mRNA_P-littoralis_Contig877.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig877.14.1
Unique NamemRNA_P-littoralis_Contig877.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig877.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig877contigP-littoralis_Contig877:19699..20230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size266
Hectar predicted targeting categorysignal peptide
Exons3
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791757.9282959-CDS-P-littoralis_Contig877:19700..197551680791757.9282959-CDS-P-littoralis_Contig877:19700..19755Pylaiella littoralis U1_48CDSP-littoralis_Contig877 19701..19755 -
1680791757.9421206-CDS-P-littoralis_Contig877:19805..198941680791757.9421206-CDS-P-littoralis_Contig877:19805..19894Pylaiella littoralis U1_48CDSP-littoralis_Contig877 19806..19894 -
1680791757.9561443-CDS-P-littoralis_Contig877:20110..202301680791757.9561443-CDS-P-littoralis_Contig877:20110..20230Pylaiella littoralis U1_48CDSP-littoralis_Contig877 20111..20230 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig877.14.1prot_P-littoralis_Contig877.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig877 19701..20230 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig877.14.1

>prot_P-littoralis_Contig877.14.1 ID=prot_P-littoralis_Contig877.14.1|Name=mRNA_P-littoralis_Contig877.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=88bp
LFIILTIVRAVPGFWNMVSVFLTAPRRVVFAPRPTRRCAYKTNFGLFHDA
DKRYTQTQISRMRRASNTNACCERAVVQNTSHYEIRTF
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mRNA from alignment at P-littoralis_Contig877:19699..20230-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig877.14.1 ID=mRNA_P-littoralis_Contig877.14.1|Name=mRNA_P-littoralis_Contig877.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=532bp|location=Sequence derived from alignment at P-littoralis_Contig877:19699..20230- (Pylaiella littoralis U1_48)
TTATTCATTATTCTCACCATTGTCCGCGCCGTTCCTGGATTCTGGAATAT
GGTGAGTGTATTTTTAACTGCGCCCCGCCGTGTTGTGTTTGCGCCCCGCC
CTACCCGCCGTTGTGCATACGCCATATAAATGATACATTTAGGTGACGAG
AACCTGTACCGCTGTATGGATATGGATACAGCTTAGTACTGCTGTCTGTG
TGAGCAAACATGCCAAGCACTGCATCTACGAAATACGGGCTTTAACACGA
CTCCGAGAGGCGATACACGCAAGCCTCAATTTCCGAATGTAGGCACACGC
GCGGCAGCAGCAACCATTAAATCGAAAATCGTGCAGAAAACAAATTTTGG
GCTCTTCCACGACGCCGACAAGCGATACACACAAACCCAAATTTCCCGAA
TGAGACGTGCATCAAACACCAACGCACACGATAAGATCACATCGAAGATA
ACATGCTCCGTGATGACTGCCGCTACTGCTGTGAACGCGCTGTTGTACAA
AATACCTCCCACTACGAAATTCGGACTTTCCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig877:19699..20230-

>mRNA_P-littoralis_Contig877.14.1 ID=mRNA_P-littoralis_Contig877.14.1|Name=mRNA_P-littoralis_Contig877.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=264bp|location=Sequence derived from alignment at P-littoralis_Contig877:19699..20230- (Pylaiella littoralis U1_48)
TTATTCATTATTCTCACCATTGTCCGCGCCGTTCCTGGATTCTGGAATAT
GGTGAGTGTATTTTTAACTGCGCCCCGCCGTGTTGTGTTTGCGCCCCGCC
CTACCCGCCGTTGTGCATACAAAACAAATTTTGGGCTCTTCCACGACGCC
GACAAGCGATACACACAAACCCAAATTTCCCGAATGAGACGTGCATCAAA
CACCAACGCCTGCTGTGAACGCGCTGTTGTACAAAATACCTCCCACTACG
AAATTCGGACTTTC
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