCGAGGTGTGACTAGTGC
ACACACACATCAAAATGCACATCATCATACGAAGTATTTGAACTGACAGC
GCAAGTAATGCTGCAGTATTGTTTTGTAGTCTTAAAACAATGATCTCCAT
TACCCAGCACAGCAGTGTAGTTCGCAGGCATGGCTTGTCGTACACACAAT
TATCATAATAAGTAGAAGGTCCTTATGGCTGGTATCAGACCCACATCCAC
CGACGAGAAAATACGGCGTCGTATCTGTAATTTTGTAATTTTGGTTCATG
CATCCGTCAGCCAATTAATTGCGACCCTCGGGGGGGTGTGCGCTTTCAAG
AGCGGCAAGAGGTGGTGCCCAGCATCATGGCATGCTTGGGGGTCATAGCA
CACCCGGGATGTATATAGTGTCTAATAATGTGTTTCCGAGAACGGTGATT
TCTTTGTTGCATGGTGCAGACAAGATCAACATGTACGAAGTATGTCATTT
GTGCTACTTCAGCTGTCCTCAAATAATCATAACGCTAGCCCTGAAGCAAC
TACTCCAGGGCACTGTGGGTATCCTGTACGATGCTCCTTGTATTATACGG
TGAACCGGCGCGCTGAGTTGTTCATGCTGCCCCACGGTGTTCCCATGAGA
CTCCTCTAATTTTCACGCGCGTGTGTGTCTGAAAACGAAGGTCAAGGCCA
CCGTTGTGAGGAGCGCCTTCGCCGCCATCAGCTCCAGATTTCCGGTGAGA
GCGAACATTGTTTACGGAGTACTCGACGGCTGCCCACCTGATGCCGGGGG
AGGTTGTATACGTAAGTAATTGCGAGATCAATCGAAATACTAATAATTGA
CGTCATCTTCGACGTTTTGGAGCCAGTCCTCCTTCTGTCACATGCCGAAT
GGATGGATGAAGAGGACACCGACCAATATTAAGTAGTTTCGGAATTCCGA
ATTCCTGGCTTCACACACAATGAATATTCATATCTCCTTCCCCGCCATAT
TGGAGGCTCAAATGCATCCAACCAAAAGTGCGTAGTGCTTATTTTGCTGT
GTTCGTTCTCTTCTGAGGTCTGACCATAAAACTCGTAAAATGCTGCGCAA
GCCAACCTCCTACTACAGCGGCATCGTAGATCGCATGCTGCTCTCAGGCG
AAATCCACCAGCAGCGCCTACTTGTACCACAACACAGCGGTTACAGTAAG
GGACAAAGCTAAAGGGTTTTCTTTAAGACTCAAGCCCTTCCCCCATATTT
TCTGATTCTCGTCGGCCTCCTTCTCTACGTCTGAGCAAAACGCATTTTTC
TTCCCTCCCTCCCTGGTTGGTTCTTGTCACTGGAACTACCAACATTGGTT
CTCGCCAGTCTTCGTTTTGATCTCTGGCAGTTTTAGTCTCAGGAAGTCAT
GCTTGACTACTGCTATGTACTGCTGGTGGTATGCGTTTGTTCTATTCTAT
ATCCCCGGCATAGCTATGAAACACACATTCACCCACAAGGCGGAGATGTC
AGGGTCAATTCGTTATCACATGAACAGTTCAAATGGCGTCCGTCCTTCGC
TCTCTCGTGTGTCTGACCCATCGGGGCTATCGTACGCAAAAACGGCGGCG
GCGTCAGTCCGAGGTTTCCCTTCAAGATCTTCAGGCGTTTGTCAAGGCGC
ACGGCCTGGGTATTGCGCCCGCGACGCTGCGCGAGATGGTGGGCAAGGCC
