mRNA_P-littoralis_Contig88.42.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig88.42.1
Unique NamemRNA_P-littoralis_Contig88.42.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig88.42.1 vs. uniprot
Match: D8LP30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP30_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.110e-22
Identity = 67/150 (44.67%), Postives = 92/150 (61.33%), Query Frame = 1 
Query:    1 LLGSSLVEPKRGFLGYAR---GMWSSSQPGLRIVLYRRRKVSSAGTATV*PRAVWP----STMESSASAWKR*SIVKAVEAGVKGDKNS-SAASSIPGRGEECLQLLVDYAKQHLQDGEWQRILRMTIVEDEEGPITTILRVCPRLLLQA 426
            LLGS+L +P +GFLG+A    G   S+    R++   R +V +          + P      +E++        IVKAVEAG +G  +S S A    GRG+ECL+LL  YA+QHLQDGEW+RILR+ IV+ +EGPI  IL+VCP+LLLQ+
Sbjct:    2 LLGSNLFQPPKGFLGFALVECGAARSTGCASRLIEDERCRVQALQQCDHERFCLPPWAHLRVLENA--------IVKAVEAGAEGLTSSGSCARLASGRGQECLRLLTSYAQQHLQDGEWRRILRLAIVKGDEGPICAILQVCPKLLLQS 143
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig88.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LP30_ECTSI1.110e-2244.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig88contigP-littoralis_Contig88:201823..203818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size525
Hectar predicted targeting categoryno signal peptide or anchor
Exons4
Cds size174
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791763.7329357-UTR-P-littoralis_Contig88:201822..2019331680791763.7329357-UTR-P-littoralis_Contig88:201822..201933Pylaiella littoralis U1_48UTRP-littoralis_Contig88 201823..201933 +
1680791763.748432-UTR-P-littoralis_Contig88:202511..2027071680791763.748432-UTR-P-littoralis_Contig88:202511..202707Pylaiella littoralis U1_48UTRP-littoralis_Contig88 202512..202707 +
1680791763.7600822-UTR-P-littoralis_Contig88:203300..2033441680791763.7600822-UTR-P-littoralis_Contig88:203300..203344Pylaiella littoralis U1_48UTRP-littoralis_Contig88 203301..203344 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791763.7722747-CDS-P-littoralis_Contig88:203344..2034161680791763.7722747-CDS-P-littoralis_Contig88:203344..203416Pylaiella littoralis U1_48CDSP-littoralis_Contig88 203345..203416 +
1680791763.786647-CDS-P-littoralis_Contig88:203716..2038181680791763.786647-CDS-P-littoralis_Contig88:203716..203818Pylaiella littoralis U1_48CDSP-littoralis_Contig88 203717..203818 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig88.42.1prot_P-littoralis_Contig88.42.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig88 203345..203818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig88.42.1

>prot_P-littoralis_Contig88.42.1 ID=prot_P-littoralis_Contig88.42.1|Name=mRNA_P-littoralis_Contig88.42.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=58bp
MTIVEDEEGPITTILRVCPRLLLQAERLHFCARSKGAATQRTLGYSHLLG
LSLQDVL*
