mRNA_P-littoralis_Contig876.35.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig876.35.1
Unique NamemRNA_P-littoralis_Contig876.35.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig876.35.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 325 bits (833), Expect = 2.470e-106
Identity = 155/256 (60.55%), Postives = 190/256 (74.22%), Query Frame = 1
Query:   13 QVLASLHILGRGNFFEDMTQMSHISEPTIQITFHMFNKLFAQEFYHDHVHLPTAGEDQDQVMRHYDLLGFTGAIGSTDVTHIKWAACPYSWAKHYTGKEGFATIAFQAIVDHTGRLLAATKGFGGSMNDKTIITYDAAITKIREDPVYKEKEYTLFDKHGEPFQRKGNYSIVDNGYNKWEILIPPSKFAGTDIEIRWSKALESVRKDVECFFGILKGRFRILKLGILFQSLEDINNMFFTCCTLHNMLHAFDGLDE 780
            +VLA L IL RGN F D+  MS IS  T   TFH F + FA+E Y +H+ LPT G+ Q +VM  YD LGF+GA GSTDVTHI W  CPY+ A+ YTGKEG+ T+A+Q  VDHT R+LA T GF GS NDK+II YD A+TKIREDP+Y EKE+T+++  G P+Q KG Y +VDNGY+KW  LIPPSK+     ++ +SK LESVRKDVECFFGI+KGRFRILKL I +   EDI+N+FFTCC LHNMLH++D   E
Sbjct:  158 KVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPT-GDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSE 412          
BLAST of mRNA_P-littoralis_Contig876.35.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 310 bits (795), Expect = 1.340e-101
Identity = 153/253 (60.47%), Postives = 185/253 (73.12%), Query Frame = 1
Query:   13 QVLASLHILGRGNFFEDMTQMSHISEPTIQITFHMFNKLFAQEFYHDHVHLPTAGEDQDQVMRHYDLLGFTGAIGSTDVTHIKWAACPYSWAKHYTGKEGFATIAFQAIVDHTGRLLAATKGFGGSMNDKTIITYDAAITKIREDPVYKEKEYTLFDKHGEPFQRKGNYSIVDNGYNKWEILIPPSKFAGTDIEIRWSKALESVRKDVECFFGILKGRFRILKLGILFQSLEDINNMFFTCCTLHNMLHAFDG 771
            QVLA L IL RGN F D+  MS IS  T+  TFH F K FA E Y ++V+LPT GED  +VM  YD +GF GA+GSTDVTHI W  CPY+ A+ YTGKEG  T+AFQ  VDH+GR+LA T+GF G+ NDKTII YD A+T+IR DPVY E++Y L+ + G+ F+ KG Y +VDNGY+KW  LIPPSK      ++ +SK LES RKDVEC+FGILKGRFRI KL I F   E I+N+FFTCC LHNMLH+FD 
Sbjct:   83 QVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPT-GEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDN 334          
BLAST of mRNA_P-littoralis_Contig876.35.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 309 bits (792), Expect = 5.810e-100
Identity = 152/255 (59.61%), Postives = 186/255 (72.94%), Query Frame = 1
Query:    7 DCQVLASLHILGRGNFFEDMTQMSHISEPTIQITFHMFNKLFAQEFYHDHVHLPTAGEDQDQVMRHYDLLGFTGAIGSTDVTHIKWAACPYSWAKHYTGKEGFATIAFQAIVDHTGRLLAATKGFGGSMNDKTIITYDAAITKIREDPVYKEKEYTLFDKHGEPFQRKGNYSIVDNGYNKWEILIPPSKFAGTDIEIRWSKALESVRKDVECFFGILKGRFRILKLGILFQSLEDINNMFFTCCTLHNMLHAFDG 771
            + +VLA L IL RGN F D+  MS IS  T+  TFH F K FA E Y ++V+LPT GED  +VM  YD +GF GA+GSTDVTHI W  CPY+ A+ YTGKEG  T+AFQ  VDH+GR+LA T+GF G+ NDKTII YD A+T+IR DPVY E++Y L+ + G+ F+ KG Y +VDNGY+KW  LIPPSK      ++ +SK LES RKDVEC+FGILKGRFRI KL I F   E I+N+FFTCC LHNMLH+FD 
Sbjct:  172 ELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPT-GEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDN 425          
BLAST of mRNA_P-littoralis_Contig876.35.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 288 bits (736), Expect = 2.850e-92
Identity = 148/285 (51.93%), Postives = 188/285 (65.96%), Query Frame = 1
Query:   13 QVLASLHILGRGNFFEDMTQMSHISEPTIQITFHMFNKLFAQEFYHDHVHLPTAGEDQ-DQVMRHYDLLGFTGAIGSTDVTHIKWAACPYSWAKHYTGKEGFATIAFQAIVDHTGRLLAATKGFGGSMNDKTIITYDAAITKIREDPVYK----------------------------EKEYTLFDKHGEPFQRKGNYSIVDNGYNKWEILIPPSKFAGTDIEIRWSKALESVRKDVECFFGILKGRFRILKLGILFQSLEDINNMFFTCCTLHNMLHAFDGLDE 780
