mRNA_P-littoralis_Contig88.55.3 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig88.55.3 vs. uniprot
Match: D8LPM3_ECTSI (Short-chain dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPM3_ECTSI) HSP 1 Score: 569 bits (1467), Expect = 2.900e-197 Identity = 280/330 (84.85%), Postives = 305/330 (92.42%), Query Frame = 3
Query: 228 STTSKLKDVTQDLQGKHYIVTGANTGIGYATARELAKMGAKVTLACRSAERGQQAVDKMKEEALEKPVKEGVDLLEGISDVDVKLEILDLGSLQSVISFAQRFKASGAKADVLINNAGIMAIPERRETVDGFEMQIGVNHFGGHLLTRLMEPMIVDGGRVVFLSSLAHRQPPGKHKITLDFDNVNYEKPDTYDSWMAYGRSKLANILDAKEFSTRLAARGISTYACHPGVVNTELMRNMTDDSLASRIARWAAPLAKYILATPLTGALTTIRCAVDPSLAGPEFSGKYWGNMNEQKPSALALDPANPPRLWEITESMLEAKLGKKVDDLL 1217
ST K K V QDL+GKH++VTGANTG+GYAT RELAKMGA VTLACRSAERGQQA+DKMK EALEKPVKEGVDLLEG++DVDV+LE+LDLGSLQSVI+FAQRFKASG K DVLINNAGIMAIPERRETVDG EMQIGVNHFGGHLLTRLMEP++ DGGRV+FLSSL HRQPPG+ K+TLDFDNVNYEKPDTY+SWMAYGRSKLANILDAKEF+ RL ARGISTYACHPG+VNTELMRNMTD SL SR+ R APL+++ILATPLTGALTTIRCAVDPSLAGPEFSGKYWGNM E+ PS LALDPANPPRLWE+TES+LEAKLGK VDDLL
Sbjct: 6 STNCKAKSVCQDLRGKHFVVTGANTGLGYATTRELAKMGAAVTLACRSAERGQQAIDKMKAEALEKPVKEGVDLLEGLTDVDVRLEVLDLGSLQSVIAFAQRFKASGTKVDVLINNAGIMAIPERRETVDGLEMQIGVNHFGGHLLTRLMEPLMNDGGRVIFLSSLGHRQPPGQAKVTLDFDNVNYEKPDTYNSWMAYGRSKLANILDAKEFAKRLEARGISTYACHPGIVNTELMRNMTDSSLMSRVTRLTAPLSRFILATPLTGALTTIRCAVDPSLAGPEFSGKYWGNMKEETPSELALDPANPPRLWEVTESVLEAKLGKNVDDLL 335
BLAST of mRNA_P-littoralis_Contig88.55.3 vs. uniprot
Match: D8LP30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP30_ECTSI) HSP 1 Score: 469 bits (1208), Expect = 6.900e-156 Identity = 239/335 (71.34%), Postives = 274/335 (81.79%), Query Frame = 3
Query: 219 FGPS-TTSKLKDVTQDLQGKHYIVTGANTGIGYATARELAKMGAKVTLACRSAERGQQAVDKMKEEALEKPVKEGVDLLEGISDVDVKLEILDLGSLQSVISFAQRFKASGAKADVLINNAGIMAIPERRETVDGFEMQIGVNHFGGHLLTRLMEPMIVDGGRVVFLSSLAHRQPPGKHKITLDFDNVNYEKPDTYDSWMAYGRSKLANILDAKEFSTRLAARGISTYACHPGVVNTELMRNMTDDSLASRIARWAAPLAKYI-LATPLTGALTTIRCAVDPSLAGPEFSGKYWGNMNEQKPSALALDPANPPRLWEITESMLEAKLGKKVDDLL 1217