AGCGCGAAGCGACAAAACTGGCAAGCGAGAGGAAGGGATCTGCCACTCAG
GGTGAGAAAATTTGAATCAAAACGGTGTTGTGTGTAGAAAGCGAGAGAAA
GAGAGAGGGACACGGAGAGGCAGAGAGATAAATAAAGAGAAAAGAGAATG
CTCGAGGAACGCTGGAAGGCCCGTGGGCAGCATGACGTACCCCTACAATA
TAGGAAGTTGCCTCTCGATATAAATGGGCCGAAAAACGAATACTTGAGTA
TACTTCCTCTGTATCATAAGTCTGTGCCGTTATGTTTTTACGCCCCCTCA
ACGGTGTCCGATGTCTTCGGCGATAATTTTTTCGAAATCTTCGGAGTTTT
TTGGGTTGAAACACATATATATTTTTTTCTTGCGCACTACCCTGCGCATG
GGCTAGCGGCTAACAAAAAAGTAGTCAGGCCAAAAATGGCCGTATTTAAC
CCTTTCCAGAGGTGGAGTGGGGGGCGGGGGCAAAAAAAAAGACCAATGCA
ATCCCCCCCAAAATTATCCCTAACCCTGAACCTAGCCCCCCTACCTCATA
GATTCATGTCGAGTCCCTCCTTACTAAAATCAGTATAATAGTGACGCGAC
GCTAAAGCCGAGACACTTGGGTTTACAACACTAAAACGAAGATACTTGGG
ACTCATGCTCTAAAATCAAGACATCTGGCGGAATCAAAATTCTTTAAATG
GGCCAAAATGGGCATATTTTGACTTCATTTTAGTATAAACAACTGGCTTT
TTTTTTGCTTTTTTTTTGCATCAGCTTCTTTGAGACTTCATCTTTCAAAC
GAACCTAACTATAGGATGATCGAAACAGTATGGATGCGCAAACAATTACA
CGCACCTAACAGCCCAGACTTATGATACGGAGGACGTATATAAACTTGAA
GCCGTGATAAGACGTAGCCGAAGACACTCGTACACTTTTGTACAAGATGA
GGGGAAAACTCAACGACGACTCTGGGCATGGTCACGTTCATGCGCGTCGA
ATGAAAGGCAATAGGCTCTCGCAAGCAACATTTCTTTGCATGCACAGCTA
CCGTATTACCTTACTTTAACTACCCGCTGTCCATCACAAACAAACACGCC
TTCTTGACGTGCGACTACGTTCAAGACCACCATTGATTTTGTTTTGGAAT
AATACGGGAGCAGGTCATGAGAGACGAGCTGTGGGTCGAAGACGTTATGT
GGGCTTTGAGAGTGAGGAAGACAAGGCGAGAGTTCGACAAGTGGGAGGTC
AACGATCACCGAGATAAGGTGGGGTGTATTACGCTTGTCAGTCCCCCCCC
TCCTCACGGCCGATCAAGTACATGATCCACCAACTTATCATTTAGTGCGT
ATCGTTGATTCCCTCGTTCCGAGAGTCTCTAGAGACGATCCTTCACCGAT
GCTCTTGGTAGGTTTTCTCTTCGCCCTACAGACCTGCTGCAGGCAACGTG
AAAGAGTATGTCATGCGCTTCACACTGGTTAACTTTGTGATTTTTTCTTT
TGACTTCATTCCTCCCCCCCCCGCTTCGGTTGACCGATCTCTTGGTTGTG
TGTGTGGTTCGCTGCCTGGCCTCCTTGTAGTCCACTTCTTCTCCTGTCCT
TAATCCACACCTGTGCACAGACATACACACGCGCGGCTTCTCCTCTTCCC
CCTTCACCTTAAAATACTTGTACTGGTCATGCTTAAAGCTTACCTCCTCT
