mRNA_P-littoralis_Contig879.2.20 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig879.2.20 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE) HSP 1 Score: 792 bits (2045), Expect = 1.850e-269 Identity = 501/971 (51.60%), Postives = 575/971 (59.22%), Query Frame = 3
Query: 141 MHLFKLILPM-MSVGVALA--TTCSNGIYGLEANGVCCVLECGECGGSGCGSRNGLTKNECCTSTITDSGIYCGDHGAAPCIIQEDSADKTDSTADPTCSNGVSKGDVCCVKECETCGGAGCGSRNGLTGDECCTGAITTANESCDKNSAPCIMQESMDDEDXXXXXXXXXXXXXXXXXXXXNGDVCCVKECETCGGAGCGSRNGLTGDECCTGAITTANKSCDKNSAPCIMEESADDXXXXXXXXXXXXXXXXXCSNGVSKGDVCCVKECETCGGTGCGSRNGLTGDECCTGAITTANESCDTNSAPCIMQEAMDDSGXXXXXXXXXXXXXXXCSNGVSKGDVCCVKECETCGDTGCGSRNGLTGDECCTGDITTANNSCDTNSAPCVMSGAXXXXXXXXXXATNTSMGGEVSTATSCGGVAQGIYCCKAECGEVCGGTGCSSNGDRXXXXXXXXXXXXXGMAPCLMESECISYTVVGHFLYAENGGATDDSGTTFASTCTDTDTVEIDIKKD------GGYCYIRGGGCATLTDIYTAQGGENSDGPLFVLDSNDNFVGGNPTGYWLLARTIKVEQDSLLQIHGSDAKGDADVLRIQSTGSSDYYSLWGHGGSLHFESTKVTSWDTDSGKVQEDWGNERSFIRCISEELEDDPETCDGAAKNDMGECRMDIISSEISHLGWFDAESYGLSWKVRGYCKDESNPEIFDKVQVRGDILDSDIHNLYYGHYTYGHQDGQWLRNKMHDNIQYGFDPHDDSDNLEIAYNTVYNNGNHGIIASKRCNNVLIHDNEVYNGGEGAVGIFLHRSSDKAEVYDNDVHDMEDAGMAIMESMDAHIHDNSFKNVKYGVRLSVGAKGNVVENNVFDGCSDYGLYTYQGSDEPDASESWDGFMVDNEFKNNEFDGGLKVQQATGITITGNTFT--GSDHEYRFEDSSEIVWSGNTVPSDTCFKGDQDADDFEDYDADKMPEFC 3020
MH+FKLILP+ +SVGVA A TTCSNG+ GLE GVCC +ECG CGG+GCGSR GLTK +CCTSTI + C APC+I E+ + ADPTCSNGV+KGD+CC C CGG GC R GL+GDECCT I AN+SCD SAPC+M + D XXXXXXXXXXXXXXXXXXXX C GV+KG CC C TCGGTGCG R GD CCT + S T +PC+M XXXXXXXXXXXXXXX T T DT S V +TATSC GV++G YCC A CG CGG XXXXXXXXXXXXX GG YIRGGGCATLTDIYTAQGG N DGPLFVLDSNDN VGG+PTGYWLL R I VE+ SLLQ+HG DA GDA VLRIQSTGS DYY + GHGGSL F TKVTSWDTD KV ++ ERSFIRC+SEEL D P+TCDG A N MGECRMDII SE+ +G+ AESYG+SWKVRGYC ++ NPE+F++ +VRGDI+DSDI+ +YYGHY++GH G W NKMHDN QYGFDPHDDSDNLEIAYNTV+ NGNHGIIASKRCNNV IH N VY+GGEGAVGIFLHRSSD EV+ N V+DM+DAGMAIMESM AHIHDN+F NVKYG+RLSVGA N+VENN F C YG+YTYQG+D+P+AS+ WDG +VDN F N +GG+K+Q+A GI T N F S EYRFED ++VW+ N VP D C KGD++ D + YD+ +P+ C
Sbjct: 1 MHVFKLILPIILSVGVAHASGTTCSNGLSGLEKGGVCCPVECGTCGGTGCGSRPGLTKYDCCTSTIKEDNHLCSVTKEAPCVIDEE------TEADPTCSNGVAKGDICCSAGCGYCGGTGCAGRGGLSGDECCTSKIAAANKSCDDQSAPCVMSGNSDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSC-----------------------------------------------------------------GGVAKGAYCCNAGCGTCGGTGCGMR----GDGCCTSDAALSLCSV-TGMSPCLMDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTTTTT-------------------------DTTSGTSVAD----------------------ATATSCDGVSKGAYCCNAGCG-TCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGKNYIRGGGCATLTDIYTAQGGHNDDGPLFVLDSNDNVVGGSPTGYWLLMRDIHVEEGSLLQVHGPDAGGDARVLRIQSTGSRDYYEIRGHGGSLSFMDTKVTSWDTDEKKVNTNYKKERSFIRCVSEELADKPDTCDGHAVNHMGECRMDIIRSEMGEMGYDAAESYGISWKVRGYCSEDPNPEVFERTRVRGDIIDSDIYGMYYGHYSFGHDGGIWTGNKMHDNAQYGFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWGNTVYDMKDAGMAIMESMGAHIHDNTFTNVKYGIRLSVGAARNIVENNSFLECDQYGIYTYQGNDKPEASKDWDGLLVDNTFHANTVEGGVKIQKAEGIVFTDNNFYEHSSGEEYRFEDCEDVVWTNNRVPDDICLKGDKNIDYMKSYDS--LPDLC 845
