mRNA_P-littoralis_Contig1204.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1204.1.1
Unique NamemRNA_P-littoralis_Contig1204.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1204.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1204contigP-littoralis_Contig1204:15640..19426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1242
Hectar predicted targeting categoryother localisation
Exons5
Cds size357
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1204.1.1prot_P-littoralis_Contig1204.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1204 16569..16925 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789516.5354567-UTR-P-littoralis_Contig1204:15639..156901680789516.5354567-UTR-P-littoralis_Contig1204:15639..15690Pylaiella littoralis U1_48UTRP-littoralis_Contig1204 15640..15690 +
1680789516.5529401-UTR-P-littoralis_Contig1204:16445..165681680789516.5529401-UTR-P-littoralis_Contig1204:16445..16568Pylaiella littoralis U1_48UTRP-littoralis_Contig1204 16446..16568 +
1680789516.5767543-UTR-P-littoralis_Contig1204:16925..169371680789516.5767543-UTR-P-littoralis_Contig1204:16925..16937Pylaiella littoralis U1_48UTRP-littoralis_Contig1204 16926..16937 +
1680789516.5877397-UTR-P-littoralis_Contig1204:17644..178861680789516.5877397-UTR-P-littoralis_Contig1204:17644..17886Pylaiella littoralis U1_48UTRP-littoralis_Contig1204 17645..17886 +
1680789516.60382-UTR-P-littoralis_Contig1204:18391..184561680789516.60382-UTR-P-littoralis_Contig1204:18391..18456Pylaiella littoralis U1_48UTRP-littoralis_Contig1204 18392..18456 +
1680789516.614415-UTR-P-littoralis_Contig1204:19034..194261680789516.614415-UTR-P-littoralis_Contig1204:19034..19426Pylaiella littoralis U1_48UTRP-littoralis_Contig1204 19035..19426 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789516.5662773-CDS-P-littoralis_Contig1204:16568..169251680789516.5662773-CDS-P-littoralis_Contig1204:16568..16925Pylaiella littoralis U1_48CDSP-littoralis_Contig1204 16569..16925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1204.1.1

>prot_P-littoralis_Contig1204.1.1 ID=prot_P-littoralis_Contig1204.1.1|Name=mRNA_P-littoralis_Contig1204.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=119bp
MITLYPAHYACTYRSKRKQLRKDLWDSLGKKGVYRRLGRQRPHRVWWLAF
CGEGNPAPDISPPRDFDERVGMGLLVAGEDAVDEDRSAAAQEKETYASGG
IARARDEEGCCCWGGSDR*
