mRNA_P-littoralis_Contig878.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig878.18.1
Unique NamemRNA_P-littoralis_Contig878.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig878.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig878contigP-littoralis_Contig878:69698..70401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size704
Hectar predicted targeting categoryother localisation
Exons1
Cds size417
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791758.6478686-UTR-P-littoralis_Contig878:69697..699611680791758.6478686-UTR-P-littoralis_Contig878:69697..69961Pylaiella littoralis U1_48UTRP-littoralis_Contig878 69698..69961 +
1680791758.6725283-UTR-P-littoralis_Contig878:70378..704011680791758.6725283-UTR-P-littoralis_Contig878:70378..70401Pylaiella littoralis U1_48UTRP-littoralis_Contig878 70379..70401 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791758.660809-CDS-P-littoralis_Contig878:69961..703781680791758.660809-CDS-P-littoralis_Contig878:69961..70378Pylaiella littoralis U1_48CDSP-littoralis_Contig878 69962..70378 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig878.18.1prot_P-littoralis_Contig878.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig878 69962..70378 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig878.18.1

>prot_P-littoralis_Contig878.18.1 ID=prot_P-littoralis_Contig878.18.1|Name=mRNA_P-littoralis_Contig878.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=139bp
MSCFEVSSAAWHALTEHRYLPVAAVMLVQHLRLVPEVSSVSFVVTAVVDR
TPLLSHVVFATQSCYAAMPCLIRLPQSMMSSEGRPVFLVVKRRPRMTQPS
LTWRRNAPHSTLHITPRTLKSLSQRALYVRHETAFPCH*
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mRNA from alignment at P-littoralis_Contig878:69698..70401+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig878.18.1 ID=mRNA_P-littoralis_Contig878.18.1|Name=mRNA_P-littoralis_Contig878.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=704bp|location=Sequence derived from alignment at P-littoralis_Contig878:69698..70401+ (Pylaiella littoralis U1_48)
GATAACGCTGATGCGCTTCGCTGCCAACGACCAACAACAGGCACGAAACC
ATCTTATACAGTACGAGCAACAGGAATGAGCGATAATTCTTTGCCTTCCG
CAAAACTGAAATCATTTCACCACAGGAACGAGACGGAAGCAAAACCTGCG
CCACCCTGGCATCACTGACTGCTCAGTCAACGACAAAATTGGCACAACTG
CGGGCAGCTTAGTTGGGAGGAGTGTTAAGGAATCGTCTATTTTGTTGTCA
AGTCTACCATTTCCATGTCCTGTTTTGAAGTTTCCTCCGCCGCCTGGCAC
GCTCTTACAGAGCACCGGTACTTGCCCGTTGCAGCCGTGATGCTAGTGCA
ACACTTACGCCTTGTTCCTGAAGTCAGCAGCGTCAGTTTTGTTGTCACGG
CGGTGGTGGATAGAACGCCCTTGCTTTCACATGTTGTGTTTGCCACGCAA
AGCTGTTATGCCGCCATGCCGTGTCTAATACGTTTGCCGCAATCTATGAT
GAGTTCAGAAGGCCGGCCCGTCTTCCTCGTAGTCAAACGGAGACCTCGGA
TGACTCAACCCAGCTTGACATGGCGCAGGAACGCACCACACTCCACGCTC
CATATCACCCCTCGCACGCTGAAGAGCCTGTCCCAGCGGGCGTTATATGT
ACGACATGAAACGGCTTTTCCGTGTCACTGATGCGATTGGTGCTTCCGCT
GTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig878:69698..70401+

>mRNA_P-littoralis_Contig878.18.1 ID=mRNA_P-littoralis_Contig878.18.1|Name=mRNA_P-littoralis_Contig878.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=417bp|location=Sequence derived from alignment at P-littoralis_Contig878:69698..70401+ (Pylaiella littoralis U1_48)
ATGTCCTGTTTTGAAGTTTCCTCCGCCGCCTGGCACGCTCTTACAGAGCA
CCGGTACTTGCCCGTTGCAGCCGTGATGCTAGTGCAACACTTACGCCTTG
TTCCTGAAGTCAGCAGCGTCAGTTTTGTTGTCACGGCGGTGGTGGATAGA
ACGCCCTTGCTTTCACATGTTGTGTTTGCCACGCAAAGCTGTTATGCCGC
CATGCCGTGTCTAATACGTTTGCCGCAATCTATGATGAGTTCAGAAGGCC
GGCCCGTCTTCCTCGTAGTCAAACGGAGACCTCGGATGACTCAACCCAGC
TTGACATGGCGCAGGAACGCACCACACTCCACGCTCCATATCACCCCTCG
CACGCTGAAGAGCCTGTCCCAGCGGGCGTTATATGTACGACATGAAACGG
CTTTTCCGTGTCACTGA
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