BLAST of mRNA_P-littoralis_Contig879.2.20 vs. uniprot
Match: D8LDB5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB5_ECTSI) HSP 1 Score: 718 bits (1853), Expect = 8.350e-240 Identity = 484/1033 (46.85%), Postives = 561/1033 (54.31%), Query Frame = 3
Query: 141 MHLFKLILPMMSVGVALATTCSNGIYGLEANGVCCVLECGECGGSGCGSRNGLTKNECCTSTITDSGIYCGDHGAAPCIIQEDSADKTDSTADPTCSNGVSKGDVCCVKECETCGGAGCGSRNGLTGDECCTGAITTANESCDKNSAPCIMQESMDDEDXXXXXXXXXXXXXXXXXXXX--------------NGDVCCVKECETCGGAGCGSRNGLTGDECCTGAITTANKSCDKNSAPCIMEESADDXXXXXXXXXXXXXXXXXCSNGVSKGDVCCVKECETCGGTGCGSRNGLTGDECCTGAITTANESCDTNSAPCIMQEAMDDSGXXXXXXXXXXXXXXXCSNGVSKGDVCCVKECETCGDTGCGSRNGLTGDECCTGDITTANNSCD-TNSAPCVMSGAXXXXXXXXXXATNTSMGGE------VSTATSCGGVAQGIYCCKAECGEVCGGTGCSSNGDRXXXXXXXXXXXXX-GMAPCLMESECI---------------------------SYTVVGHFLYAENGGATDDSGTTFAS------------TCTD--TDTVEIDIK--------KDGGYCYIRGGGCATLTDIYTAQGGENSDGPLFVLDSNDNFVGGNPTGYWLLARTIKVEQDSLLQIHGSDAKGDADVLRIQSTGSSDYYSLWGHGGSLHFESTKVTSWDTDSGKVQEDWGNERSFIRCISEELEDDPETCDGAAKNDMGECRMDIISSEISHLGWFDAESYGLSWKVRGYCKDESNPEIFDKVQVRGDILDSDIHNLYYGHYTYGHQDGQWLRNKMHDNIQYGFDPHDDSDNLEIAYNTVYNNGNHGIIASKRCNNVLIHDNEVYNGGEGAVGIFLHRSSDKAEVYDNDVHDMEDAGMAIMESMDAHIHDNSFKNVKYGVRLSVGAKGNVVENNVFDGCSDYGLYTYQGSDEPDASESWDGFMVDNEFKNNEFDGGLKVQQATGITITGNTFT--GSDHEYRFEDSSEIVWSGNTVPSDTCFKGDQDADDFEDYDADKMPEFC 3020
MHLFKLIL +SVGVA GCGSR GLTK +CCTSTI C APC+I E+ + ADPTCSNGV+KGD+CC C CGG+GC R GL+GDECCT I AN+SCD SAPC+M D D XXXXXXXXXXXXXX G CC C TCGG + + CCT + S S PC+M+ XXXXXXXXXXXXXXXXX + A T + + DT S + +GVSKG CC C TCG G G+ CCT D A + C T +PC+M A T+T+ STATSCGGVA G YCC A CG CGGT D GM+PCLME+ S V Y N GA+ + TT TCTD TV I+IK K+GG YIRGGGCATLTDIYTAQGG N DGPLFVLDSNDN VGG+PTGYWLL R I VE+DSLLQ+HG DA GDA VLRIQST S+DYY + GHGGSL F TKVTSWDTD +V ++ ERSF+RC+SEEL D+P+TCDG A N MGECRM VRGDI+DS+I+ +YYGHY++GH G W N+MHDN QYGFDPHDDSDNLEIAYNTV+ NGNHGIIASKRCNNV IH N VY+GGEGAVGIFLHRSSD EV++N V+DMEDAGMAIMESM AHI+DN+F NVKYG+RLSVGA NVVENN F C YG+YTYQG+DEP+AS+ WDG +VDN F N +GG+K+Q+A GI T N F S EYRFED ++VW+ N VP C KGD + D F+ YD+ +P+ C
Sbjct: 1 MHLFKLIL--LSVGVA----------------------------RGCGSRPGLTKYDCCTSTIKADNHLCSVTQEAPCVIDEE------TEADPTCSNGVAKGDICCSAGCGYCGGSGCSGRGGLSGDECCTSTIAAANKSCDDQSAPCVMSGGSDLGDTAGQTTXXXXXXXXXXXXXXXXXXSTATSCGGVAKGAFCCNAGCGTCGG----TXXXXXXEGCCTSDAAESLCSATGKS-PCLMDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSA------------------STATTITDTTTDTTSGISVADATATSC------------------DGVSKGAYCCNAGCGTCG----GXXXXXXGEGCCTSDA--ALSLCSVTGKSPCLMDSAIPATTTDIIDNTDTTXXXXXXXXXVASTATSCGGVASGYYCCNAGCG-TCGGTXXXXXXDGCCASDAALSLCSATGMSPCLMETSSTXXXXXXXXXXXXXXXXXXXGSVAXXXTSCGGVAKGAYCCNAGASTTTTTTVDGXXXXXXXXXXXXTCTDYSKSTVTIEIKNNVQTSSKKNGGKNYIRGGGCATLTDIYTAQGGHNDDGPLFVLDSNDNVVGGSPTGYWLLMRDIHVEEDSLLQVHGPDAGGDARVLRIQSTASNDYYEIRGHGGSLSFMDTKVTSWDTDEKEVNTNYNKERSFVRCVSEELADNPDTCDGHAVNHMGECRM-----------------------------------------VRGDIIDSNIYGMYYGHYSFGHDGGIWTGNQMHDNAQYGFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWENTVYDMEDAGMAIMESMGAHIYDNTFTNVKYGIRLSVGASRNVVENNKFSECDQYGIYTYQGNDEPEASKDWDGLLVDNTFHANTVEGGVKIQKAEGIAFTDNKFYEHSSGEEYRFEDCEDVVWTNNLVPDGICLKGDDNTDYFKSYDS--LPDTC 906
BLAST of mRNA_P-littoralis_Contig879.2.20 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI) HSP 1 Score: 550 bits (1418), Expect = 5.310e-176 Identity = 370/859 (43.07%), Postives = 467/859 (54.37%), Query Frame = 3
Query: 423 TCSNGVSKGDVCCVKECETCGGAGCGSR-NGLTGDECCTGAITTANESCDKNSAPCIMQESMDDEDXXXXXXXXXXXXXXXXXXXXNGDVCCVKECETCGGAGCGSRNGLTGDECCTGAITTANKSCDKNSAPCIMEESADDXXXXXXXXXXXXXXXXXCSNGVSKGDVCCVKECETCGGTGCGSRNG-LTGDECCTGAITTANESCDTNSAPCIMQ-EAMDDSGXXXXXXXXXXXXXXXCSNGVSKGDVCCVKECETCGDTGCGSRNG-LTGDECCTGDITTANNSCD-TNSAPCVMSGAXXXXXXXXXXATNTSMGGEVSTATSCGGVAQGIYCCKAECGEVCGGTGCSS-----NGDRXXXXXXXXXXXXXGMAPCLMESECISYTVVGHFLYAENGGATDDSGT--TFASTCTDTDTVEIDIKKDGGYCYIRGGGCATLTDIYTAQGGENSDGPLFVLDSNDNFVGG-----NPTGYWLLARTIKVEQDSLLQIHGSDAKGDADVLRIQSTGSSDYYSLWGHGGSLHFESTKVTSWDTDSGKVQEDWGNERSFIRCISEELEDDPETCDGAAKNDMGECRMDIISSEISHLGWFDAESYGLSWKVRGYCKDESNPEIFDKVQVRGDILDSDIHNLYYGHYTYGHQDGQWLRNKMHDNIQYGFDPHDDSDNLEIAYNTVYNNGNHGIIASKRCNNVLIHDNEVYNGGEGAVGIFLHRSSDKAEVYDNDVHDMEDAGMAIMESMDAHIHDNSFKNVKYGVRLSVGAKGNVVENNVFDGCSDYGLYTYQGSDEPDASESWDGFMVDNEFKNNEF---DGGLKVQQATGITITGNTFTGSDHEYRFEDSSEIVWSGNTV 2939
TC +G+ KG CC CE CGG+GC R +GLTG +CCT I A ++C SAPC+++E GDVCC EC TCGG+GCGSR GLT +ECCT I AN C SAPC+++ D XXXXXXXX C +GV KGD CC C CGG+GC R G LTG +CCT I +N T +APCI+ + XXXXXXXXXXX +GV KGD CC C CG +GC R G LTG +CCT DI+ N C T +APC++ G T S + +C GV +G YCC A CGE CGG G G APC+++ + T T AS T +D+ GGGCATLTD+Y Q G GPL+VLDS++N V G +PTGYWLL ++++ L +HG+ A GDADVLRIQST D++ + G GGSL F T VTSWDTD G+ + ++ RSFI C+++ + D +C G + + GECRMDII S + ++GWFDAESYGL+WKVRG C D SN EI D V GDI S+I+ +YYG Y+YGHQ G W N M DNI YGFDPHDDSD+L IA NTVY NGNHGIIASKRCNNV I+ A+MES A I+DN+ +N KYG+RLS+G+ N + +N FD S YGLYTY+GSD+PD S + DG + DN F N D +K+++ + T N F + + FEDS++ VW+ N +