FG S T K K + QDL+GKH+IVTGANTG+GY TARELAKMGAKVTLACRSAERGQQA+DKMK EALEKPVKEGVDLL+G+++VDV+LE+LDLGSLQSV++FAQRFKASG K DVL+NNAGI +P RRET DG EMQIGVNHFGGHLLTRLMEP + DGGRV+FLSSLAH +PPG K T D+DNVN++KP TYD AY RSKLANI DAKEF+ RLAAR I+TYA PG+V TE+ R + L I ++ L PL GALTT+RCAVDPSLAGPE SGKYWGNM E+ PS LALDPANPPRLWE+TES+LE KLGK+VDD++
Sbjct: 151 FGDSKATRKAKSLRQDLRGKHFIVTGANTGLGYVTARELAKMGAKVTLACRSAERGQQAIDKMKAEALEKPVKEGVDLLDGLTEVDVRLEVLDLGSLQSVVAFAQRFKASGTKVDVLVNNAGIFGVPNRRETADGLEMQIGVNHFGGHLLTRLMEPSMNDGGRVLFLSSLAHSRPPGMPKTTWDWDNVNFDKPKTYDRLSAYCRSKLANIWDAKEFAKRLAARSINTYAVQPGLVKTEIHRGIGGGKLMMPIVNAGYVALGWVWLKGPLDGALTTVRCAVDPSLAGPELSGKYWGNMKEETPSELALDPANPPRLWEVTESVLEEKLGKRVDDVV 485
BLAST of mRNA_P-littoralis_Contig88.55.3 vs. uniprot
Match: A0A6H5JP92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP92_9PHAE) HSP 1 Score: 457 bits (1176), Expect = 2.760e-153 Identity = 236/334 (70.66%), Postives = 267/334 (79.94%), Query Frame = 3
Query: 219 FGPS-TTSKLKDVTQDLQGKHYIVTGANTGIGYATARELAKMGAKVTLACRSAERGQQAVDKMKEEALEKPVKEGVDLLEGISDVDVKLEILDLGSLQSVISFAQRFKASGAKADVLINNAGIMAIPERRETVDGFEMQIGVNHFGGHLLTRLMEPMIVDGGRVVFLSSLAHRQPPGKHKITLDFDNVNYEKPDTYDSWMAYGRSKLANILDAKEFSTRLAARGISTYACHPGVVNTELMRNMTDDSLASRIARWA-APLAKYILATPLTGALTTIRCAVDPSLAGPEFSGKYWGNMNEQKPSALALDPANPPRLWEITESMLEAKLGKKVDDL 1214
FG S T K K + QDL+GKH+IVTGANTG+GY TARELAKMGAKVTLACRSAERGQQA+DK+K E LEKP KEGVDLL+G+++VDV+LE+LDLGSL+SVI+FAQ FKASG K DVL+NNAGI +P RRET DG EM IGVNHFGGHLLTRLMEP I DGGRV+FLSSL H +PPG K T D+DN+N++KP TYD AY RSKLANI DAKEF+ RLAAR I+TYA PG+V TE+ R + L I A L L PL GALTTIRCAVDP LAGPE SGKYWGNM E+ PS LALDPANPPRLWEITES+LE KLGK+VDD+
Sbjct: 4 FGDSKATRKAKSLRQDLRGKHFIVTGANTGLGYVTARELAKMGAKVTLACRSAERGQQAIDKLKAEVLEKPAKEGVDLLDGLTEVDVRLEVLDLGSLRSVIAFAQGFKASGTKVDVLVNNAGIFGVPNRRETADGLEMHIGVNHFGGHLLTRLMEPSINDGGRVLFLSSLTHSRPPGMPKTTWDWDNMNFDKPKTYDRLSAYCRSKLANIWDAKEFAKRLAARSINTYAVQPGLVKTEIHRGIGGGKLIMPIVNAGYAALGWVWLKGPLDGALTTIRCAVDPCLAGPELSGKYWGNMKEETPSELALDPANPPRLWEITESVLEDKLGKRVDDV 337
BLAST of mRNA_P-littoralis_Contig88.55.3 vs. uniprot
Match: D7FTL4_ECTSI (Similar to Retinol dehydrogenase 12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTL4_ECTSI) HSP 1 Score: 281 bits (720), Expect = 4.240e-87 Identity = 138/211 (65.40%), Postives = 165/211 (78.20%), Query Frame = 3