ACTTGCTGTGGTATGAAAACAGTGGGTTTCCATCCTCGAGGCCGCCACCC
CGGACAATCCTACTGTCTTCGCCACGTCACCGGACCACCGCATTGCCCCG
CCCTTGAGCTACACCGAGCTGCTTCAAGATGCGCGTTCGTCGTCACCAGT
AGCTTTTCGGAAACAAACACCCGCTGGCTGCAACAGTTCGGCCGGCGGCG
GCAGCGGCGGCAGTTGGAAATCGAAATCACGCAGCAGCAACGCTGGTCGC
GGAGGTAGCAGTGGCAGTAGCGGACGGCGAACGGGAGGAGGAGGCGGCTC
GACGGGAGCTATGTCAAGGTACGGCCCGACGAACAAGAAGGAAGGAAGGA
AGAAAGGAAGTGACGAATGACGGGAGGAAGGAAGGGAGGAAGGAAGCGTG
GCGAGGAACTTTTTGTTTGTGCCATCTGCATGTAGTCATGCCGTGCGGTT
CACCACCGCGCACACACGCACATCTACATACCATGGCCCCAGACGGCACG
AAAGACACTGACGGTAGAAGCATATCCTCATTCCCACCCTCCACGGCGGT
GCCCTTATAACCCTGCTTGAATGATCATCAGACCTTCCACTACGGGAAAG
CTGTGGACGCCACTAGAGTCCCGGTCACCCACGTCCCTTCTGCTCACATC
GAGACCAGGGTCGGCGGTGGAGGTGGGGGCGGGGGGTAATACAGCTGCTA
CTACGGGGGAAGGGACAACCTTCGTGACTAGCGGGAAGGCATGGGCGGGA
GAGGGGGGCGTCGGGGACCCCACCGTGTGTTGCGTTCCGGGTTGGTTCGC
AAGCGGCGGGAACAACGGCAGGGGAAACGGCCACGGTGGTAGCGGTGGCG
GCGGCGGCGGCGACAGCGAGGGTTATGGTGGTGGTCGCTGGCCCGCCTTG
ACTCCTCAAGAACGAGCTCTTTTCGGGCGAAAGCCGTCGCCGGCGACAGT
CGCTCGCTCTACTTCCTACGCGCCTAGGTGTGAGACACACCGCCCCAGCG
TGTTTTAGTGTCCTTTTATCTAACAGCAGCCGTTTGTTTCTGCTGCTCTG
TCTCTGTTGGAAACGCGAAAGGTACTGGCCTAAGCCGACACATCGTTGGT
TTTGGAAAAGGTTGCAGAAATGTTCTCGAACGTTCATGTCGAGTACCAAG
CATGACGCTTATGTTTCTTCGACGTCGGCTGCCACATTCTCGTCATGACC
AGAAATTCGCCCGCCTTAAAAGAGAAGCACGATCGTGTGTATCTGTGCGA
AAACACTGCTGCTGTGTAGCGTGTTCCTCGAGGTAAACAAGCATGGTATA
TTCCGCGAAACAGTCCTGCTGCTTGGCTTGTTGGCTGCCACAGACGGCAC
AAGGAGCCCACCGCCCCCCTGAAACGACGCCTCCCGGTCGGTCACTCTAC
AACAGGGGAGGTTGCCAAGATAGTTTGGAACCTTTTAGTTAGGAAACTGT
CGGCAAGACCTTTCTGAAACGATCTTCCTCGGCATCGCCTTTAACTGCTG
TCTCCTTCTGTGGGAGAACTCCAGCGGGAAGAGCGGTGTCAGAGGGGGTT
GGGGCGGGTCGTTTCGCGTATACATGTAGTTTATCATTAGCCTTCAAGAT
ACTTGTTTCGAGGAGGGGACGCGCTTTGGAACCAAGTCACCGGTCCGACG
GTGTCATTGGTACTTTGTGACTCCCGGCTGTCCGCAGTCGGCCGTGACTG