Sbjct: 20 TC-DGILKGIYCCSAGCEECGGSGCSDRGDGLTGADCCTSDILAAGKAC--GSAPCLLEEGSS----------PTPASSGGCDGILQGDVCCSAECGTCGGSGCGSRAGLTANECCTSTIAAANVPC--GSAPCVVDG---DTSPTXXXXXXXXSGSFTC-DGVLKGDYCCSAGCVECGGSGCSDRGGGLTGADCCTSDI--SNLCSVTGAAPCIVDGDTSPTXXXXXXXXXXXXXSGSFTCDGVLKGDYCCSAGCVECGGSGCSDRGGGLTGADCCTSDIS---NLCSVTGAAPCIVDGDTSP--------TXXXXXXXXSGSFTCDGVLKGDYCCSAGCGE-CGGXXXXXXXXGLTGADCCTSDISNLCSVTGAAPCIVDGDSTGPTPTPXXXXXXXXXXXXXXXXXGTIASISTSSDSSSFS-----------GGGCATLTDMYNTQSGS---GPLYVLDSSNNIVSGGGGSASPTGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQST-DDDFWEIRGWGGSLSFLETTVTSWDTDKGEERTEYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCSDLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSYGHQGGVWTDNVMRDNILYGFDPHDDSDDLTIAGNTVYGNGNHGIIASKRCNNVEIYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXALMESFRAEIYDNTIENCKYGIRLSLGSADNDIHDNTFDSSSTYGLYTYKGSDDPDVSGN-DGRVKDNSFDANTISNTDVAMKIKEGDDNSFTNNVFE-NVKTFEFEDSTDTVWTNNDI 826
BLAST of mRNA_P-littoralis_Contig879.2.20 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI) HSP 1 Score: 476 bits (1224), Expect = 2.600e-150 Identity = 253/467 (54.18%), Postives = 319/467 (68.31%), Query Frame = 3
Query: 1605 DSGTTFASTCTDTDTVEIDIKKDGGYCYIRGGGCATLTDIYTAQGGENSDGPLFVLDSNDNFVGGNPTGYWLLARTIKVEQDSLLQIHGSDAKGDADVLRIQSTGSSDYYSLWGHGGSLHFESTKVTSWDTDSGKVQEDWGNERSFIRCISEELEDDPETCDGAAKNDMGECRMDIISSEISHLGWFDAESYGLSWKVRGYCKDES------NPEIFDKVQVRGDILDSDIHNLYYGHYTYGHQDGQWLRNKMHDNIQYGFDPHDDSDNLEIAYNTVYNNGNHGIIASKRCNNVLIHDNEVYNGGEGAVGIFLHRSSDKAEVYDNDVHDMEDAGMAIMESMDAHIHDNSFKNVKYGVRLSVGAKGNVVENNVFDGCSDYGLYTYQGSDEPDASESWDGFMVDNEFKNN--EFDG---GLKVQQATGITITGNTFTGSDHEYRFEDSSEIVWSGNTVPSDTCFKGDQD 2972
+S T S T D+ ++ Y GGGC TLT +Y AQ G DGPL+VLD N++ VGG PTGYWLL R ++V S L +HG+ A GDADVLR+ ST S D+ + G+GG+LHF+ST VTSWDTD+G+ +E G+ RSFI C+++ + CDG + + GECRMDIISS + ++GWFDAESYGL+WKVRG C+ + N EIF+ V GDIL+S+I+ +YYGHY+YGHQ G W N M DNIQYGFDPHDDSD+L I+ N VY NGNHGIIASKRCNNV I +NEVY+GGE AVGIFLHRSSD AEV+DN V++M+DAGMA+MES DA+I+DNSF N +YG+RLS+G+ N++ NN+F G + YGLYTY GSD+PD S +G DN F N E DG G+ +++ N FTG Y FEDSS+ W NT C G D
Sbjct: 166 ESTTPTPSATTSCDSAAT-VRFTDDIAYFEGGGCGTLTQMYEAQEG---DGPLYVLDENNDVVGGTPTGYWLLDRNLRVVDGSTLLVHGTAASGDADVLRLLST-SDDFIEVRGYGGNLHFQSTTVTSWDTDNGQEREWDGDGRSFINCVTQFDDSAIWDCDGRSNQEWGECRMDIISSTMGNMGWFDAESYGLTWKVRGACEIDPDTGVPYNHEIFEDHNVYGDILNSEIYGMYYGHYSYGHQGGVWDSNIMRDNIQYGFDPHDDSDDLTISNNIVYGNGNHGIIASKRCNNVKIFNNEVYDGGEDAVGIFLHRSSDGAEVHDNVVYNMQDAGMAMMESYDANIYDNSFTNCRYGIRLSLGSGRNIITNNLFSGITQYGLYTYMGSDDPDVPNS-NGRPSDNVFDGNTIETDGDNIGVHIKEGDSNVFIDNVFTGVS-TYEFEDSSDTTWVDNTGGG--CLDGSTD 623
BLAST of mRNA_P-littoralis_Contig879.2.20 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI) HSP 1 Score: 457 bits (1175), Expect = 5.640e-140 Identity = 384/970 (39.59%), Postives = 492/970 (50.72%), Query Frame = 3
