mRNA_P-littoralis_Contig88.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig88.14.1
Unique NamemRNA_P-littoralis_Contig88.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig88.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig88contigP-littoralis_Contig88:63473..63787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size315
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791761.212362-CDS-P-littoralis_Contig88:63472..637871680791761.212362-CDS-P-littoralis_Contig88:63472..63787Pylaiella littoralis U1_48CDSP-littoralis_Contig88 63473..63787 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig88.14.1prot_P-littoralis_Contig88.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig88 63473..63787 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig88.14.1

>prot_P-littoralis_Contig88.14.1 ID=prot_P-littoralis_Contig88.14.1|Name=mRNA_P-littoralis_Contig88.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
RHSSSSCSETVKVWRRFVIDFVSETKVFCALDSLFFFCHLRVLPVRLVCL
SLCLARLLYPVCICMLCVAYRTLPTSSSHKYHMILRSMIYHMISCNLVTH
FASRG
back to top

mRNA from alignment at P-littoralis_Contig88:63473..63787-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig88.14.1 ID=mRNA_P-littoralis_Contig88.14.1|Name=mRNA_P-littoralis_Contig88.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig88:63473..63787- (Pylaiella littoralis U1_48)
AGGCATTCCTCGAGTTCCTGTAGTGAAACCGTCAAAGTGTGGCGGCGATT
TGTGATCGACTTCGTGTCAGAAACCAAAGTTTTTTGTGCTCTCGACTCTT
TATTTTTTTTCTGTCATCTTCGTGTGCTTCCTGTCCGTCTTGTTTGCCTC
AGCCTCTGCCTCGCCCGTTTACTTTACCCAGTGTGTATATGTATGCTGTG
TGTAGCCTACCGAACCCTACCCACGTCGTCGTCTCATAAGTATCATATGA
TACTCCGGAGTATGATTTATCATATGATATCTTGTAATCTTGTGACGCAT
TTTGCGTCCCGCGGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig88:63473..63787-

>mRNA_P-littoralis_Contig88.14.1 ID=mRNA_P-littoralis_Contig88.14.1|Name=mRNA_P-littoralis_Contig88.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig88:63473..63787- (Pylaiella littoralis U1_48)
AGGCATTCCTCGAGTTCCTGTAGTGAAACCGTCAAAGTGTGGCGGCGATT
TGTGATCGACTTCGTGTCAGAAACCAAAGTTTTTTGTGCTCTCGACTCTT
TATTTTTTTTCTGTCATCTTCGTGTGCTTCCTGTCCGTCTTGTTTGCCTC
AGCCTCTGCCTCGCCCGTTTACTTTACCCAGTGTGTATATGTATGCTGTG
TGTAGCCTACCGAACCCTACCCACGTCGTCGTCTCATAAGTATCATATGA
TACTCCGGAGTATGATTTATCATATGATATCTTGTAATCTTGTGACGCAT
TTTGCGTCCCGCGGG
back to top