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mRNA from alignment at P-littoralis_Contig88:201823..203818+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig88.42.1 ID=mRNA_P-littoralis_Contig88.42.1|Name=mRNA_P-littoralis_Contig88.42.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1996bp|location=Sequence derived from alignment at P-littoralis_Contig88:201823..203818+ (Pylaiella littoralis U1_48)
TTGTTGGGGAGCAGCCTTGTCGAGCCGAAGAGAGGGTTTCTCGGGTACGC
CCGCGGAATGTGGAGCAGCTCGCAGCCCGGGCTGCGCATCGTGCTTTATC
GACGACGAAAGGTGCAGGATGAAACGCCCAGAGTGCAAATTTATGATGTG
GCGTGTCCGTGCCTCTTAAAGTTCGTTCAGCCGTTATCGTTGTCTTCTTT
GTGTTCTGATGAGCCAAGGTTCGAAGCAGAAGGAGAGTACTTGTGAATCG
CACGAGGATATTATGCTGTACGCGGAAGACAGGGTTTCTGCAATGTTAAA
GATTATAGACGATCGGCGTCAGCGTAAAGAAGTCAAAGTCTTCGCCGTAG
TGTCAAGGTGACTACGACTGGTGTACCCGCTGCCAGAATAAAAAGAAAGG
TGCGCCTGCCGTTCCGCAATACCGAACCAAACGTATTCGTTGTGTTACAT
GCGTCAGTATGAACAAGATGTAGTTTTCAAAAGATGTCGCTCGATCCGCC
AAAAGAAAAGGCTACACGTAATTCGTTAGTACTGCGATGTGCAAGGGGTG
ATGTATTCTGGCCCTCACTGCTCTGGAAAAATAGCGGTGTGCGCCTGTCT
GTCGTTGATGGGACTTTCTCGCCCACGTACTGCTGCTACAGCTACTGCTA
CTGCTGGCGAAAATCGTGTTTCTTCGTTTCTTTTTGCAGGTGTCGAGTGC
AGGCACTGCAACAGTGTGACCACGAGCGGTTTGGCCTTCCACCATGGAGT
CATCTGCAAGTGCTTGGAAACGCTAGTCTATAGTGAAAGCTGTGGAGGCT
GGGGTGAAGGGCGATAAAAACAGCAGTGCTGCTTCGTCAATTCCAGGCCG
TGGCGAGGAGTGCTTGCAGTTGCTGGTAGACTATGGTAAATGAGTAAGCC
CAAACAGGACGGAATGGGGCAAATGATGGCGTTTGACAACCTCCTTGGAG
CTGCCGAGCTGATAACTCAATGAATGGCAGCTTTTCGGCAACTATCGGCT
AAACCTCCGGCAGTCCATGGGTCGTTTCGCTTTGTATACCAAAGGGTCAT
GAATTAGCAGAGTTCGTGTGTGAAAAGCTAGCAGCAGTGGTTTGCGATTT
CCTTGTCTTGCGACCAACCTGTGTACGTTGTACAGTATATGCACGCACGT
TGTTGTGATATCAAGATTATTGAAAGGGTTTAGTAGTACACGTCAACACG
TCTGACGTCCGTGCGCGTATCGGGAACATGTGTTCGTGCCTCTAAGGAGA
TCAAAATATCGGGAGATCATCTCACAGACCGCTCTCTCGCTCGTGTTATG
TTCCTCGTAGGGTGCATGGTTGTCGGTGTCACATATCCATCCCTGTACCG
CCATGTTGCGTGAAATTGAAAACCAGTCGTCCATCAAGCCAACCGTCTTC
ATCAAGGAGTAACCGTTGCCGTTCGTGTTTTCAAACTACATGAAATAATT
CCTGGTTTGTATTTTGTGCTGCTCGCAGCAAAGCAACACCTGCAAGACGG
AGAGTGGCAGAGAATACTACGGATGACGATCGTAGAGGACGAGGAAGGGC
CGATCACCACCATCCTGCGGGTTTGTCCAAGACTCTTGCTGCAGGTCCGA
CCACACGATGGTAGTGATCCTGTGTCCTCGGTTGCGTGGCTTTCCCTTCT
TTGGAGAAGACAGCACAGGAAGATCGATGCATTCTGAATGTGCATGCCAG
CATTACGGGGGAATACTAACCGTCTATAGCTTGTACACTGTCCTCATGTC
CAGCAAAGCACTCAATATCGAAATTACCGGGGTGTTAAGTTCTCGGAACG
TACTAATAATCACACACATAGCTCGCCCTGATATCATCTATCTGCTGCTG
CTGTTGTTGTGCGTTGTTGTTTCCACACCAATATCTTCGCCCAGGCAGAG
CGGCTTCATTTCTGCGCAAGGTCGAAAGGGGCGGCGACGCAACGGACATT
AGGATATTCGCATCTTCTTGGGCTTAGCCTTCAGGACGTGTTGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig88:201823..203818+

>mRNA_P-littoralis_Contig88.42.1 ID=mRNA_P-littoralis_Contig88.42.1|Name=mRNA_P-littoralis_Contig88.42.1|organism=Pylaiella littoralis U1_48|type=CDS|length=174bp|location=Sequence derived from alignment at P-littoralis_Contig88:201823..203818+ (Pylaiella littoralis U1_48)
ATGACGATCGTAGAGGACGAGGAAGGGCCGATCACCACCATCCTGCGGGT
TTGTCCAAGACTCTTGCTGCAGGCAGAGCGGCTTCATTTCTGCGCAAGGT
CGAAAGGGGCGGCGACGCAACGGACATTAGGATATTCGCATCTTCTTGGG
CTTAGCCTTCAGGACGTGTTGTAG
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