Query: 141 MHLFKLILPMMSVGVALATTCSNGIYGLEANGVCCVLECGECGGSGCGSRNGLTKN-ECCTSTITDSGIYCGDHGAAPCIIQEDSADKTDST----------ADPTCSNGVSKGDVCCVKECETCGGAGCGSRNGLTGDECCTGAITTANESCDKNSAPCIMQESMDDEDXXXXXXXXXXXXXXXXXXXXNGDVCCVKECETCGGAGCGSRNGLTGDECCT--GAITTANKSCDKNSAPCIMEESADDXXXXXXXXXXXXXXXXXCSNGVSKGDVCCVKECE-TCGGTGCGSRNGLTGDECCTGAITTANESCDTNSAPCIMQEAMDDSGXXXXXXXXXXXXXXXCSNGVSKGDVCCVKECETCGDTGCGSRNGLTGDECCTGDITTANNSCDTNSAPCVMSGAXXXXXXXXXXATNTSMGGEVSTATSCGGVAQGIYCCKAECGEVCGGTGCSSNGDRXXXXXXXXXXXXXGMAPCLME--SECISYTVVGHFLYAENGGATDDSGTTFASTCTDTDTVEIDIKKDGGYCYIRGGGCATLTDIYTAQGGEN---SDGPLFVLDSNDNF--VGGNPTGYWLLARTIKVEQDSLLQIHGSDAKGDADVLRIQSTGSSDYYSLWGHGGSLHFESTKVTSWDTDSGKVQEDWGNERSFIRCISEELEDDPETCDGAAKNDMGECRMDIISSEISHLGWFDAESYGLSWKVRGYCKDESNPEIFDKVQVRGDILDSDIHNLYYGHYTYGHQDGQWLRNKMHDNIQYGFDPHDDSDNLEIAYNTVYNNGNHGIIASKRCNNVLIHDNEVYNGGEGAVGIFLHRSSDKAEVYDNDVHDMEDAGMAIMESMDAHIHDNSFKNVKYGVRLSVGAKGNVVENNVFDGCSDYGLYTYQGSDEPDASESWDGFMVDNEFKNNEFDG---GLKVQQATGITITGNTFTGSDHEYRFEDSSEIVWSGNTVPSDTCFKGDQDAD 2978
MHL KL+LP++S+ A TC G+ +CC CGECGG +CC S I + + CG +APCI+ + +C +G+ +GDVCCV ECETCGG+GC SRN I A SC APCI+ D+ XXXXXXXXXXXXXXXXX + C V + L+GD + +TTA AD S+G + ++ ++CE C G E C G+ + E D XXXXXXXXXXXXXX S G D + GD+ + +T C D + T A + A+N M ++ +CGG I E G XXXXXXXXXXXXX LME S C F YA + G G Y G GC T+TD+Y +G EN S GP+++LD + + T WLLA + + + G+ A GD + LRIQSTGS D++ + GHGGSL+FE T VTSWDT + + QE + N RSF+ C+SE+L D C+G AKN+MGECRMDII+SEI++LG+FD+ESYG++WKVRG+CKD SNPE+F+ V GD+ SDIH+LYYGHY+YGHQ G W NKMHDN QYGFDPHDDSD L IAYN VYNN NHGIIASKRCNNV I +NEV +GG A GIFLHRSSD A V+DN + +M+DAG+A++ES DA I+ N KYG+R+S+G+ N V N F S YGLYTY+GSDEPD S DG N N + G+K+++ NTF D + F +S+ +WSGN + D C + D + D
Sbjct: 1 MHLLKLLLPVLSISFVAAQTCD----GILKGDICCSAGCGECGGXXXXXXXXXXXXXDCCHSDIIAANVPCG---SAPCILGASXXXXXXXXXXXXXXXPDGSSGSCDDGILQGDVCCVAECETCGGSGCSSRNXXXXXXXXXXXIKAAGVSC--GEAPCIVT----DDSPSXXXXXXXXXXXXXXXXXYSFAGCYVDSPDRV----------LSGDSMMSVNSVMTTAY--------------CADFCEGSDYFGVQFGYECFCSSSGDTPDELGESEDCEMACSGDS---------SEICGGSYAIQ------------VYEYSDXXXXXXXXXXXXXXXXXYESVGCFVDDS---SDRVLSGDSMLSINSVMTAAYCA--DFCEGSTYFGTEYAFECFCSSSGDSPDELGEASNCDMTCSGDSSETCGGF-NAIQVYMLEDGPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLMEISSSCGDDEDRPSFRYAASSGV-------------------------AGRLYAEGEGCFTMTDLYNFRGTENDGSSKGPVYMLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDD--CEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDLSNPEVFELTNVYGDLTGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTIAYNEVYNNVNHGIIASKRCNNVKIFENEVRDGGAAAAGIFLHRSSDGAAVFDNTITNMQDAGIAMLESFDAQIYGNIINGAKYGIRMSLGSGNNEVYQNSFTDISQYGLYTYEGSDEPDVS---DGRPSGNVLALNLVEDCPIGVKIKEGDDNEFYQNTFINVD-AFEFPESTNTMWSGNDI-GDGCIEEDDEFD 874
BLAST of mRNA_P-littoralis_Contig879.2.20 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE) HSP 1 Score: 431 bits (1108), Expect = 1.100e-135 Identity = 225/435 (51.72%), Postives = 292/435 (67.13%), Query Frame = 3