GACTGAACGTGACAAGACTAGTCTGGCCGAGATAAGATTTGGAGAACGAG
TGGAGATTTTTCGTTGAATGTCATGACTTGCGATTCCCGCTGCCCGGGCG
CACTTGCTATGACGATGGAAGCCGTTCTCGAATAAAGTGGCTGTGCTAGG
TAAGCACGGAGCAGAGAGCGAGGGAATTCATTTGTCAGCGCCAACACGTG
CGTCCACCACACCGGCAGGAGACGGCCGCCACGCAGTGCCGACGGACGGT
GCTCCAGGCCCGAGACCGGGAGCGGCGACGACACCGCCGAAGTGTTCGAG
ATGGAGAGGGACATCAACAGCTCGTCGTTCGCCCTGACGGCTACCTCGGG
TGGGTGGGTGGGTGGGTGTACGTTCGTTCGGGTCACTCATTGCCTGCACA
TATCATGGCGCGGGTCATTAATTCGGTGTTGACTTCTTCATGCTTTCGAT
CTGTGTCCTTTCTCACGTGTCCATCCACCGCAACGGGTTTCGTCAGAAAA
CATGCCGGCCGATATTGATTTATAGTCACAGAAAGGTTTCATTCCCTGAA
GCCCCTGCGTTCCAAATACTGTGAAGGTAGGTCCAGACCTGTCCACATCA
ACGTTTCCAATCCATTTTCGGACTCCAAGTATTATGTATCATAGAAGATG
TCGGCTACTGCTGTATGTATACACGCGTCGTCGTCGTTCCATAGAGTCTA
AAAATACCGTGTCTGTTCTACACGCCGCGGCTTTTTCGGGGGCGGCAGAG
GATGCAGATCTCTCCACCACTGCAACCCCTCGGCAACGCGGGCCCGGGGA
TGGGCGAGGCGGGGTAAGGGGGGTGTGGGGCTCCGTTGCATCCACCCTCA
CGTTCGACAACTCGGCCGACGTCTCCCACGGCAAGAGTGCGGCGGCCGCA
GCCGGAGGGGCAGAGGCAGCAAGAGCGACAGAGGCAGGGGCAGCCACAGA
GGGAACAAAAACAGCAGGAGAGCGCGAAGGAGCAGAAGAAGAAGCAGCAG
TAGAAACAGTCCAAGCTGCTCGTAAAAAGATGAACAATAGCCTCGACGCT
AGTGGCATCAGCAGTGACGATTTCGCCCGCCACGGCTCTGATGATGTTGG
AGTAGACTACTCCAGCGCCGGCACGGCCATGGTGGCAGAGATCGGTCAAG
CTGTAGGAGCGCCGGTACCACCCACGAAGACGACCAGGACGCCGCCGCGT
TCGTCGGCTGCTGTCGCTCCTCTATCTGACGAACCGAGCGTTGCCGTGCA
CTCCGATCAAGTTTTACCGTTGCCTGCACCATCTGGGACGGCGATGGCAG
CAGCAGCAGCAGTCGACGGCGGCGGGGGTAAAAATAATGGCGTTACTGGC
GTGGGTGGCCTTACCGGTGGAGAAGAAGAACTTTCGCCTGCAGGAAACGG
CGACTCTACTTCTTCCGAGGATCGTCATGGGCGTGTTCATGCTCAGCACC
ATCCATCAGAGGGAGAGGGGGAGAGGGAGAGAGAGGGAGAGGGCGCGGCC
GAGTGGTGGCGCGGGGCCTTGGGGCCGACATCGAGACGGCCTGTAACGAG
ACGTTCCTTGATTAGCGGCGGAGTGGCCGTTGGCGGAGCAAGAAATGCCA
GTTGTACCTGGTTGCAGCTGGAGGAGGGAAAGGCGAGGGGGGGGCGAGCA
CCACGCGGTGAGTCCGGATGGAGCCACGATGGGATGGTATACGGGGGTGA
