mRNA_P-littoralis_Contig877.29.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig877.29.1
Unique NamemRNA_P-littoralis_Contig877.29.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig877.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig877contigP-littoralis_Contig877:51540..54313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size447
Hectar predicted targeting categoryother localisation
Exons2
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791758.2274456-CDS-P-littoralis_Contig877:51539..518871680791758.2274456-CDS-P-littoralis_Contig877:51539..51887Pylaiella littoralis U1_48CDSP-littoralis_Contig877 51540..51887 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791758.2413013-UTR-P-littoralis_Contig877:51887..519031680791758.2413013-UTR-P-littoralis_Contig877:51887..51903Pylaiella littoralis U1_48UTRP-littoralis_Contig877 51888..51903 +
1680791758.2619276-UTR-P-littoralis_Contig877:54231..543131680791758.2619276-UTR-P-littoralis_Contig877:54231..54313Pylaiella littoralis U1_48UTRP-littoralis_Contig877 54232..54313 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig877.29.1prot_P-littoralis_Contig877.29.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig877 51540..51887 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig877.29.1

>prot_P-littoralis_Contig877.29.1 ID=prot_P-littoralis_Contig877.29.1|Name=mRNA_P-littoralis_Contig877.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=116bp
LILNVETKALRPDSKSGPLGKTSLRRRGEGGRLRRGGAWERVESCPAQAA
RRCNKQRQEERRRITEEVGLSRDPGNGEGLGSSEGQVMGDACLPPRLGSF
RPHRDYDHDPLLSQG*
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mRNA from alignment at P-littoralis_Contig877:51540..54313+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig877.29.1 ID=mRNA_P-littoralis_Contig877.29.1|Name=mRNA_P-littoralis_Contig877.29.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2774bp|location=Sequence derived from alignment at P-littoralis_Contig877:51540..54313+ (Pylaiella littoralis U1_48)
TTGATTCTAAATGTAGAAACCAAAGCACTACGCCCTGATAGTAAGAGTGG
GCCGCTTGGTAAGACAAGTCTTCGTCGACGAGGGGAGGGAGGGAGGCTTC
GCCGAGGAGGTGCTTGGGAAAGGGTGGAGAGCTGTCCTGCACAAGCAGCG
AGGAGATGCAACAAACAACGACAAGAAGAACGCCGTCGCATTACAGAAGA
AGTTGGCCTCTCACGTGACCCAGGAAATGGAGAGGGGCTTGGAAGCAGTG
AAGGGCAGGTCATGGGAGACGCTTGTTTACCGCCACGCCTTGGAAGTTTC
CGTCCACATCGTGACTACGATCATGACCCGCTTTTATCACAAGGATGACC
CAGAAGCGTTCGAGGTGAGAGGTCTACTCAAGTATTGCGCGTTGTGTTTC
CATTGCAATGTGGATGTATACACCGAATCATTTCTGAATATCCAAAATTC
AACTGAAGGAGCTTGCCCTCGGTTTGTATCACTCCAAACTATCTGATACA
TCGAAGATGAATGCCGCGTAGGCAAACGTTTAAATTACAATTGGTCTTGA
GAAATGCCAGGTTTCACCAGGCTCCTTGCGTGCGGAACCCAAGCACAACA
AAATCCTACGCACTAACACATTTTTGCTAATCTAGGATACATCTTTGAAT
GAATTCAAGATCAGCCAATTTGCTGCCAAATTATTTTCAGCGAAATTTCG
ATGATTATTTGGGTTCAATGCGCTGTCTACTGGCCTCAAACGGCGTTTTT
