mRNA_P-littoralis_Contig879.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig879.4.1
Unique NamemRNA_P-littoralis_Contig879.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig879.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig879contigP-littoralis_Contig879:30048..30863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size321
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_001860.1
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791760.75585-CDS-P-littoralis_Contig879:30047..303201680791760.75585-CDS-P-littoralis_Contig879:30047..30320Pylaiella littoralis U1_48CDSP-littoralis_Contig879 30048..30320 -
1680791760.7700756-CDS-P-littoralis_Contig879:30815..308631680791760.7700756-CDS-P-littoralis_Contig879:30815..30863Pylaiella littoralis U1_48CDSP-littoralis_Contig879 30816..30863 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig879.4.1prot_P-littoralis_Contig879.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig879 30048..30863 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig879.4.1

>prot_P-littoralis_Contig879.4.1 ID=prot_P-littoralis_Contig879.4.1|Name=mRNA_P-littoralis_Contig879.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=107bp
MRCAREQGAGIREAFQAAEALAAREGLLQAANQSLERAREEAEILHKELE
EARAREREAAEAVVEERRAAREKIAELQSAIEKSEREHGLLRERLEIRLE
RLRLAVE
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mRNA from alignment at P-littoralis_Contig879:30048..30863-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig879.4.1 ID=mRNA_P-littoralis_Contig879.4.1|Name=mRNA_P-littoralis_Contig879.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=816bp|location=Sequence derived from alignment at P-littoralis_Contig879:30048..30863- (Pylaiella littoralis U1_48)
ATGCGTTGCGCTCGGGAACAGGGGGCGGGAATAAGGGAGGCGTTTCAGGT
GAGGTGGTTCTTAACTCTTCAAGGCAGAACCACAACCCTTGAGGTATAAT
CGTCTCGAAAAAGATGAACGGGATCTCGAGCTCAGCTGCTGGCAGTAGAC
GCTTCTTCTCAGGCCGTTTTGCTATTGGTGCAGATCTTTTGAGCATCGAA
GTATCGCACGGCGTGACCCCAATGTACAAATGGATAGGGTTGCCCTCATT
TTTGAAGAGCCTTTACTGATATGAGGTGTGTGTTTTGTGTAACTTTGCCT
CTATTGCCAACGTTGGCGGACAGTAGTGTTGGGAAGTGTCGTCGGGCATT
GGTGACGGATGCCGAAGGAAGGGGTCGATACAAATAACACGGGTACGGGC
ACGGGGGTGAAGGGGCTCACGCCGCCGGCGATTGAGACGATGAAACGGGG
ACATAAAAAATTCGAAGCGACGGTACGAGGTGCTGACAACTGAGGACGAG
TTCCTTCCGCCACGTTTTTCCTCTGACACATTGAATGAAACAGGCTGCCG
AAGCGCTCGCAGCCCGGGAAGGCTTGCTCCAAGCAGCAAATCAATCTCTA
GAGCGTGCCAGGGAGGAGGCTGAAATATTGCACAAAGAACTCGAAGAAGC
ACGCGCCCGGGAGAGGGAGGCGGCAGAGGCAGTCGTGGAGGAGAGGCGAG
CGGCACGAGAGAAGATAGCCGAGCTGCAAAGTGCTATCGAAAAATCTGAG
CGGGAGCACGGTTTGCTTCGGGAGCGATTGGAAATACGGCTGGAGCGTCT
GAGGCTAGCCGTCGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig879:30048..30863-

>mRNA_P-littoralis_Contig879.4.1 ID=mRNA_P-littoralis_Contig879.4.1|Name=mRNA_P-littoralis_Contig879.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=321bp|location=Sequence derived from alignment at P-littoralis_Contig879:30048..30863- (Pylaiella littoralis U1_48)
ATGCGTTGCGCTCGGGAACAGGGGGCGGGAATAAGGGAGGCGTTTCAGGC
TGCCGAAGCGCTCGCAGCCCGGGAAGGCTTGCTCCAAGCAGCAAATCAAT
CTCTAGAGCGTGCCAGGGAGGAGGCTGAAATATTGCACAAAGAACTCGAA
GAAGCACGCGCCCGGGAGAGGGAGGCGGCAGAGGCAGTCGTGGAGGAGAG
GCGAGCGGCACGAGAGAAGATAGCCGAGCTGCAAAGTGCTATCGAAAAAT
CTGAGCGGGAGCACGGTTTGCTTCGGGAGCGATTGGAAATACGGCTGGAG
CGTCTGAGGCTAGCCGTCGAG
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