CGGAGGCAATGCCAGCGGCGGCTGCGGGGGCGGCGGTGGGGGGCCGAGAC
CATGGAGTTCAGCTGCTCCGATTTGCGACTTCTCGACAGAGTTGAAGCAA
CGAAACTTGGAGGAATTTCTGAATCGGAGGTACATCGATGCATAGCACGA
GGAGGAAGTCGAGAGAAATTGGCATGGTTGTCGGGGTAAAACCAGGTACT
TTTCTGCATCTCATTGGTTCGCTGTACACTGAATAGTACGATGCAGACAT
GTGTGTGCACCTCAAATCTCAAGATTTCTTCGTTCAGGACAGACGTGTAG
CTGTGCCACGCCAGCCAGGATCGACGCTCTAGGTAGATATCGCAGTCCAT
GGCTGGTTATTTTGCATCGCGGAGGCTATAAAACAATACAAGGTTTAAAA
ATACAAATTAAAGATCGCTAAGGGTCCCTACTCAATCACGCACACGCACC
ACGCTACAACACTTCGTAGCGTCCTACGGCAGTTGATACTTTTTGTTGGC
ATACGGCCTGCGTTCGACAACTAACCGTCAATGACACGGGTATCCGGCTT
AGTAAGGCCCGGTTGCTTCACTATCGGGCCTGTTTCGGAAAACGTCCACA
ACAGATCATCCATTGACGAGTTGGAAGGATTGGCCTCGACGCGGGTGCGA
GGGTGCGAGGCGGCTCTAGCTCGCGCCCGGAGCGGCACGCGTTTCTGTCG
CTTCGTAGGCCGGGACACGATCAGGCAAAACTACGACAGAAGCCTCAGAA
ACAAGGTGTCTTTCAGATCGACGGGTGCTGAGCGTGCAACAAACCGATTG
GACGAGTCGAAAATCTTCATGAAGTCGTCTTGTCAGGGTTGATGTTTGGC
TCTTTAGTTGTCCATGTAGGAGAAAATTTGCCCTCGTAGATGCCGAGTGA
AAGAAGCTTGCGGGGGCTTGAGTTGCGGTTGAAGGTATTGGCACGTTCGC
ACGCACCACACAGTAGAAAGTACATGTGCTGACCAACCGCCCACAAGGTG
TTGTATTATGGCCAAAAGCGCAAGACAAGGCAGCAACCCGACTTCTTCTG
TTGTTTTGCCCGGAATTTTTCTGACAAAGTACGAGTGCTTGCGTTTCTTT
CGCCCGATGTTGTACTCATTCGTTCGTTACTGAAGTCCGAATCCACCAAC
CACAAAAAAAGTAACTGCTGCCGTGCGACGGCACGCGTGTTTGTATGCAT
GCGAAAGGCGTGCGAGACGCTGTCGCTGGACCTCAGAGGCTACGGCACAC
ATCTCACCGCCCTGGACGCGTCACGAGCGGCGAAACATAGTACCGCACGT
ACTTCTTGCGGCCCCGTTGCCACCGATGATGATGATGACCATCGTCAGCC
GCTGCCTTCGCCTCGTCGGTACCGCTGCGCGACCGCCGGCGCAGCAACAG
GGAGATTGCGAGCGAGGGCAACGACAAAGGCATGGTCGTCGAGTAAGATC
GAGGGGAGCAACAACGGTGGCGGAGGCAACGGCGGTGGTGGCGGTGGTGT
ACCCGGGGTTGGGTCGTTGCCATCGCCGACGACGGGAGGGGGGTGTGTGG
CAGGCGGGGGTCCGGCAGGCGGGGGTCCGTCGAGGCCCCCACCGTTCGGG
CCCATGCGCGGTACCACCGTGCAAGAGGCCCGAACCACCGTGGCCATCGA
TCAGGTTTGATGGCGCCATCCTCGTCTTCGTTGTCGCGTTTCTTTTTCTT
