mRNA_P-littoralis_Contig88.6.24 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig88.6.24 vs. uniprot
Match: D8LP18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP18_ECTSI) HSP 1 Score: 842 bits (2175), Expect = 3.770e-281 Identity = 630/1180 (53.39%), Postives = 740/1180 (62.71%), Query Frame = 2
Query: 98 AKVAFNRAVAEMGKPQNKKARAXXXXXXXXXXXXXXVAECSLLSSEKLEQDRIVLSDDIAATRMHQLAISLRPLVAGAGAXXXXXAGSTPTLTASRWEVRKAILSLCCTPPAMFEIEATDKSASIRAAFSARAAAEDLSRKLRGVTVKIKGVKLHAFVREVSESSSLCEGENWSSSPMGLKLLKPESESGREQAFSRLEPGRRPDTVVLRGVPANWLGGKGRAAAEGTEAPGLEVIMSRLGPVRAVEVQPSSPGEDTSTPTDGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLENMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGLGQEAMSVGLHVDAWVQFATFRGFQVALEALQGRTLQKVGAELLCEYRLGVDVSGYMTDQRRRERVVARTNKAQEEERRGVAIQKAKGQLVKLREGLQGLRDAAREDGRPAVEDAVAPTIQNVTAHVEKAEALLGVRTAAFIDEPAATAAVSHARGEIAIARLSIRKAGALQDRAEVEERKRLEREKDKELRDAARTTLQELEEALSQALSLVSAEREHPGIKPQADMAVGLLNELSEACSKEGGGSAAFGEEGGGLVADARKATETAITRACMLQRYLGTCARLETLSAAVDAAMEPLLRPADGXXXXXXXXXXXXXXXXXPVAVAAKVTTALDGKADRGKTDSGAGAGGRKVAAGILSEQLDCASEILSRELKGLSEGDLLLIWERAEEALGVADGLLETLRVITAAGNRLADIKAAVASGDLVLKSSEGVMRLVAAAVMSMARAKREG------ASTNGXXXXXXXXXXXXERWRRAAISADSDVTAAMQEVTRVENELRDKRRXXXXXXXXXXXXXXRRLREKEAWRLERXXXXXXXXXXXXXXXXXXXXXXELRRKEMTAQVRNKAARRQLQEQFIAQRTAVDGSGPSAGAKGGTKEGSRGAAEHATXXXXXXXXMEDRWTLEEGLVEVPDDSNGSGAPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGISTHETGINAA------AAADLPLGDDRWDMNDGAADLAEHGVELEMGGAGLYMPXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXXXXXXXEWAEEDDAEASEPSRLVSNKIKQWLELVSKRVRSSVVGGAAAGTWGAEAANEDGDAE 3601
AKV+ NRAVA M ++ A +++RIVLSDD A ++HQLAI+LRPL G G P LTASRWEVRKAI+SLC + P MFEIEATDKSASIR AFSA A A+ LSR LRGVTVKIKGVKLHAFVREVSES++L EGE+W++S +G ++L ++ +GRE AF LEPG+RPDT+VLRG+PANWLG +G+AA EGTEAPGLE IMS+ GPVRAVEVQPS+ XXX XXXXXXXX ALLENMP XXXXXXXXXXXXX LG + +SVGLHVDAWVQFA+F GFQ ALEAL+ +TLQK GAEL+CEYRLGVD SG+MT+ +RRERV+AR KA+EE+RR +I+KA+GQL LREGLQGLRDA EDGRPA+EDA PT+Q VT HVE AEALLGVR A +DEPAATAAV+HARGE+AIARLS+RKA A DRAE EER R+EREKD+ LRDAAR TL +L E+LSQ L+LV+AER+H GIKPQAD A LL+E+SEACSKEGG A G GGLVADAR+ATETAITRACMLQRYLGTCARL+TL A V ++ PADG XXXXXXXXXXXXX ++G +L+ Q++ +LSR+L+GLSEGDLLL+WE AEEALGVADGLLE+L+++ AA +RLAD +AAVA+GD +L+SSEG+MRL+AAAVMS ARA+REG A+ +RWRRAAISADSDV AAM+EV RV ELRDK R XXXX XXXXXXXXXXXXXXXXXX ELRR EM QVRNKAAR++LQEQF AQ+ A D +G K+ S + +HA M DRWTLEEGLV+V D N + + XXXXXXXXXXX +S E A DDRW MNDGAADLAE GVELE GGAGLY+P + + +R + +QWLE+VSKRVRS+VVG A GTWGA A EDG+ +