Query: 585 MAIPERRETVDGFEMQIGVNHFGGHLLTRLMEPMIVDGGRVVFLSSLAHRQPPGKHKITLDFDNVNYEKPDTYDSWMAYGRSKLANILDAKEFSTRLAARGISTYACHPGVVNTELMRNMTDDSLASRIARWAAPLAKYILATPLTGALTTIRCAVDPSLAGPEFSGKYWGNMNEQKPSALALDPANPPRLWEITESMLEAKLGKKVDDLL 1217
MAIP TVDG E QIGVNHFG HLLTRLME I+DGGRVVFLSS+AH+ D+DNVNY KP+ Y +AYGRSKLAN+LDAK F+ L+ R I+TYA HPGVVNT+L RN+TD L SR+ R A L ++LA+PLTG+LTT+RCA+DP+LAGPEFSGKYW +M + +PSALA DPANPPRLWEITE +LE KLGKK+++LL
Sbjct: 1 MAIPTEERTVDGLEKQIGVNHFGTHLLTRLMEKQIIDGGRVVFLSSVAHKHGG------WDWDNVNYTKPNKYVPMIAYGRSKLANVLDAKAFAGHLSDRRINTYALHPGVVNTDLFRNVTDGRLISRVFRVAKSLGAFVLASPLTGSLTTLRCAIDPALAGPEFSGKYWSHMKQVQPSALASDPANPPRLWEITEELLETKLGKKIENLL 205
BLAST of mRNA_P-littoralis_Contig88.55.3 vs. uniprot
Match: A0A6H5JGN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGN4_9PHAE) HSP 1 Score: 220 bits (561), Expect = 7.800e-64 Identity = 114/178 (64.04%), Postives = 137/178 (76.97%), Query Frame = 3
Query: 438 GVDLLEGISDVDVKLEILDLGSLQSVISFAQRFKASGAKADVLINNAGIMAIPERRETVDGFEMQIGVNHFGGHLLTRLMEPMIVDGGRVVFLSSLAHRQPPGKHKITLDFDNVNYEKPDTYDSWMAYGRSKLANILDAKEFSTRLAARGISTYACHPGVVNTELMRNMTDDSLASRI 971
GVDLLEG+SDVDV++E+LDLG LQSV+SFAQR K+SG K DVLI+NAGIMAIP + +VDG E QIGVNHF HLL+RLM I+DGGRVVF SS+AH+ D+DNVNY KP+ + +AYGRSKLAN+LDAK F+ L+ R I+TYA HPGVVNT+L RN TD L SR+
Sbjct: 29 GVDLLEGLSDVDVQVEVLDLGVLQSVVSFAQRLKSSGQKIDVLIDNAGIMAIPTEKRSVDGLEKQIGVNHFVTHLLSRLMGKQIIDGGRVVFFSSVAHKHGG------CDWDNVNYTKPNEHGPMIAYGRSKLANVLDAKGFAGHLSDRRINTYALHPGVVNTDLFRNATDGRLISRM 200
BLAST of mRNA_P-littoralis_Contig88.55.3 vs. uniprot
Match: A0A6J8C7G3_MYTCO (RDH12 n=3 Tax=Mytilus TaxID=6548 RepID=A0A6J8C7G3_MYTCO) HSP 1 Score: 218 bits (555), Expect = 2.460e-61 Identity = 142/314 (45.22%), Postives = 191/314 (60.83%), Query Frame = 3
Query: 249 DVTQDLQGKHYIVTGANTGIGYATARELAKMGAKVTLACRSAERGQQAVDKMKEEALEKPVKEGVDLLEGISDVDVKLEILDLGSLQSVISFAQRFKASGAKADVLINNAGIMAIPERRETVDGFEMQIGVNHFGGHLLTRLM--EPMIVDGGRVVFLSSLAHRQPPGKHKITLDFDNVNYEKPDTYDSWMAYGRSKLANILDAKEFSTRLAARGISTYACHPGVVNTELMRNMTDDSLASRIARWAAPLAKYILATPLTGALTTIRCAVDPSLAGPEFSGKYWGNMNEQKPSALALDPANPPRLWEITESMLE 1184