TTCTTTTTCTTATTTACCCAACATCAACCCAAGCACGACAGGAGAAATAT
TCGTGCTTCGTGCTTGTTAAGATAAAAACAGCACGAGGCGACGGCTGAAG
GTGGAGGAGGAGGAAAAACGACAGCAAATTTACACATACCTGGTATATTT
TACGGGTAAGATGGGTACAACGATAGGATAACAACGAAGGCGAACGGACT
TGTGCGCAGTATATGCTTGTGAGTATCCACTCCAAGCTGTGTGCGAGGCG
GAGCTGAAAGAGGCACGCAGTCGTCTGTTCATCGCGCGCCCGTCTACCCC
GCTACCGCCACTACTTATTCTCGTCTCCGCTAAGTGTGGACCTATTTCCC
CTTTTCCAACTACAACGGCAGGCGGGGTTGTGGGGCAAGTGCGCGCAGGG
GCACTTCGGCCGCTTCGAGGAAAAGCCTTATCTCCATACCTTCAGGTAG back to topCoding sequence (CDS) from alignment at P-littoralis_Contig88:289013..298011+ >mRNA_P-littoralis_Contig88.63.1 ID=mRNA_P-littoralis_Contig88.63.1|Name=mRNA_P-littoralis_Contig88.63.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2556bp|location=Sequence derived from alignment at P-littoralis_Contig88:289013..298011+ (Pylaiella littoralis U1_48)
ATGCTGGGCTGGGAGCGTCGGCGTCCACGGGTCCCTACGAAGCTCAGGAT
AGCAGAGGAGGATGCGGCCACAAAGCCCCCCGAGGTCAAGGCCACCGTTG
TGAGGAGCGCCTTCGCCGCCATCAGCTCCAGATTTCCGGTTTCCCTTCAA
GATCTTCAGGCGTTTGTCAAGGCGCACGGCCTGGGTATTGCGCCCGCGAC
GCTGCGCGAGATGGTGGGCAAGGCCAGCGCGAAGCGACAAAACTGGCAAG
CGAGAGGAAGGGATCTGCCACTCAGGGTCATGAGAGACGAGCTGTGGGTC
GAAGACGTTATGTGGGCTTTGAGAGTGAGGAAGACAAGGCGAGAGTTCGA
CAAGTGGGAGGTCAACGATCACCGAGATAAGTGGGTTTCCATCCTCGAGG
CCGCCACCCCGGACAATCCTACTGTCTTCGCCACGTCACCGGACCACCGC
ATTGCCCCGCCCTTGAGCTACACCGAGCTGCTTCAAGATGCGCGTTCGTC
GTCACCAGTAGCTTTTCGGAAACAAACACCCGCTGGCTGCAACAGTTCGG
CCGGCGGCGGCAGCGGCGGCAGTTGGAAATCGAAATCACGCAGCAGCAAC
GCTGGTCGCGGAGGTAGCAGTGGCAGTAGCGGACGGCGAACGGGAGGAGG
AGGCGGCTCGACGGGAGCTATGTCAAGACCTTCCACTACGGGAAAGCTGT
GGACGCCACTAGAGTCCCGGTCACCCACGTCCCTTCTGCTCACATCGAGA
CCAGGGTCGGCGGTGGAGGTGGGGGCGGGGGGTAATACAGCTGCTACTAC
GGGGGAAGGGACAACCTTCGTGACTAGCGGGAAGGCATGGGCGGGAGAGG
GGGGCGTCGGGGACCCCACCGTGTGTTGCGTTCCGGGTTGGTTCGCAAGC