Query: 1701 GCATLTDIYTAQGGEN---SDGPLFVLDSNDNFVGG--NPTGYWLLARTIKVEQDSLLQIHGSDAKGDADVLRIQSTGSSDYYSLWGHGGSLHFESTKVTSWDTDSGKVQEDWGNERSFIRCISEELEDDPETCDGAAKNDMGECRMDIISSEISHLGWFDAESYGLSWKVR---------GYCKDESNPEIFDKVQVRGDILDSDIHNLYYGHYTYGHQDGQWLRNKMHDNIQYGFDPHDDSDNLEIAYNTVYNNGNHGIIASKRCNNVLIHDNEVYNGGEGAVGIFLHRSSDKAEVYDNDVHDMEDAGMAIMESMDAHIHDNSFKNVKYGVRLSVGAKGNVVENNVFDGCSDYGLYTYQGSDEPDASESWDGFMVDNEFKNNEFD---GGLKVQQATGITITGNTFTGSDHEYRFEDSSEIVWSGNTVPSDTC 2954
GC TLTD+Y +G EN S GPL++LD + + + + T WLL + V ++ GS+ GD D LRIQSTG D+Y + GHGGS++F T VTSWDT + + QE + RSF+ C+SE+L ETCDG AKNDMGECRMDII+SE+ ++G+FD+ESYGL+WKVR G+CKD SNP++F+ V GDI +SDIH++YYGHY+YGHQ G W N+MHDN QY +A N VYNN NHGIIASKRCNNV I+DN+V +GG AVGIFLHRSSD AEVY N + +M DAG+A++ES +A IHDN V++G+R+S+G+ GN V +N F+ CSD+GLYTY GSDEPD S G N F NN+ GG+K + + I +T N FTG++ E F D+ WSGN++PS C
Sbjct: 21 GCFTLTDLYNFRGTENDGSSKGPLYMLDGSGSKITAPTSVTKKWLLEAELYVTNGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTG--ETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDLSNPDVFETTNVYGDIKNSDIHHMYYGHYSYGHQGGVWTNNEMHDNHQY------------VANNKVYNNYNHGIIASKRCNNVKIYDNQVSDGGPDAVGIFLHRSSDNAEVYGNKIWNMPDAGIALLESFNADIHDNEIDGVQFGIRMSLGSGGNSVYDNEFNDCSDWGLYTYMGSDEPDVSN---GRPNGNTFNNNKVTNSAGGVKFKNSDNIVVTNNEFTGTE-ELEFYDAQATTWSGNSLPSGVC 437
BLAST of mRNA_P-littoralis_Contig879.2.20 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI) HSP 1 Score: 425 bits (1093), Expect = 9.340e-134 Identity = 225/443 (50.79%), Postives = 294/443 (66.37%), Query Frame = 3
Query: 1656 IDIKKDGGYCYIRGGGCATLTDIYTAQG---GENSDGPLFVLDSNDNF--VGGNPTGYWLLARTIKVEQDSLLQIHGSDAKGDADVLRIQSTGSSDYYSLWGHGGSLHFESTKVTSWDTDSGKVQEDWGNERSFIRCISEELEDDPETCDGAAKNDMGECRMDIISSEISHLGWFDAESYGLSWKVRGYCKDESNPEIFDKVQVRGDILDSDIHNLYYGHYTYGHQDGQWLRNKMHDNIQYGFDPHDDSDNLEIAYNTVYNNGNHGIIASKRCNNVLIHDNEVYNGGEGAVGIFLHRSSDKAEVYDNDVHDMEDAGMAIMESMDAHIHDNSFKNVKYGVRLSVGAKGNVVENNVFDGCSDYGLYTYQGSDEPDASESWDGFMVDNEFKNNEFDG---GLKVQQATGITITGNTFTGSDHEYRFEDSSEIVWSGNTVPSDTCFK 2960
ID + DGG GC TL+D+Y QG NS GP+FVLDSND TG WLL + V + L G G+ LRI+ST SD++ + GHGG+L+FE T VTSWD D K QE + + RSFIRC+SE L + +TC A N+MGECRMDII SE+ +LG+ +E+YG++WKVRG+C D SNP++FD V V GD+ SDIH++YYG Y++GHQ G W N MHDN QYGFDPHDDSD L IA N VYNN NHGIIASKRCNNV I+DNEVY+GG A GIFLHRS D +EVY N + +M DAG+A++E+ IHDN ++G+R+ +G+ N V +NVF + G++TY GSDEP G DNEF NN G+K++++ I+IT N F+G+ E F ++ +IVWSGN++P++TC +
Sbjct: 2 IDAEGDGG-------GCFTLSDLYAWQGFYNNGNSKGPVFVLDSNDRVDETATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGE-DTC---AINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDDVNVYGDMKGSDIHHMYYGMYSFGHQGGVWTNNLMHDNHQYGFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCDIHDNQVDGGEFGIRVHLGSSNNKVHDNVFKNIWNVGMFTYVGSDEPWVGG---GRPCDNEFYNNTIQATETGVKIKESDNISITNNAFSGTT-EIEFNNAIDIVWSGNSIPTNTCLE 429
BLAST of mRNA_P-littoralis_Contig879.2.20 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI) HSP 1 Score: 419 bits (1077), Expect = 1.700e-130 Identity = 228/442 (51.58%), Postives = 283/442 (64.03%), Query Frame = 3
