mRNA_P-littoralis_Contig877.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig877.11.1
Unique NamemRNA_P-littoralis_Contig877.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig877.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig877contigP-littoralis_Contig877:17994..18806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size813
Hectar predicted targeting categoryother localisation
Exons1
Cds size480
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791758.110961-CDS-P-littoralis_Contig877:17993..184731680791758.110961-CDS-P-littoralis_Contig877:17993..18473Pylaiella littoralis U1_48CDSP-littoralis_Contig877 17994..18473 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791758.133114-UTR-P-littoralis_Contig877:18473..188061680791758.133114-UTR-P-littoralis_Contig877:18473..18806Pylaiella littoralis U1_48UTRP-littoralis_Contig877 18474..18806 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig877.11.1prot_P-littoralis_Contig877.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig877 17994..18473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig877.11.1

>prot_P-littoralis_Contig877.11.1 ID=prot_P-littoralis_Contig877.11.1|Name=mRNA_P-littoralis_Contig877.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=160bp
GGVACPRAYSSRAVSSLIPGTRLQFGWAHSPPHEVGRVCVWVRSRRFPFP
LRGDLSAGSTTREYTPVSLYSLVWRLPVRAGVGFTPYRRGCRLPLPCGRS
LPVSVGVDFTSYRGGCRLPFFAVWQGQGLPCFGIVRGVLMMHWYMHFTHL
VPLSFGAPW*
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mRNA from alignment at P-littoralis_Contig877:17994..18806+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig877.11.1 ID=mRNA_P-littoralis_Contig877.11.1|Name=mRNA_P-littoralis_Contig877.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=813bp|location=Sequence derived from alignment at P-littoralis_Contig877:17994..18806+ (Pylaiella littoralis U1_48)
GGGGGAGTCGCGTGCCCACGTGCCTACAGCTCTAGAGCGGTGTCATCGTT
GATCCCAGGTACGCGGTTGCAATTTGGGTGGGCACATTCTCCACCTCATG
AGGTTGGGCGGGTTTGTGTTTGGGTTCGGTCACGTCGTTTTCCGTTTCCC
CTTCGTGGCGATTTGTCCGCCGGTTCAACCACTCGTGAATATACGCCGGT
GTCGCTGTACTCGCTTGTGTGGAGGTTACCTGTGAGGGCCGGTGTTGGCT
TCACGCCCTATCGAAGAGGCTGCCGATTGCCTTTGCCGTGTGGCAGGAGT
TTGCCTGTGAGTGTCGGTGTTGACTTCACGTCCTATCGAGGAGGCTGCCG
ATTGCCTTTCTTTGCCGTGTGGCAGGGGCAGGGTCTGCCCTGCTTCGGCA
TTGTGAGGGGCGTGCTGATGATGCATTGGTACATGCATTTCACTCATCTT
GTGCCCCTCTCGTTTGGCGCCCCATGGTGATGTTTAGCGTGTGCGATGTC
ACTTTCTTACAGCACGAGTACATACTGAAAACTTCTGTGTACATATGATA
TGAATACAGAGTAGCAGTATCGGTTTGCGGGTTGCGCCACAGGGTGGTGA
TGTGTCGCGCGTGCGATGTCACTTTGGTGGTACTGCTGTACAGCCGTATT
GTGAAATGTTTCTTGTGCGCTCTTGTGTGAACACATTTCGGTGGTGTGAt
tttTTTTTTTTTTTCTGGAAATCGTCGTGATGTCTCACGGGTGCGAGCAC
ATTTTTTTAAGGAAAACTCCTGAACATCACAAAGAAAGCACATCCACCCC
AGACAAGACTCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig877:17994..18806+

>mRNA_P-littoralis_Contig877.11.1 ID=mRNA_P-littoralis_Contig877.11.1|Name=mRNA_P-littoralis_Contig877.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=480bp|location=Sequence derived from alignment at P-littoralis_Contig877:17994..18806+ (Pylaiella littoralis U1_48)
GGGGGAGTCGCGTGCCCACGTGCCTACAGCTCTAGAGCGGTGTCATCGTT
GATCCCAGGTACGCGGTTGCAATTTGGGTGGGCACATTCTCCACCTCATG
AGGTTGGGCGGGTTTGTGTTTGGGTTCGGTCACGTCGTTTTCCGTTTCCC
CTTCGTGGCGATTTGTCCGCCGGTTCAACCACTCGTGAATATACGCCGGT
GTCGCTGTACTCGCTTGTGTGGAGGTTACCTGTGAGGGCCGGTGTTGGCT
TCACGCCCTATCGAAGAGGCTGCCGATTGCCTTTGCCGTGTGGCAGGAGT
TTGCCTGTGAGTGTCGGTGTTGACTTCACGTCCTATCGAGGAGGCTGCCG
ATTGCCTTTCTTTGCCGTGTGGCAGGGGCAGGGTCTGCCCTGCTTCGGCA
TTGTGAGGGGCGTGCTGATGATGCATTGGTACATGCATTTCACTCATCTT
GTGCCCCTCTCGTTTGGCGCCCCATGGTGA
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