Sbjct: 2 AKVSLNRAVAGMNASSDRAGGGVLSRTREEAGNGDEEAA-------GWDKERIVLSDDFTAVKLHQLAITLRPLTTGGS-------GGRPMLTASRWEVRKAIMSLCRSQPTMFEIEATDKSASIRVAFSAAADADALSRSLRGVTVKIKGVKLHAFVREVSESAALSEGEDWAASALGSRVLSADTVAGREAAFDSLEPGKRPDTIVLRGIPANWLGSRGKAA-EGTEAPGLEEIMSKFGPVRAVEVQPSAXXXXXXXXXX--XXXXFAGXXXXXXXXQRSSKKSGRPSADFDVNALLENMPKPRALAKDKGGGSKGSGSRPXXXXXXXXXXXXX------------LGGDILSVGLHVDAWVQFASFLGFQGALEALRAKTLQKAGAELVCEYRLGVDASGFMTEDQRRERVIARAEKAREEDRRKASIEKARGQLALLREGLQGLRDAVAEDGRPALEDATKPTLQKVTGHVEGAEALLGVREA-LVDEPAATAAVAHARGEVAIARLSVRKAKAAADRAEEEERIRIEREKDRGLRDAARATLVQLRESLSQGLALVAAERQHRGIKPQADRAAALLDEVSEACSKEGGSEAFGGTAEGGLVADARRATETAITRACMLQRYLGTCARLKTLKATVATTVDH--PPADGGSXXXXXXXXXXXXXN-----------------NKGN---------------LLAAQVEVVETVLSRDLEGLSEGDLLLMWESAEEALGVADGLLESLKLVNAARHRLADTRAAVANGDPLLRSSEGIMRLIAAAVMSTARAQREGVVKHPTAAATAGRHSVTSPAETADRWRRAAISADSDVAAAMREVERVSGELRDKHRREEEEKSWRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILAMELRRNEMAEQVRNKAARKRLQEQFRAQQAARDAAG--------RKKDSGASKKHAESPS-----MADRWTLEEGLVQVADGGNHNSGTLTLTHGIAAAAPAXXXXXXXXXXXKSQGGNNKSERDSAKVSQAEASXXXXXXXXXXAVVPRDPADDRWGMNDGAADLAERGVELEGGGAGLYLPPPLDWPPDVSLLPGGAKGGRRGR----------------------KRNRQARAEKEEAEQWLEMVSKRVRSTVVGAAPPGTWGA-ANEEDGNGD 1081
BLAST of mRNA_P-littoralis_Contig88.6.24 vs. uniprot
Match: A0A6H5JK35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK35_9PHAE) HSP 1 Score: 516 bits (1329), Expect = 8.150e-165 Identity = 352/575 (61.22%), Postives = 410/575 (71.30%), Query Frame = 2
Query: 98 AKVAFNRAVAEMGKPQNKKARAXXXXXXXXXXXXXXVAECSLLSSEKLEQDRIVLSDDIAATRMHQLAISLRPLVAGAGAXXXXXAGSTPTLTASRWEVRKAILSLCCTPPAMFEIEATDKSASIRAAFSARAAAEDLSRKLRGVTVKIKGVKLHAFVREVSESSSLCEGENWSSSPMGLKLLKPESESGREQAFSRLEPGRRPDTVVLRGVPANWLGGKGRAAAEGTEAPGLEVIMSRLGPVRAVEVQPSSPGEDTSTPTDGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLENMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGLGQEAMSVGLHVDAWVQFATFRGFQVALEALQGRTLQKVGAELLCEYRLGVDVSGYMTDQRRRERVVARTNKAQEEERRGVAIQKAKGQLVKLREGLQGLRDAAREDGRPAVEDAVAPTIQNVTAHVEKAEALLGVRTAAFIDEPAATAAVSHARGEIAIARLSIRKAGALQDRAEVEERKRLEREKDKELRDAARTTLQELEEALSQALSLVSAEREHPGIKPQAD 1822
AKV NRAVA M ++ A + +++RIVLS+D A ++HQLAI+LRPL G G P LTASRWEVRKAI+SLC + P MFEIEATDKSASIR AFSA A A+ LSR LRGV+VKIKGVKLHAFVREVSES+ L EGE+W++S G ++L ++ +GRE AF LEPG+RPDT+VLRG+PANWLG +G+AA EGTEAPGLE IMS+ GPVRAVEVQPS+P + + +D XXXXXXXXXXXXXXX ALLENMP XXXXXXXXXXXXXXXXXXXXXXX HVDAWVQFA+F GFQ ALEAL+ +TLQK GAEL+CEYRLGVD SG+MT+ +RRERV+AR KA+EEERR +I+KA+GQL LREGLQGLRDA EDGRPA+EDA PT+Q VT HVE AE LLGVR A +DEPAATAAV+HARGE+AIARLS+RKA A DRAE EER R+EREKD+ LRDAAR TL +L E+LSQ L+LV+AER+H GIKPQAD
Sbjct: 2 AKVTLNRAVAGMKASSDRTGGGIPWRTREGAGNGDEEAA-------EWDKERIVLSNDFTAVKLHQLAITLRPLTTGGS-------GGRPMLTASRWEVRKAIMSLCRSQPTMFEIEATDKSASIRVAFSAAADADALSRSLRGVSVKIKGVKLHAFVREVSESAVLSEGEDWAASTWGSRVLSADTVTGREAAFDSLEPGKRPDTIVLRGIPANWLGSRGKAA-EGTEAPGLEEIMSKFGPVRAVEVQPSAPSDSSIDSSDA-----XXXXXXXXXXXXXXXKKSGRPSADFDVNALLENMPKPRALAKDKGGASKGSGSRPXXXXXXXXXXXXXXXXXXXXXXX------------HVDAWVQFASFWGFQGALEALRAKTLQKAGAELVCEYRLGVDASGFMTEDQRRERVIARAEKAREEERRKASIEKARGQLALLREGLQGLRDAVAEDGRPALEDATKPTLQKVTGHVEGAEELLGVREA-LVDEPAATAAVAHARGEVAIARLSVRKAKAAVDRAEEEERIRIEREKDRGLRDAARATLVQLRESLSQGLALVAAERQHRGIKPQAD 543