+ T L GKH I+TGANTGIG TA +LA GAKVTLACR +R Q A D +K+ + G ++ VK L+L SL+SV SFA+ + + DVLINNAGIM P + T DGFEMQ GVNH G LLT L+ + I RVV +SSLAH + GK ++FD++N EK YD AY +SKLAN+L + E + +L G++TY+ HPGV+NTEL R++T S R + KY++ TP GA TTI CAVD SL+ E +GKY+ + ++ PS AL+ N RLW+++ M++
Sbjct: 41 NTTTRLDGKHVIITGANTGIGKETAIDLANRGAKVTLACRDMKRAQDAADDIKQ-------------ITGNQNIIVKK--LNLASLKSVRSFAEDINKNEKRIDVLINNAGIMRCPYWK-TDDGFEMQFGVNHLGHFLLTNLLLDKLKISAPSRVVTVSSLAHER--GK----MNFDDLNQEK--NYDKGSAYSQSKLANVLFSSELAKKLQGTGVTTYSLHPGVINTELSRHVTQ----SMGWRMLLSVIKYLIKTPNEGAQTTIYCAVDESLS--EETGKYYSDCAKKTPSKEALNDENAKRLWKLSAKMVD 324
BLAST of mRNA_P-littoralis_Contig88.55.3 vs. uniprot
Match: A0A433SZU2_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433SZU2_ELYCH) HSP 1 Score: 210 bits (534), Expect = 2.750e-58 Identity = 128/315 (40.63%), Postives = 184/315 (58.41%), Query Frame = 3
Query: 255 TQDLQGKHYIVTGANTGIGYATARELAKMGAKVTLACRSAERGQQAVDKMKEEALEKPVKEGVDLLEGISDVDVKLEILDLGSLQSVISFAQRFKASGAKADVLINNAGIMAIPERRETVDGFEMQIGVNHFGGHLLTRLMEPMI--VDGGRVVFLSSLAHRQPPGKHKITLDFDNVNYEKPDTYDSWMAYGRSKLANILDAKEFSTRLAARGISTYACHPGVVNTELMRNMTDDSLASRIARWAAPLAKYILATPLTGALTTIRCAVDPSLAGPEFSGKYWGNMNEQKPSALALDPANPPRLWEITESMLEAKL 1193
T+ L+ K ++TGANTG+G TAR+LAK G ++ +ACR+ E+G EA K +++E + DV ++ LDL S +S+ +FA++F + + D+LINNAG+MA P+ T DG EMQIG NHFG LLT L+ + R+V LSS+AH ++ +D++N +K Y W AYG+SKLANIL E S RL G++ + HPG VNT+L R+ I + PL+K TP+ GA TT+ CA+ P L E SGKY+ + E+ PS A+ RLWE+TE +++ KL
Sbjct: 8 TETLELKTVLITGANTGLGKETARDLAKRGGRIIMACRNLEKG---------EATRK------EIVEETKNEDVVVQELDLASFESIQNFAKKFNETETRLDILINNAGVMACPKTL-TKDGLEMQIGTNHFGHFLLTNLLLDKLKACSPSRIVILSSMAHAF------ASIKWDDINSDKK--YGDWAAYGQSKLANILHCLELSNRLKGTGVTVNSVHPGGVNTDLQRHTNRG-----IFKLLKPLSKLFFKTPVDGAQTTLYCALSPDLE--EVSGKYFVDCKEKAPSRRGQSEADAKRLWELTEEIIQQKL 291
BLAST of mRNA_P-littoralis_Contig88.55.3 vs. uniprot
Match: A0A553N7Y6_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553N7Y6_TIGCA) HSP 1 Score: 205 bits (522), Expect = 1.470e-56 Identity = 129/315 (40.95%), Postives = 181/315 (57.46%), Query Frame = 3