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mRNA from alignment at P-littoralis_Contig1204:15640..19426+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1204.1.1 ID=mRNA_P-littoralis_Contig1204.1.1|Name=mRNA_P-littoralis_Contig1204.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3787bp|location=Sequence derived from alignment at P-littoralis_Contig1204:15640..19426+ (Pylaiella littoralis U1_48)
CTGGGGTCACCGGAGCGATCTGGGCCAGCTTCATCATCGCTGCCCCAGAA
GGTACGACGGTCGACTATGGTGTAGATTATGTTAAAAGATGACGACGCTG
AAAGTTTCGTGTCTTTTGGTGAGCGGTGTGTCGAAGTTCGGCAGTGATAC
GGTTTGGGTGCCGACCACCTACCTTCAACAGCAGCAGGAGGCCCCTAATA
GAGCCCACTTCGGCATTCGCACCCCACAGGTCGAAACCTCTATAGGTTAT
TCGAGTATGTCCATTGCCATGAGTTCCAGATGGGCTACGAACTGTGCCCG
ACCTCAATCGGTCCACTACAAGTCGAGAAATGTTCTAAAATGTTTTAAAA
TAACAGCTCGTGGGTCAGCTGCCATTCTGGAGGGGACAATGACCCGAGGC
ACAGCAGCCAGTGCCCCACAAGGCAGTAAGCACTTCCGGAGGATCGGGAA
AAGTTCACCCACCATCAGTCATGGTAGTTGGCCTGTGAATGACGGTGGAA
TTGATGTTGTACATGGACTACAGCACAAGAAACCTGTTTTTTATTGTATG
GGTCGTGGTTGAGGGTCAGCTCCTACCTTGCCGTGACCCCGTGACAAGGT
CTCTATCGTGCATAGTGCTGTTCTCTTTGGCTTCGATATGTACCAGGGCG
TAGGAGCACTTGAAAGATAGCTGAGACCAAGGAGAAGCACAAACAAAAAA
ACCCTACGAGTATAGAGGTTACGAATTGGGCACAGTTCAAAACGTCGATA
CCGCAAAGCCTAAAATGCCCCTAAAACGCTGTTATTGTACCATTTTTACT
ATGCAGCCAGCGGAGCGAGGCCCGTCTTGGACACCTGCACACCACTGGAC
ACAGTCTCTTTGTTGGGCGCCCAACCAACCCAGCATGGTTGGCGTACGTC
CGCAAGCATTGAGCAAGATCTAGACCTTGATGATAACGCTGTATCCAGCT
CACTACGCATGTACGTATCGGAGTAAAAGGAAACAACTCAGGAAGGACCT
GTGGGACAGCCTAGGGAAAAAGGGCGTGTATCGACGCCTTGGTAGACAGA
GACCACATAGGGTTTGGTGGCTTGCGTTTTGTGGAGAAGGGAACCCTGCC
CCAGATATTAGCCCTCCACGGGACTTCGACGAAAGGGTTGGGATGGGATT
GCTGGTTGCTGGAGAGGATGCCGTAGATGAGGATCGCAGTGCCGCTGCTC
AGGAGAAGGAGACGTACGCGTCTGGCGGTATCGCCAGAGCACGAGATGAG
GAAGGCTGCTGCTGCTGGGGAGGAAGTGACCGATAAAGTTCGCCAAAGGT
GCGGTCCTTCGAAATGGTCCATTTTTTGTGTATGATTGATAAGTCTGTCC
TGCGTTGGCAATGGTACGTTGATGTTACGCTTTCGTGTCCGTAATTTGGT
TAATTGTAGAGCTTTCCCTCTAATAGCAAGTACTTGTAGCGAGAGACAGC
GAGAGACATTGCCGTATGATAGGGTTAGTAAAATACGACACCTGCTGAAG
CGATTTAAAATCACAGATGCTCCACACCGAAGAGAGCATCACCATCAAAC
GATACGTTTACTCTTGATGCGTTTCCAACACTCCCTTTACGGCACCTACA
CATGTAATGAATCGTGCTTTATAATTGGTCCAGGGGGGTCCGTCGTATCT
TACGGCACCCACGGAACACACGCGTCACGCTGCCACACACACCACGCTGT
AGAACTGTATTCTGCTGTACAGCTGTATTCAACTGTACTGCTGCTGCTTT
TGCTGCTGCTGCTGCTGCTTATTCTGCTGCTGCTGCTGCTGCTTGCGCTG
CTTATTCTGCTGTACTGCTGCTGCTGGGATGTGTAATGATGTATCATCTC
GAAGTATCATACTCTCACTCGAGACGGAAAGCATAGCAGTGGCACCGTTA
CAACAACACAAGAACAGAAGTACAGCAAGACAAGAGCGTTGTGTGTGCGG
CAGGCTGCGGCGTGATGTGTAAATGCTGTGATGCGATATTTTAACACGAA
AACAGGTCATATTATCATCACCTACAGGCGTCAACAACAGTAGTACAGCC
GACCGTGGGAACGGACTGTAGACATGCTCGTAATGCTGGTGTGGTGTCGC
TGGCGTAGGGGTGGAAGGCTCGGGGGAAGCAGCAGCCAGGGCTGATAATG