Query: 1698 GGCATLTDIYTAQGGENSDGPLFVLDSNDNFVGGNPTGYWLLARTIKVEQDSLLQIHGSDAKGDADVLRIQSTGSSDYYSLWGHGGSLHFESTKVTSWDTDSGKVQEDWGNERSFIRCISEELEDDPETCDGAAKNDMGECRMDIISSEISHLGWFDAESYGLSWKVRGYCKDESNPEIFDKVQVRGDILDSDIHNLYYGHYTYGHQDGQWLRNKMHDNIQYGFDPHDDSDNLEIAYNTVYNNGNHGIIASKRCNNVLIHDNEVYNGGEGAVGIFLHRSSDKAEVYDNDVHDMEDAGMAIMESMDAHIHDNSFKNVKYGVRLSVGAKGNVVENNVFDGCSDYGLYTYQGSDEPDASESWDGFMVDNEFKNNEFDGG---LKVQQATGITITGNTFTGSDHE---YRFEDSSEIVWSGNT----------VPSDTCFKGDQDA 2975
GGCATL I+ ++ G+ PL+ +D + V TG WLL + VE L+++G+D GDAD LR+ ST S Y +L HGGSL F TKV SWDT + ED + RS+I +SE + D+ ETC+G AKN MGE RMDI +SEI +LG+ D+ESYGL+WKVRG+CKD+SNPEIFD V V G++ DSDIH+L +G YTYGHQ G W RNKMHDN YGFDPHDDSD L I N VYNNG HGIIASKRCN V I NEVY G E + GIFLHRSSD A V N VHD DAG+A++ES +A + +N+F+N KYGVR+SVG NV N+ S Y YTY GSDEPD S G +N F N F G +K+++A G N F D + RF+D+ V GNT V +D+CF G+ D+
Sbjct: 71 GGCATLGQIWESRAGK---APLYAVDPDSGDVSETETGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLST-SETYINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRMSVGCADNVFSENIISNNSKYNAYTYLGSDEPDVVSS--GRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDDAMNSVMQGNTGLDEGDFELKVTNDSCFDGESDS 506
BLAST of mRNA_P-littoralis_Contig879.2.20 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI) HSP 1 Score: 419 bits (1076), Expect = 2.080e-130 Identity = 224/442 (50.68%), Postives = 288/442 (65.16%), Query Frame = 3
Query: 1698 GGCATLTDIYTAQGGENSDGPLFVLDSNDNFVGGNPTGYWLLARTIKVEQDSLLQIHGSDAKGDADVLRIQSTGSSDYYSLWGHGGSLHFESTKVTSWDTDSGKVQEDWGNERSFIRCISEELEDDPETCDGAAKNDMGECRMDIISSEISHLGWFDAESYGLSWKVRGYCKDESNPEIFDKVQVRGDILDSDIHNLYYGHYTYGHQDGQWLRNKMHDNIQYGFDPHDDSDNLEIAYNTVYNNGNHGIIASKRCNNVLIHDNEVYNGGEGAVGIFLHRSSDKAEVYDNDVHDMEDAGMAIMESMDAHIHDNSFKNVKYGVRLSVGAKGNVVENNVFDGCSDYGLYTYQGSDEPDASESWDGFMVDNEFKNNEFDGG---LKVQQATGITITGNTFTGSDHE---YRFEDSSEIVWSGNT----------VPSDTCFKGDQDA 2975
GGC TL I+ ++ G+ GPL+ +D + V + TG WLL + VE L+++GS+A GDAD LR+ ST + + +L HGGSL F STKV SWDT + ED + RS+I ISE + D+ ETC+G AKN MGE RMDI SSEI +LG++D+ESYGL+WKVRG+C+D+SNPE+FD V V G++ DSDIH++ +G YTYGHQ G W RNKMHDN YGFDPHDDSD L I N VYNNG HGIIASKRCN V I NEVY G E + GIFLHRSSD A V N VHD DAG+A++ES +A + +N+F+N KYGVR SVG NV NN ++Y Y+Y G+DEPD S G +N F N F G +K+++A G N F D + RF++++E + GNT V +D CF G+ D+
Sbjct: 67 GGCVTLGQIWESRAGK---GPLYAVDPDSGNVSTSATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNET-FINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRFSVGCADNVFSNNTISNNAEYNAYSYLGTDEPDVVSS--GRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDNATENLMQGNTGLDDGEFELKVDNDACFDGEADS 502
