mRNA_P-littoralis_Contig877.38.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig877.38.1
Unique NamemRNA_P-littoralis_Contig877.38.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig877.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig877contigP-littoralis_Contig877:86734..88449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size583
Hectar predicted targeting categoryother localisation
Exons2
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791758.2973995-UTR-P-littoralis_Contig877:86733..869491680791758.2973995-UTR-P-littoralis_Contig877:86733..86949Pylaiella littoralis U1_48UTRP-littoralis_Contig877 86734..86949 -
1680791758.3236597-UTR-P-littoralis_Contig877:87252..872561680791758.3236597-UTR-P-littoralis_Contig877:87252..87256Pylaiella littoralis U1_48UTRP-littoralis_Contig877 87253..87256 -
1680791758.3380017-UTR-P-littoralis_Contig877:88389..884491680791758.3380017-UTR-P-littoralis_Contig877:88389..88449Pylaiella littoralis U1_48UTRP-littoralis_Contig877 88390..88449 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791758.3097615-CDS-P-littoralis_Contig877:86949..872521680791758.3097615-CDS-P-littoralis_Contig877:86949..87252Pylaiella littoralis U1_48CDSP-littoralis_Contig877 86950..87252 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig877.38.1prot_P-littoralis_Contig877.38.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig877 86950..87252 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig877.38.1

>prot_P-littoralis_Contig877.38.1 ID=prot_P-littoralis_Contig877.38.1|Name=mRNA_P-littoralis_Contig877.38.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
MQGGKLKAQACPAKTTVRESGGVQPQYCREKRRCFVVDKGLQSTGQTAPR
LPEPGEHHRSTCRHRLFSVVITNGWFCCRRGHVFLRWMSATPSRGQNIKR
*
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mRNA from alignment at P-littoralis_Contig877:86734..88449-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig877.38.1 ID=mRNA_P-littoralis_Contig877.38.1|Name=mRNA_P-littoralis_Contig877.38.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1716bp|location=Sequence derived from alignment at P-littoralis_Contig877:86734..88449- (Pylaiella littoralis U1_48)
TTTGGGAGGCGGAGAGACACTGTTGACGACCCACCGCGGTACGAGCGCTA
TCGACATCAGGCGAGCAGTTGCGGAATAGTGCGCTCCTGAAGCAGCTGCT
GGTTCTCGCCGGGTTTGAAGCCCTAAAAGATCACGGTAGCAGGAGTGCAT
CATGATCATGTGGCCAAACTTCGAGAAAAAATCCACCTGTTTCGGACAGG
TTATAATCGGTGCGCACGCCCTAACTCGGGAACGAAGGCGTGCTCTGATT
GCGTTCCGCCGGAGCGTGTTGATAAGTCGTCCGTTCAACCATCACAATTT
ACATTTTACTGCTGGCAAATAGAAGCAATAAATTACAGGAGGAACACTCG
ACATATGAGCTCTGCGTGTTGGCTCAAAATGAGGTCTCTTTTGGCTCAAA
TTGCGGTGTAGCTTGAATAAATCCGCACACACCTGTACTGCTGTACAAAT
ACTCCGCGCACCTGCTGTACTATTGTACTGCTGTACTGCTGTACAGAGTA
AAGCAGTCAAGCTAGACCGCATTTTGAGGTAAAATTCGGAGCTCATATAT
CAAGCATTCCTTCTGTACTGCTTCTATTTGCCAGCCGTAAATTGTGATAG
TAGGACGGACAACTTGCCAACACGCTCCGGCGAAGCGCAATCAGAGCGCA
CCTTCGTTCCCGGTTTAGGGCGTGCGCGCCGATTACAACCTGTCCGAAAC
AGGTGGATTTTTTCTCAAAATCTGGTCACATGATCATGATGCACTCCTGC
TACCGTGTCAACCAGGGCTTCAAACCCGGCGAGAACCAGCAGCTGCTTCA
GGAGCACAATAGTCCCCACTTGCTCGCCTGATGTCGATAGAGCTCGTACC
GCGGTTGGTCGTCATCAGTGTGTCTGCGCCTCCCAAATGATCCCGAGCCC
CCCCTCCCCTAAGAAAGCCTGCCGCCGAATTACGAGGAGATTGAATTGGG
CGAATCTGCTTATTTACCTAAAATTTGTTTCATATGCGGTACCTATCATT
TTTTCCATATCCTTTGGTGAAAAAGTTCAAAGTTGGGGCGGTAAGACGCG
ACAAAGTGGCACGTTCCGTTGTCATCGCTGAGCTTTCCGTCGCGCGGTGT
GTGATACAACGACCTCAACCTTTTTCGGAACAATCATCGACTAAACCCTG
TTGAGCTAAGCATGCATGCATACGTTACCGCTCAATTTTGCAGGGCAATG
CAGGGAGGGAAGCTGAAAGCGCAAGCGTGCCCGGCGAAGACAACCGTTCG
TGAATCTGGAGGGGTTCAACCGCAGTACTGCCGCGAGAAACGTCGATGCT
TCGTCGTCGACAAGGGGCTACAGAGCACTGGACAAACGGCTCCAAGGCTT
CCAGAACCTGGAGAACATCACAGATCGACTTGTCGACATCGACTTTTTTC
TGTGGTCATTACTAACGGTTGGTTCTGCTGTAGACGAGGTCACGTTTTTC
TCCGGTGGATGTCGGCGACGCCATCAAGGGGCCAAAATATCAAAAGATGA
ATTTCGTGGCTCACGAAAATGCCCTGTTTGTCACGACGTTGAGTGGTGGA
CGAAATATTATAGCGCACACGGGCGAAATTTCGTAGAGCTTTGCCAGTGT
CGCTCCTAACCAACTGTTCAGCGGCTTTGGCCTGAACCTTTTTCTATGGT
TTCGAAGAGTTGCAGAGCGCCAGACGAATACGCCGAGGTAGAAACCCGTT
CTTCGCCCAAAGAGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig877:86734..88449-

>mRNA_P-littoralis_Contig877.38.1 ID=mRNA_P-littoralis_Contig877.38.1|Name=mRNA_P-littoralis_Contig877.38.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig877:86734..88449- (Pylaiella littoralis U1_48)
ATGCAGGGAGGGAAGCTGAAAGCGCAAGCGTGCCCGGCGAAGACAACCGT
TCGTGAATCTGGAGGGGTTCAACCGCAGTACTGCCGCGAGAAACGTCGAT
GCTTCGTCGTCGACAAGGGGCTACAGAGCACTGGACAAACGGCTCCAAGG
CTTCCAGAACCTGGAGAACATCACAGATCGACTTGTCGACATCGACTTTT
TTCTGTGGTCATTACTAACGGTTGGTTCTGCTGTAGACGAGGTCACGTTT
TTCTCCGGTGGATGTCGGCGACGCCATCAAGGGGCCAAAATATCAAAAGA
TGA
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