TCGTGAGGGAAGCAGCGGCAGGTGGGCGGACTGCTGCTGCCGTTGAGCGT
GCTGCCAAAGGCAAACAACCTGCAAGGGGTGGGAAGCTTCCAAAGGAGTG
AGTCCGTGTGACCTTTTTGTTTTGACTCTTTGTGCGCGGGCCGTCACACA
TTGTAACCCTAGCTAGATGTGACTGTACACCCTTTTTTTTTCTTGGATAG
AGAACAGATAAAACTACACATTTGTGGCGTTGTTTTTTCGTTGTTGTGGA
TAGACACAATGACATTGTTGTGTTATTTTGTTCTTGTGGATAGATACAAT
AGCACCGTTCTTTTTTTGTTTATTGTAGTGGATAGATAAAATCACATCGT
TCTTGTACTGTTTTTTGTTTAGAAGATGGGCAAAATAGTACCGTTCAGTT
TTTTTATCATTTGCGATACAGTAGATAAAATCACCCCGTTCATATAATGT
TTGTTTTGTTGGAGTGGATAGACAAAATCACATCGTGCTTGTATATATTT
ACTTTTTTTGTGGCGGATGGAACAAATCGCATGTTTTTTTTTGTTATTGT
GTGATCACACTGTACTTTTTTATTTTTTGTCGTTCGTCTATTGATCTTAT
AGTTACTGGACCATCGCCCTGGTTTGCCTTTGCCTTGGTCTGTCATGGCC
CTGGGCCCTGGTTCGATGTACGAAGTACTTCGAAGTATATGGTTATGGTT
GAGGTTTGTCTTGGTTATTTTTTGTTTGTCGGACTGTTTCCAATTTTTGT
TTTTCTTTCGAGCCTGTTATTTTTTTCTGTATTTTGTTTGGTACTCTGGC
CACCACAGATGGTACCCCAACGGTACCATATCTGATTTGACTGTAGGTGA
TCATAGTCCATATATTTTTATTTTATTTTATTTTTCCTCCTAGCACGATA
TGTGCCTGGTTTGTGACCACGGGCTAGACTGGGGCGGTCGTGAGCTAATG
TGAGAATCAACAACACTGTGCTTGTACACATTTTGTTTTTGGTATTGTGT
TTTCACACTGTGCTTGTATTTTTTTTAGGGTCAGGAAAAAACAAATCACA
CATTTTTTTTCATTTTGTAGCGCGTAGATAAAATCCCGTCGTTATAACAC
CGACGTTCTTGTACTGTTTTTTGAAGTGCAAACATCACATGTCCATGAAA
CCATACCCATCGTGTATTGTACATCGTTTCTTTACTTCATAGACATAATC
ACCCTGCTGTTCTTGTACTTTTTTTTTCAACGTCGGCTGCGACAGATGGT
AGGCGGAGAAGGAGTAAGAGAGCGGAGTCAGCAGCGGCGCCAATCGTTAA
GGTTAACAGCGGTACACCAAACGCCACTGGCAAGCCAGAAACACCGCCGT
CATCGCTTGCTGCCACGCCAAAAACGTCGACTGCGCCCAATGGTAGGAAG
AGGAAAAGGAAGGGAGCGGACCCAGCAGCGGCACCAATCATTGAGGCAGA
CAGCGGCACAGCGACGGCCACTGACCTCGAAAATACGTCTGCAGGGTTTG
CCCCTTCCGCGGCACCAGCGGCTGCGTCCGAGAGCGGGAGGTCCAGGAGC
GGCAGGGTGATAGTAAAATCGCGGAGAGCCACAGAGTCCAAGGGAGTTGC
ATCCATCAAAGACAGCGACGGATGAGCAGTTGGTTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1204:15640..19426+

>mRNA_P-littoralis_Contig1204.1.1 ID=mRNA_P-littoralis_Contig1204.1.1|Name=mRNA_P-littoralis_Contig1204.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=357bp|location=Sequence derived from alignment at P-littoralis_Contig1204:15640..19426+ (Pylaiella littoralis U1_48)
ATGATAACGCTGTATCCAGCTCACTACGCATGTACGTATCGGAGTAAAAG
GAAACAACTCAGGAAGGACCTGTGGGACAGCCTAGGGAAAAAGGGCGTGT
ATCGACGCCTTGGTAGACAGAGACCACATAGGGTTTGGTGGCTTGCGTTT
TGTGGAGAAGGGAACCCTGCCCCAGATATTAGCCCTCCACGGGACTTCGA
CGAAAGGGTTGGGATGGGATTGCTGGTTGCTGGAGAGGATGCCGTAGATG
AGGATCGCAGTGCCGCTGCTCAGGAGAAGGAGACGTACGCGTCTGGCGGT
ATCGCCAGAGCACGAGATGAGGAAGGCTGCTGCTGCTGGGGAGGAAGTGA
CCGATAA
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