Query: 264 LQGKHYIVTGANTGIGYATARELAKMGAKVTLACRSAERGQQAVDKMKEEALEKPVKEGVDLLEGISDVDVKLEILDLGSLQSVISFAQRFKASGAKADVLINNAGIMAIPERRETVDGFEMQIGVNHFGGHLLTRLMEPMIVDGG------RVVFLSSLAHRQPPGKHKITLDFDNVNYEKPDTYDSWMAYGRSKLANILDAKEFSTRLAARGISTYACHPGVVNTELMRNMTDDSLASRIARWAAPLAKYILATPLTGALTTIRCAVDPSLAGPEFSGKYWGNMNEQKPSALALDPANPPRLWEITESMLEAK 1190
L GK ++TGANTGIG ATA +LAK GA+V + CRS E+G +A ++KE + V++ LDL SL+SV A+ AS K D+LINNAG+M P + T DGF+MQ G NH G LLT ++ P+I R++ LSSLAH+ P +++D++NYEK +Y + AY +SKLAN+L AKE + RL+ IS YA HPG V+TEL R+ + A P A + P+ GA TT+ CA+D S+A SGKY+ + E +P + AL + RLW+++E + K
Sbjct: 45 LNGKLVVITGANTGIGKATAEDLAKRGARVIILCRSVEKGDEAAAEIKEN----------------TGGQVEVRRLDLASLKSVRECAEALVASEDKIDILINNAGVMLCPHWK-TEDGFDMQFGTNHLGHFLLTEMLMPLIRKSEASGFHPRIIILSSLAHKGAP------INWDDINYEK--SYSAIAAYAQSKLANVLHAKELAERLSDTEISVYAVHPGAVDTELGRHFYNKWWAKLFK----PCASRLFKQPIHGAQTTLYCALDDSVAND--SGKYYADCRETRPHSRALRKEDQKRLWDLSEKFVGLK 328
BLAST of mRNA_P-littoralis_Contig88.55.3 vs. uniprot
Match: M2Y4X3_GALSU (Protochlorophyllide reductase n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y4X3_GALSU) HSP 1 Score: 197 bits (502), Expect = 1.430e-53 Identity = 126/313 (40.26%), Postives = 173/313 (55.27%), Query Frame = 3
Query: 255 TQDLQGKHYIVTGANTGIGYATARELAKMGAKVTLACRSAERGQQAVDKMKEEALEKPVKEGVDLLEGISDVDVKLEILDLGSLQSVISFAQRFKASGAKADVLINNAGIMAIPERRETVDGFEMQIGVNHFGGHLLTRLMEPMIVDGG--RVVFLSSLAHRQPPGKHKITLDFDNVNYEKPDTYDSWMAYGRSKLANILDAKEFSTRLAARG--ISTYACHPGVVNTELMRNMTDDSLASRIARWAAPLAKYILATPLTGALTTIRCAVDPSLAGPEFSGKYWGNMNEQKPSALALDPANPPRLWEITESML 1181
T +L+GK +VTGANTGIG T +LAKMGA + +ACR + R +A KE+ ++ E +D++ LDL L SV F F ++ D+L NAG+MA+P+R T DGFEMQ GVNH G LLT L+ ++ RV+ +SS H GK +DFDN+ +E+ Y + AYG SKLANIL KE RL + + YA HPG V TEL R + +A P + ++ P GA T IRCA+DPSL + SGKY+ + E PSA A D +LW+++E ++
Sbjct: 49 TVNLKGKVVVVTGANTGIGKETCIQLAKMGATIVMACRDSSRALKA----KEQVVKLSKNEDIDIIR-----------LDLSDLSSVRQFVSDFCKKYSRLDILFCNAGVMALPKRETTKDGFEMQFGVNHLGHFLLTNLLLDRLIASAPSRVIVVSSYGHTF--GK----IDFDNLQWER--NYSGFAAYGASKLANILFVKELDKRLKQQNANVGVYAVHPGAVRTELARYILSSWWKKLLAAPVLPRSYLLMKDPYHGAQTQIRCAIDPSLQ--QSSGKYFADCKETTPSAAARDARVAEKLWQVSEQLV 336
BLAST of mRNA_P-littoralis_Contig88.55.3 vs. uniprot