GGCGGGAACAACGGCAGGGGAAACGGCCACGGTGGTAGCGGTGGCGGCGG
CGGCGGCGACAGCGAGGGTTATGGTGGTGGTCGCTGGCCCGCCTTGACTC
CTCAAGAACGAGCTCTTTTCGGGCGAAAGCCGTCGCCGGCGACAGTCGCT
CGCTCTACTTCCTACGCGCCTAGGAGACGGCCGCCACGCAGTGCCGACGG
ACGGTGCTCCAGGCCCGAGACCGGGAGCGGCGACGACACCGCCGAAGTGT
TCGAGATGGAGAGGGACATCAACAGCTCGTCGTTCGCCCTGACGGCTACC
TCGGATCTCTCCACCACTGCAACCCCTCGGCAACGCGGGCCCGGGGATGG
GCGAGGCGGGGTAAGGGGGGTGTGGGGCTCCGTTGCATCCACCCTCACGT
TCGACAACTCGGCCGACGTCTCCCACGGCAAGAGTGCGGCGGCCGCAGCC
GGAGGGGCAGAGGCAGCAAGAGCGACAGAGGCAGGGGCAGCCACAGAGGG
AACAAAAACAGCAGGAGAGCGCGAAGGAGCAGAAGAAGAAGCAGCAGTAG
AAACAGTCCAAGCTGCTCGTAAAAAGATGAACAATAGCCTCGACGCTAGT
GGCATCAGCAAGGGAGAGGGGGAGAGGGAGAGAGAGGGAGAGGGCGCGGC
CGAGTGGTGGCGCGGGGCCTTGGGGCCGACATCGAGACGGCCTGTAACGA
GACGTTCCTTGATTAGCGGCGGAGTGGCCGTTGGCGGAGCAAGAAATGCC
AGTTGTACCTGGTTGCAGCTGGAGGAGGGAAAGGCGAGGGGGGGGCGAGC
ACCACGCGGTGAGTCCGGATGGAGCCACGATGGGATGGTATACGGGGGTG
ACGGAGGCAATGCCAGCGGCGGCTGCGGGGGCGGCGGTGGGGGGCCGAGA
CCATGGAGTTCAGCTGCTCCGATTTGCGACTTCTCGACAGAGTTGAAGCA
ACGAAACTTGGAGGAATTTCTGAATCGGAGATCATCCATTGACGAGTTGG
AAGGATTGGCCTCGACGCGGGTGCGAGGGTGCGAGGCGGCTCTAGCTCGC
GCCCGGAGCGGCACGCGTTTCTGTCGCTTCGTAGGCCGGGACACGATCAG
GCAAAACTACGACAGAAGCCTCAGAAACAAGGCGTGCGAGACGCTGTCGC
TGGACCTCAGAGGCTACGGCACACATCTCACCGCCCTGGACGCGTCACGA
GCGGCGAAACATAGTACCGCACGTACTTCTTGCGGCCCCGTTGCCACCGA
TGATGATGATGACCATCGTCAGCCGCTGCCTTCGCCTCGTCGGTACCGCT
GCGCGACCGCCGGCGCAGCAACAGGGAGATTGCGAGCGAGGGCAACGACA
AAGGCATGGTCGTCGAGTAAGATCGAGGGGAGCAACAACGGTGGCGGAGG
CAACGGCGGTGGTGGCGGTGGTGTACCCGGGGTTGGGTCGTTGCCATCGC
CGACGACGGGAGGGGGGTGTGTGGCAGGCGGGGGTCCGGCAGGCGGGGGT
CCGTCGAGGCCCCCACCGTTCGGGCCCATGCGCGGTACCACCGTGCAAGA
GGCCCGAACCACCGTGGCCATCGATCAGGCGGGGTTGTGGGGCAAGTGCG
CGCAGGGGCACTTCGGCCGCTTCGAGGAAAAGCCTTATCTCCATACCTTC
AGGTAG back to top
|