mRNA_P-littoralis_Contig1204.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1204.5.1
Unique NamemRNA_P-littoralis_Contig1204.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1204.5.1 vs. uniprot
Match: A0A6H5J7P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P3_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 3.420e-18
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:  157 DNVSYVLARTIRSNLRREAAKLIGCTGMGNQCKRGQCFARAMQMFPGKGMD*IPNEVVLA 336
            DNVSYVLART+R  L+  AA+ IG +G GNQC+RG CFARAM MF GKGM+ IP +VVLA
Sbjct:  160 DNVSYVLARTVRRILQYLAAQEIGASGQGNQCRRGDCFARAMGMFFGKGMEGIPRDVVLA 219
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BLAST of mRNA_P-littoralis_Contig1204.5.1 vs. uniprot
Match: D8LNQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ5_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.700e-7
Identity = 27/47 (57.45%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:  136 KGEVGKYDNVSYVLARTIRSNLRREAAKLIGCTGMGNQCKRGQCFAR 276
            K    + DNV YVLART+RSNL+  AA+ IG TG GNQC+RG   +R
Sbjct:  120 KARDSEGDNVPYVLARTVRSNLQYLAAQEIGATGQGNQCRRGMFCSR 166
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1204.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J7P3_9PHAE3.420e-1868.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNQ5_ECTSI1.700e-757.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1204contigP-littoralis_Contig1204:21018..22714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size339
Hectar predicted targeting categoryother localisation
Exons2
Cds size312
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789516.4235213-UTR-P-littoralis_Contig1204:21017..210431680789516.4235213-UTR-P-littoralis_Contig1204:21017..21043Pylaiella littoralis U1_48UTRP-littoralis_Contig1204 21018..21043 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789516.434664-CDS-P-littoralis_Contig1204:21043..212371680789516.434664-CDS-P-littoralis_Contig1204:21043..21237Pylaiella littoralis U1_48CDSP-littoralis_Contig1204 21044..21237 -
1680789516.442956-CDS-P-littoralis_Contig1204:22596..227141680789516.442956-CDS-P-littoralis_Contig1204:22596..22714Pylaiella littoralis U1_48CDSP-littoralis_Contig1204 22597..22714 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1204.5.1prot_P-littoralis_Contig1204.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1204 21044..22714 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1204.5.1

>prot_P-littoralis_Contig1204.5.1 ID=prot_P-littoralis_Contig1204.5.1|Name=mRNA_P-littoralis_Contig1204.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
ANARCLSRGGTSNTPTGRQLAAINRASSCLNYYYYSRQPGRAGSPKGEVG
KYDNVSYVLARTIRSNLRREAAKLIGCTGMGNQCKRGQCFARAMQMFPGK
GMD*