Match: A0A6V1PTB0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PTB0_HETAK) HSP 1 Score: 195 bits (496), Expect = 2.770e-52 Identity = 135/326 (41.41%), Postives = 175/326 (53.68%), Query Frame = 3
Query: 222 GPSTTSKLKDVTQDLQGKHYIVTGANTGIGYATARELAKMGAKVTLACRSAERGQQAVDKMKEEALEKPVKEGVDLLEGISDVDVKLEILDLGSLQSVISFAQRFKASGAKADVLINNAGIMAIPERRETVDGFEMQIGVNHFGGHLLTRLMEPMIV--DGGRVVFLSSLAHRQPPGKHKITLDFDNVNYEKPDTYDSWMAYGRSKLANILDAKEFSTRLAAR--GISTYACHPGVVNTELMRNMTDDSLASRIARWAAPLAK---YILATPLTGALTTIRCAVDPSLAGPEFSGKYWGNMNEQKPSALALDPANPPRLWEITESM 1178
GP T T DL GK +VTGANTG+G A+A LA++GA+V LACRS E+ + A ++ + V LDL SL SV + A + DVL NNAG+MA+P+R T DGFE Q GVNH G LLT L+ ++ + R+V LSS AH+ PPG T+DF+++ EK Y W AYG+SKLANIL KE RL AR + CHPG V TEL RN+ + WA PL Y + GA T R + DP+L +GKY+ N E +P+ ALD A RLWE++E +
Sbjct: 81 GPQYTG-----TPDLTGKVVVVTGANTGLGKASAARLARLGAEVCLACRSPEKAEAAA---------------AEIRASTGNAAVSTVPLDLASLASVRACAAELGRRYPRIDVLQNNAGVMALPKRTLTTDGFEYQFGVNHLGHFLLTNLLMGSLLKAERPRIVNLSSAAHQIPPG----TVDFEDLMGEKD--YQPWKAYGQSKLANILFTKELQRRLDARTDAATAMCCHPGGVRTELGRNLD-------LPAWALPLLVPLVYFTKSVEQGAQTQTRLSADPALHRVG-AGKYFDNCAEAQPAPPALDAAAARRLWEVSEEL 372 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig88.55.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig88.55.3 >prot_P-littoralis_Contig88.55.3 ID=prot_P-littoralis_Contig88.55.3|Name=mRNA_P-littoralis_Contig88.55.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=339bp MSFIFGPSTTSKLKDVTQDLQGKHYIVTGANTGIGYATARELAKMGAKVTback to top mRNA from alignment at P-littoralis_Contig88:256816..271689- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig88.55.3 ID=mRNA_P-littoralis_Contig88.55.3|Name=mRNA_P-littoralis_Contig88.55.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=14874bp|location=Sequence derived from alignment at P-littoralis_Contig88:256816..271689- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig88:256816..271689- >mRNA_P-littoralis_Contig88.55.3 ID=mRNA_P-littoralis_Contig88.55.3|Name=mRNA_P-littoralis_Contig88.55.3|organism=Pylaiella littoralis U1_48|type=CDS|length=1017bp|location=Sequence derived from alignment at P-littoralis_Contig88:256816..271689- (Pylaiella littoralis U1_48)back to top |