BLAST of mRNA_P-littoralis_Contig88.6.24 vs. uniprot
Match: A0A6H5JML1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML1_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 1.250e-17 Identity = 99/259 (38.22%), Postives = 119/259 (45.95%), Query Frame = 2
Query: 2834 AARRQLQEQFIAQRTAVDGSGPSAGAKGGTKEGSRGAAEHATXXXXXXXXMEDRWTLEEGLVEVPDDSNGSGAP-------SSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGISTHETGINAAAAADLPLGDDRWDMNDGAADLAEHGVELEMGGAGLYMPXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXXXXXXXEWAEEDDAEASEPSRLVSNKIKQWLELVSKRVRSSVVGGAAAGTWGAEAANED 3589
AAR++LQEQF AQ+ A + +G K+ S G+ +HA M DRWTLEEGLV+V D N + ++ XXXXXXXXX ++ T + A A GDDRW MNDGAADLAE GVELE GGAGLY+P XXX D +AS V +WLE+VSKRVRS VVG A G+WGA ANED
Sbjct: 9 AARKRLQEQFRAQQAARNAAG--------RKKDSGGSKKHAESPS-----MADRWTLEEGLVQVADGGNHNSGTLALTPGIAAAAPGAXXXXXXXXXPESPGGNNKGEERDSAKVSQADALAAASTAVAATAVVPRDPGDDRWGMNDGAADLAERGVELEGGGAGLYLPPPPDWPPDASLLPDGAKGGRRXXXR------------------DRQASAEKEEV-----EWLEMVSKRVRSKVVGAAPPGSWGA--ANED 229
BLAST of mRNA_P-littoralis_Contig88.6.24 vs. uniprot
Match: A0A7S2HNH6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HNH6_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 1.400e-6 Identity = 43/135 (31.85%), Postives = 62/135 (45.93%), Query Frame = 2
Query: 359 STPTLTASRWEVRKAILSLCCT---PPAMFEIEATDKSASIRAAFSARAAAEDLSRKLRGVTVKIKGVKLHAFVREVSESSSLCE--GENWSSSPMGLKLLKPESESGREQAFSRLEPGRRPDTVVLRGVPANWL 748
ST L + WE++KA+ LC + PP + E A +R F R A L +KL G TV + +L A + L E W + L + + + ++ EPG RPDT+VLRG+PA W
Sbjct: 66 STARLNTTAWELKKALRKLCPSNHNPPLLLEASVGVAQAEMRMTFPDRETARSLQQKLDGTTVTVGRSRLKAQAHLEPPRADLSEIADREWR---VAFGLPPNATTTMVRELWNSSEPGERPDTIVLRGLPAKWF 197 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig88.6.24 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig88.6.24 >prot_P-littoralis_Contig88.6.24 ID=prot_P-littoralis_Contig88.6.24|Name=mRNA_P-littoralis_Contig88.6.24|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1254bp MTEVQLTGVVKTMAAKVAFNRAVAEMGKPQNKKARAAAPPQRHQQQQQQQback to top mRNA from alignment at P-littoralis_Contig88:22753..46977- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig88.6.24 ID=mRNA_P-littoralis_Contig88.6.24|Name=mRNA_P-littoralis_Contig88.6.24|organism=Pylaiella littoralis U1_48|type=mRNA|length=24225bp|location=Sequence derived from alignment at P-littoralis_Contig88:22753..46977- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig88:22753..46977- >mRNA_P-littoralis_Contig88.6.24 ID=mRNA_P-littoralis_Contig88.6.24|Name=mRNA_P-littoralis_Contig88.6.24|organism=Pylaiella littoralis U1_48|type=CDS|length=3762bp|location=Sequence derived from alignment at P-littoralis_Contig88:22753..46977- (Pylaiella littoralis U1_48)back to top |