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mRNA from alignment at P-littoralis_Contig1204:21018..22714-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1204.5.1 ID=mRNA_P-littoralis_Contig1204.5.1|Name=mRNA_P-littoralis_Contig1204.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1697bp|location=Sequence derived from alignment at P-littoralis_Contig1204:21018..22714- (Pylaiella littoralis U1_48)
GCGAATGCGAGGTGCCTCTCCCGAGGTGGGACAAGCAACACCCCAACCGG
ACGACAACTTGCGGCAATCAACAGGGCTTCCTCGTGTCTCAACTACTACT
ACTACAGTAGACAACCAGGTGTGTGTGTGTGTGTTGTCATCCCATATTCT
CTGGCACACTAGTCTGCACCTTGCGGTTCAAACTACACGCTAGGCCCATC
GACGGGGTCACACAGGAGGAAGGTCAACACAGGAGGAGTTACCCCCACCT
TCCTTCTGCGGTACATGCGTGAGATTTTTCTCGCGAGCAGGGATCCGCGG
TCCCTACCCTCGTCGGCGAAGCCGAATCTGCTTTTACTAACAGCATAGCC
GCTTTCAAGTAGCAAAGAAACACATTCACCGGGAATCGAACCCCCGTTCC
TCTGCATCTACTAGGTAGTGGTTAACGAGGGGACCACTAGTCCACCGGGG
CGACCGGAGCTAACCAGGTGTGTGTGTGTGTGTGTGTTGTCATCCCATAT
TCTCTGGTACACTAGTCTGCACCCTGCGGTTCAAACTACAGGCTAGGCCC
ATCGACGGGGTCACACAGGAGGAAGGTCGACACAGGAGGAGTTACCCCCA
CCTTCCTTCTGCGGTACATACGTGAGATTTTTTCTCGCGAGCGGGGATCC
GCGGTCCTTACCCTCGTCGGCCAAGCCGAATCTACGTTTACTAACAGCAT
AGCCGCTTTCAAAGTAGCAAAGGAACACATTCACCGGGAATCGAACCCCC
GTTCCTCTGCATCTAGTCTAGTGGTAAACGAGGGGACCACTAGTCCACAC
TAGTCCACCGGGGCGACCGGTGTGTCTGTGTGCGCATTATTATGTTTGTG
GAAGAGAGGCCTCTTGCGCCAGCGGTATGATGTGACATGTTCGGAATGAA
ACATTCCAACCCAAACAACGGCAGCCGTAGGCGACGGCAGTGGTACACTT
ACGATATCACAAGAGACAACACGAGCTGAAGACAACAGCAGCATCGGTAT
TTGAACTAGGCTCTCTGCCTTTCACGAGCCATCCTGTTATCATACGTACC
CGCTTTATAGATAGTTGAAGAAAAACTGCTCACTGAAAGCCACATGTGTC
ACCACACCAAATATGCCTGCTGTACAGGGGTTGCTGGACACATAAACTAC
ACGAACAGCGGACGATCTGTGGTAGTATCGAGCAGCATGCTTGATGATGT
TGTTGCCGATGCTCGTTGGTAGTCTAGTACGAAGTATTTAAACATGATGC
CATCAACGAAGTTATCGAAATTGACGCTGACATAAAATCACACAAATATA
GCAGTTAGTAGCACTCGAAAACATCGCTCGGGTGTGTTTGGGGTCTCGTA
GTTCCAAGAGGCTGTTGGAGTTTATTTTATGTCTCGATGTTTCTTCGGCT
ACTGAACATGCTCAGTATGCTCAGTGAATAAATCACACACCCCCACCCTC
GCGTCCCCGAAACGCATGACCTGACAGGGCGTGCTGGATCGCCAAAAGGA
GAGGTAGGAAAGTACGACAACGTGTCGTATGTCCTTGCTCGCACGATCCG
CAGCAATTTGCGCCGCGAGGCGGCGAAATTGATCGGGTGCACGGGCATGG
GTAACCAGTGCAAGCGTGGGCAGTGCTTTGCACGAGCGATGCAGATGTTC
CCTGGAAAAGGAATGGACTGAATACCCAATGAAGTGGTTCTAGCACT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1204:21018..22714-

>mRNA_P-littoralis_Contig1204.5.1 ID=mRNA_P-littoralis_Contig1204.5.1|Name=mRNA_P-littoralis_Contig1204.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig1204:21018..22714- (Pylaiella littoralis U1_48)
GCGAATGCGAGGTGCCTCTCCCGAGGTGGGACAAGCAACACCCCAACCGG
ACGACAACTTGCGGCAATCAACAGGGCTTCCTCGTGTCTCAACTACTACT
ACTACAGTAGACAACCAGGGCGTGCTGGATCGCCAAAAGGAGAGGTAGGA
AAGTACGACAACGTGTCGTATGTCCTTGCTCGCACGATCCGCAGCAATTT
GCGCCGCGAGGCGGCGAAATTGATCGGGTGCACGGGCATGGGTAACCAGT
GCAAGCGTGGGCAGTGCTTTGCACGAGCGATGCAGATGTTCCCTGGAAAA
GGAATGGACTGA
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