mRNA_P-littoralis_Contig877.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig877.20.1
Unique NamemRNA_P-littoralis_Contig877.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig877.20.1 vs. uniprot
Match: A0A6H5KWH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWH1_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.010e-11
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 RVLAVATGSTVGTAPTLPAFSGHLCSPAIGENDVRRAALEVLDLAYAK 144
            RVLAVATGST G AP LPAFS HLC P +G+ND+R AAL+ L L YA+
Sbjct:  151 RVLAVATGSTTGKAPELPAFSRHLCKPEVGQNDLRSAALDDLVLIYAR 198
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BLAST of mRNA_P-littoralis_Contig877.20.1 vs. uniprot
Match: A0A6H5KAC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC5_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.050e-10
Identity = 33/48 (68.75%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 RVLAVATGSTVGTAPTLPAFSGHLCSPAIGENDVRRAALEVLDLAYAK 144
            RVLAVATGST G AP LPAFS HLC P  G+NDVR  AL+ L L YA+
Sbjct:  194 RVLAVATGSTTGKAPELPAFSQHLCEPVAGQNDVRPDALDDLVLTYAQ 241
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig877.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWH1_9PHAE2.010e-1168.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAC5_9PHAE1.050e-1068.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig877contigP-littoralis_Contig877:28628..29477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size185
Hectar predicted targeting categoryother localisation
Exons2
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791758.4893222-CDS-P-littoralis_Contig877:28627..287711680791758.4893222-CDS-P-littoralis_Contig877:28627..28771Pylaiella littoralis U1_48CDSP-littoralis_Contig877 28628..28771 +
1680791758.5047183-CDS-P-littoralis_Contig877:29437..294761680791758.5047183-CDS-P-littoralis_Contig877:29437..29476Pylaiella littoralis U1_48CDSP-littoralis_Contig877 29438..29476 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig877.20.1prot_P-littoralis_Contig877.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig877 28628..29476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig877.20.1

>prot_P-littoralis_Contig877.20.1 ID=prot_P-littoralis_Contig877.20.1|Name=mRNA_P-littoralis_Contig877.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=61bp
RVLAVATGSTVGTAPTLPAFSGHLCSPAIGENDVRRAALEVLDLAYAKKK
EESIAAGLLPV
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mRNA from alignment at P-littoralis_Contig877:28628..29477+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig877.20.1 ID=mRNA_P-littoralis_Contig877.20.1|Name=mRNA_P-littoralis_Contig877.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=850bp|location=Sequence derived from alignment at P-littoralis_Contig877:28628..29477+ (Pylaiella littoralis U1_48)
CGGGTGCTCGCGGTGGCGACCGGGTCCACTGTGGGCACTGCTCCCACACT
TCCTGCCTTCTCTGGACACCTTTGTTCACCCGCCATCGGGGAAAATGATG
TCCGACGTGCGGCTCTGGAAGTTCTGGATTTGGCCTACGCCAAGGTGGGT
GGGGCGTTGCTTCTCTCGTTTTGTAATTTTCATTCGAGATTTGTTATGTT
TTCTGGTGTCATTGCTTGTTGCGGGTGTTGTTGTGTTTTGTTTCCTTCAT
TATGTCTCCGTCGTCAGTGAATCTTATCTCTTCTGCCTTTCTGTTTGTGT
TCTCCGTACTTGAGGGTCTTGTCCCCGTGGTAGCCAGTTCACCTTCTTTC
GTCCGAACCCTGTCCTCGGTTTTATTATGCAGACCAAAATGTGACATCTG
CTTTATTGACGTGGGAGCATACTTCCCAAAGAGTTCGCAAGAGGTTTCAC
ACACGGGGGGGGAGGGTGGGTCCAAGTCGAGCATTCTTCCGAAGTAGCAT
CGGTAAAATCTTCCCGCGAGGTTTAGGTCCGACTTGTTTTAGTCTCCTAC
CATTTGATGCAACTCGATGACAAGCGTTTCAAAATACATTTTGACCCTCC
CCCCGGGATAGAACAACAGATGACTTCGTTTGTTAACTTGTTTTTGGGAA
ACCGCACCCCCTCAATACCCCCCCTCTCGGTACAGCGCCCCCGGTGTGCC
GTTCTACTTTCTCTTGCCGTCTTGCGACAACACACTTCTTCTGGTCCATT
GGCTCTTTGGCGCTCCTAATCTTCTACATCCCTGACCCGTTGCCCCTCGC
TCGCTCACAGAAAAAGGAGGAATCCATTGCTGCAGGCCTTCTACCGGTCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig877:28628..29477+

>mRNA_P-littoralis_Contig877.20.1 ID=mRNA_P-littoralis_Contig877.20.1|Name=mRNA_P-littoralis_Contig877.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=183bp|location=Sequence derived from alignment at P-littoralis_Contig877:28628..29477+ (Pylaiella littoralis U1_48)
CGGGTGCTCGCGGTGGCGACCGGGTCCACTGTGGGCACTGCTCCCACACT
TCCTGCCTTCTCTGGACACCTTTGTTCACCCGCCATCGGGGAAAATGATG
TCCGACGTGCGGCTCTGGAAGTTCTGGATTTGGCCTACGCCAAGAAAAAG
GAGGAATCCATTGCTGCAGGCCTTCTACCGGTC
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