mRNA_P-littoralis_Contig878.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig878.6.1
Unique NamemRNA_P-littoralis_Contig878.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig878.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig878contigP-littoralis_Contig878:25837..26684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size261
Hectar predicted targeting categoryother localisation
Exons2
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791758.5990295-CDS-P-littoralis_Contig878:25838..258571680791758.5990295-CDS-P-littoralis_Contig878:25838..25857Pylaiella littoralis U1_48CDSP-littoralis_Contig878 25839..25857 -
1680791758.6125426-CDS-P-littoralis_Contig878:26445..266841680791758.6125426-CDS-P-littoralis_Contig878:26445..26684Pylaiella littoralis U1_48CDSP-littoralis_Contig878 26446..26684 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig878.6.1prot_P-littoralis_Contig878.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig878 25839..26684 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig878.6.1

>prot_P-littoralis_Contig878.6.1 ID=prot_P-littoralis_Contig878.6.1|Name=mRNA_P-littoralis_Contig878.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
LSPQTQEYADTCTSTREAEHGGLGSIEDAFGDRDGQTDLHSTASTKMEQQ
NPTACNTEGESVDTCEELQWSQDTSGPDARNSAGET
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mRNA from alignment at P-littoralis_Contig878:25837..26684-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig878.6.1 ID=mRNA_P-littoralis_Contig878.6.1|Name=mRNA_P-littoralis_Contig878.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=848bp|location=Sequence derived from alignment at P-littoralis_Contig878:25837..26684- (Pylaiella littoralis U1_48)
CTATCACCGCAGACCCAAGAATATGCTGATACATGTACTTCAACTAGAGA
GGCGGAGCATGGGGGGTTAGGAAGCATAGAGGATGCTTTCGGTGATCGGG
ATGGACAAACGGATCTGCACAGCACTGCTAGCACCAAGATGGAGCAGCAA
AACCCGACAGCATGTAATACGGAAGGCGAGTCGGTTGACACTTGTGAGGA
ATTGCAATGGTCTCAAGACACTTCCGGCCCAGACGCTAGGTGAGAACGAC
GTCGGCATAGAAAACGCTCTACAGTAGCACTGATTTCGTGGCCTTTCTTT
GTGGACGGCGACGAGCCCGTACAATTGCACAACCAGAGGAATGAGTTGGT
ATCTCCGTCATTCGCGAGCCATGCAAGTGGCTGCAATAGCTGCCATCATA
CCGTGTACTGTAGTGTGTGTTGGCATCCCTTTCATTGGACGCTACTCTAC
ACCTTTCGGGTAGCAGGTAGACGCTCCAACCGGGGTCACACAGGAGGAAG
TCAACACAGGAGTTTTTTTTTTTGCTCCACTTCCCTCTGCGGTGCTTGCC
TTTTGGTTGAGCTTTTATCGCGAGGAAGGGGACAGCAATCCCTTTCCCTC
GTCGATGGTACGATTGAATTTTGTTTACTCACGAATTAATCGCTTTCCAC
TTTCACGCGCAATGTGAGAAAAAATCTAGATCGTGTTAGTATCGGTTTTA
TTCTTGGGCTCAATCTAATGTGTGGGGGGGGATACCCTCCCAAACCTTGC
ACACTATATTGACGTTCTTCTCAACAACTAGCGCACACTGATGTGTGTAC
CGCGCTGGACGTTTTTGCTTTTGGCAGAAATTCAGCTGGAGAAACCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig878:25837..26684-

>mRNA_P-littoralis_Contig878.6.1 ID=mRNA_P-littoralis_Contig878.6.1|Name=mRNA_P-littoralis_Contig878.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig878:25837..26684- (Pylaiella littoralis U1_48)
CTATCACCGCAGACCCAAGAATATGCTGATACATGTACTTCAACTAGAGA
GGCGGAGCATGGGGGGTTAGGAAGCATAGAGGATGCTTTCGGTGATCGGG
ATGGACAAACGGATCTGCACAGCACTGCTAGCACCAAGATGGAGCAGCAA
AACCCGACAGCATGTAATACGGAAGGCGAGTCGGTTGACACTTGTGAGGA
ATTGCAATGGTCTCAAGACACTTCCGGCCCAGACGCTAGAAATTCAGCTG
GAGAAACC
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