BLAST of mRNA_P-littoralis_Contig879.2.20 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI) HSP 1 Score: 419 bits (1077), Expect = 2.410e-130 Identity = 244/531 (45.95%), Postives = 314/531 (59.13%), Query Frame = 3
Query: 1392 GVAQGIYCCKAECGEVCGGTGCSSNGDRXXXXXXXXXXXXXGMAPCLMESECISYTVVGHFLYAENGGATDDSGTTFASTCTDTDTVEIDIKKDGGYCYIRGGGCATLTDIYT--AQGGENSDGPLFVLDSNDNFVGGNP---TGYWLLARTIKVEQDSLLQIHGSDAKGDADVLRIQSTGSSDYYSLWGHGGSLHFESTKVTSWDTDSGKVQEDWGNERSFIRCISEELEDDPETCDGAAKNDMGECRMDIISSEISHLGWFDAESYGLSWKVRGYCKDESNPEIFDKVQVRGDILDSDIHNLYYGHYTYGHQDGQWLRNKMHDNIQYGFDPHDDSDNLEIAYNTVYNNGNHGIIASKRCNNVLIHDNEVYNGGEGAVGIFLHRSSDKAEVYDNDVHDMEDAGMAIMESMDAHIHDNSFKNVKYGVRLSVGAKGNVVENNVFDGCSDYGLYTYQGSDEPDASESWDGFMVDNEFKNNEF---DGGLKVQQATGITITGNTFTGSDHEYRFEDSSEIVWSGNTVPSDTCFK 2960
GV CC +CG CGG+ C G G A C C +Y L +EN ++ C D G G GC T+TD+Y + ++ GP+F LD + N V NP + WLL + + ++ GS GD D LRIQSTG +D++ + HGGS++FEST VTSWDT + Q + RSF+ C+SE+L E C G A+N+MGECRMDII+SEI +LG+FD+ESYGL+WKVRG+CKD SNP++FD V G+++ SDIH+ YYG Y+YGHQ G W N+MHDN QYGFDPHDDSD L IIASKRCNNV I++NEVY+GG A GIFLHRSSD A V+DN VHDM+DAGMA++ESM+A I++N F +VK+G+RLS+G+ N V N+F+ S GLYTYQGSDEP S DG DN F+NN G+K+++ IT N FTG+ E F D+ W GNT+P C K
Sbjct: 18 GVQSENICCHVDCG-TCGGSECRRRGK------------GLGAADC-----CRNYISKNGALCSEN----------LSAPCIMDDVT-------GNTPDAEGEGCFTITDLYNFRLESDGSAKGPIFNLDDSYNTVL-NPKVLSNKWLLTAELHITGGAVFYCRGSSIGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTG--EVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKDLSNPDVFDTTNVYGNLIGSDIHHNYYGQYSYGHQGGVWHNNQMHDNHQYGFDPHDDSDYLT------------SIIASKRCNNVQIYNNEVYDGGPFAAGIFLHRSSDYAIVHDNVVHDMQDAGMAMLESMNADIYNNRFSSVKFGIRLSLGSSENHVHENLFEDVSTQGLYTYQGSDEPTDGVS-DGRPSDNLFENNRILNVTKGVKIKEGDDTVITDNVFTGTS-ELEFFDAQNTRWKGNTLPQGVCIK 496 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig879.2.20 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig879.2.20 >prot_P-littoralis_Contig879.2.20 ID=prot_P-littoralis_Contig879.2.20|Name=mRNA_P-littoralis_Contig879.2.20|organism=Pylaiella littoralis U1_48|type=polypeptide|length=961bp MHLFKLILPMMSVGVALATTCSNGIYGLEANGVCCVLECGECGGSGCGSRback to top mRNA from alignment at P-littoralis_Contig879:3867..16989- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig879.2.20 ID=mRNA_P-littoralis_Contig879.2.20|Name=mRNA_P-littoralis_Contig879.2.20|organism=Pylaiella littoralis U1_48|type=mRNA|length=13123bp|location=Sequence derived from alignment at P-littoralis_Contig879:3867..16989- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig879:3867..16989- >mRNA_P-littoralis_Contig879.2.20 ID=mRNA_P-littoralis_Contig879.2.20|Name=mRNA_P-littoralis_Contig879.2.20|organism=Pylaiella littoralis U1_48|type=CDS|length=2883bp|location=Sequence derived from alignment at P-littoralis_Contig879:3867..16989- (Pylaiella littoralis U1_48)back to top |