GTTTGGCAGTCAACCTACGAGACGCGTCACTCCATTCTTCCGTTCTTTTC
GTCCATTTCAACGACAGCAATGCATAACGATGGTTGTAACGCACCGCCGT
GTATCACCAAACAAACGATACTATTTCTTCCTCCTTTTGGGAACCCTCCA
CCGCATGTGTCCCTCTTCTCCGCCGAAAGCTTGCAAACCTAGGGGCAGGA
AGCAAACCATTACCGGAATGCTTAGTGCAGCTGTTTGGCCTTCTCAAGGC
AACGCAGCAAACCGACTTCATCTCGAAGACAGTCGCAGcCTCCTATTTAC
CGGGTCTCGTAAATAAGACCAAAACTAAGGCACTCACTGAGGCGAACACT
TGACATCCTGAGGATGATCTCCCTTACTTTGGCTCTAGGACAGTGCTCAG
GCAAGGCCATCTGCAGCAAGGAGGACGTGCCTTTGCCCGCTGAAGGCATT
GTTGGCCTCCTGCAAACTTTCGTGACGCCAGCGCAAATAGTCCAGTTTAG
CAACGACAACGGCAAGCTGCAGGATGTTCTCCTCAGTGTTTTGGGAGAGT
CGTGGAACATCTTCAAAAAAAAGGCCAAGGTGTGCGACAAGAGGGGTTCG
CAGTCGACTGTGTACGCGGCAATCAACAAGCAGGGCTTGGCCGTTGCGTT
CGGAAGCAAAGAACAAAAGCAACGTGTCACCGGGGCTTGGCAGGATGCCC
ATTCTTTCGACGTGTTGTCTACGTCTAGCCTTCGACCACAAGGTCATGGG
TCAGTTTCTTCTTCACTCTGCGGACAAAGAGGTCAAAGACGCTCGGTTTT
TAGCTGTCGAGTTCAGCATGCTGTGCGTGGATCACGTTGCGCCTGGTCCG
ATCTCCAGCTTCGAACGCCTCTGGGAGGAACTTGACCCCAATGCATTCCT
GAAGAAGAACATCATTGCTCAGCCTACAATTCTGGACGCGAAGGGGAAAG
CATTCTTCGACAAAGAACGAGCCGCTGTCATCGCAGCAGCGGGTAACGGA
ACCAAGAACGGGGCTAGCCCGGGTAGGGAGGGAAGTAAGCAAGAGGACCA
CCTCGACAAGAAGGGTGAGGAGGATGACGGAAGTGATCTAGATGGTACCT
CGGAAGGCGGACATCAAGGTACTGGTGAAGATCGCAACATCGGGCGCAAC
GGTGAGCAAAATAATTACTTCATGGTGAAACCTTTATTTAAAAATCTTCA
TTTTATTTCTCGCTTTCACTCCATTAGTTTTCTCATGCCTCCACAACTCA
AAGGTAGAAAAAAAATTTCCGGATAAGCGGACTGTCTTTCCTCAAGTAAG
AAACACCCATTATATATGATATGTATTGGACGTATAGCGTTGGTTGCCGA
TCTCTTCAATGTAGCCTGTAACCGATTCCCTTGACTTCGTGTAATTCCTT
CTTGCCGTATACGTTacgaggTACATCGCAAGTTTTTTTTCTATCCAGGA
CATCCAATTTCAAAATGGAGAAAcTCACACAGAGGGTctattaCTCGATT
TTTCGTTcagaaacgCCGGCCCGATTGAGTCTCTGTATTGTTTAACATAC
AAAGTACACAGTGGTACCACAGCAGTGATGCTGGATGTTTTGCAATGACC
GCAACATCCAAGATCAAAATTCAATACACTCTCATTTACCTCCGCCGCGA
AATGAAACTGCGACGTGATGTAGAGCCGCGTCCAAAAACAAGCTCGGACA
TTGAATGTATGGATCTCCTCAGGTAAATGATTCAATTTGGTGTTGTTGTA
TCATACGTTAACATAACGGTATCAGCGTAAGCTCCTCACATGACGAACTA
CCTGGTATGCTTTTTCACCATCTCTCTCTCGTTCGTGGTGTGTGCGTTCG
TATTGTCGATCTGCTTTTTTCCTACATACGTGGATGTTGACCCTATTTTA
TTTCGCTATGTCTTTGTTTTCCTGCCAACACCCGCGTTGAAGACGCCAAC
AAGCGAACGTCTCGAATACAGATTAACCTGGCCGATGGCGAGACCTTCCT
CACGAAGCTCCCAATGGACATGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig877:51540..54313+

>mRNA_P-littoralis_Contig877.29.1 ID=mRNA_P-littoralis_Contig877.29.1|Name=mRNA_P-littoralis_Contig877.29.1|organism=Pylaiella littoralis U1_48|type=CDS|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig877:51540..54313+ (Pylaiella littoralis U1_48)
TTGATTCTAAATGTAGAAACCAAAGCACTACGCCCTGATAGTAAGAGTGG
GCCGCTTGGTAAGACAAGTCTTCGTCGACGAGGGGAGGGAGGGAGGCTTC
GCCGAGGAGGTGCTTGGGAAAGGGTGGAGAGCTGTCCTGCACAAGCAGCG
AGGAGATGCAACAAACAACGACAAGAAGAACGCCGTCGCATTACAGAAGA
AGTTGGCCTCTCACGTGACCCAGGAAATGGAGAGGGGCTTGGAAGCAGTG
AAGGGCAGGTCATGGGAGACGCTTGTTTACCGCCACGCCTTGGAAGTTTC
CGTCCACATCGTGACTACGATCATGACCCGCTTTTATCACAAGGATGA
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