            +VLA L ILGRGN F  + QMS +S  T+Q  FH F + FA+E Y + +HLPT    + D VM+ YD LGFTGA+GS DVTHI W+ CPY+ A+ YTGKEGF TIA+Q  VDH GR +A T+GF GS NDKTI+ +D A+ KI  D  Y                             EK + ++++ G     KG Y +VDNGY+KW+ILI PSK+  ++ ++ +SK LESVRKDVECFFGILKGRFRILKL + +QS E I+N+FFTC  LHNMLH FDG+D+
Sbjct:   85 KVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNMLHTFDGMDQ 369          
BLAST of mRNA_P-littoralis_Contig876.35.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 285 bits (730), Expect = 5.440e-92
Identity = 136/257 (52.92%), Postives = 183/257 (71.21%), Query Frame = 1
Query:   13 QVLASLHILGRGNFFEDMTQMSHISEPTIQITFHMFNKLFAQEFYHDHVHLPTAGEDQ-DQVMRHYDLLGFTGAIGSTDVTHIKWAACPYSWAKHYTGKEGFATIAFQAIVDHTGRLLAATKGFGGSMNDKTIITYDAAITKIREDPVYKEKEYTLFDKHGEPFQRKGNYSIVDNGYNKWEILIPPSKFAGTDIEIRWSKALESVRKDVECFFGILKGRFRILKLGILFQSLEDINNMFFTCCTLHNMLHAFDGLDE 780
            +VLA L ILGRGN F  + Q+S +S  T+Q  FH F K FA+E Y +H++LP+    + D VM+ YD LGF+GA+GS DVTHI W+ CPY+ A+ YTGKEG  T+ +Q  V+H GR +A T+GF  S NDKT + +DA + KIR D  Y EK + ++++ G     KG Y +VDNGY+KW+IL+ P+K+  ++ +I +SK LESVRKDVECFFGILKG FRI K+ + +   E I+N+FFTCC LHNMLH FDG+D+
Sbjct:   98 KVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHTFDGMDQ 354          
BLAST of mRNA_P-littoralis_Contig876.35.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 282 bits (722), Expect = 6.010e-90
Identity = 139/255 (54.51%), Postives = 178/255 (69.80%), Query Frame = 1
Query:   13 QVLASLHILGRGNFFEDMTQMSHISEPTIQITFHMFNKLFAQEFYHDHVHLPTAGEDQ-DQVMRHYDLLGFTGAIGSTDVTHIKWAACPYSWAKHYTGKEGFATIAFQAIVDHTGRLLAATKGFGGSMNDKTIITYDAAITKIREDPVYKEKEYTLFDKHGEPFQRKGNYSIVDNGYNKWEILIPPSKFAGTDIEIRWSKALESVRKDVECFFGILKGRFRILKLGILFQSLEDINNMFFTCCTLHNMLHAFDGL 774
            +VLA L ILGRGN F  +  +S +S PT+Q  FH F + FA E Y +H+ LP+    + D+VM  Y+ LGF GA+GSTDVTHI W+ CPY+  + YTGKEG  T+ +Q  V+H GR+LA T+GF GS NDKTII  D A+ +IR D  Y EK +T+  K G     KG Y IVDNGY+KW +LI PSK+  ++ ++ +SK LESVRKDVECFFGILK RFRILKL + +Q  E ++ +FFTCC LHNMLH  DG+
Sbjct:  127 KVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGM 381          
BLAST of mRNA_P-littoralis_Contig876.35.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 268 bits (684), Expect = 2.190e-86
Identity = 125/213 (58.69%), Postives = 158/213 (74.18%), Query Frame = 1
Query:  145 YHDHVHLPTAGEDQ-DQVMRHYDLLGFTGAIGSTDVTHIKWAACPYSWAKHYTGKEGFATIAFQAIVDHTGRLLAATKGFGGSMNDKTIITYDAAITKIREDPVYKEKEYTLFDKHGEPFQRKGNYSIVDNGYNKWEILIPPSKFAGTDIEIRWSKALESVRKDVECFFGILKGRFRILKLGILFQSLEDINNMFFTCCTLHNMLHAFDGLDE 780
            Y +H+HLPT    + D V+  YD LGFTGA+GS DVTHI W+ CPY+ A+ YTGKEGF TI +Q  VDH GR +A T+GF GS NDKT + +DAA+ KIR D  Y EK + ++++ G     KG Y +VDNGY+KW+ILI PSK+  ++ ++ +SK LESVRKDVECFFGILKGR RIL L + FQS E I+N+FFTCC LHNMLH FDG+D+
Sbjct:    2 YDEHIHLPTEESGKLDLVIEQYDRLGFTGAMGSMDVTHIAWSRCPYNQARSYTGKEGFPTIGYQVTVDHAGRAIAVTEGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHNMLHTFDGMDQ 214          
BLAST of mRNA_P-littoralis_Contig876.35.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 268 bits (685), Expect = 5.040e-86
Identity = 136/257 (52.92%), Postives = 174/257 (67.70%), Query Frame = 1
Query:   13 QVLASLHILGRGNFFEDMTQMSHISEPTIQITFHMFNKLFAQEFYHDHVHLPTAGEDQ-DQVMRHYDLLGFTGAIGSTDVTHIKWAACPYSWAKHYTGKEGFATIAFQAIVDHTGRLLAATKGFGGSMNDKTIITYDAAITKIREDPVYKEKEYTLFDKHGEPFQRKGNYSIVDNGYNKWEILIPPSKFAGTDIEIRWSKALESVRKDVECFFGILKGRFRILKLGILFQSLEDINNMFFTCCTLHNMLHAFDGLDE 780
            QVLA L ILG+GN F  + QMS +S  T+Q  FH F +LFA+E Y +H+HLP     +   VM+ YD LG                 CPY+ A+ YTGK+ F TIA+Q  VDH  R +A T+GF GS NDKTI+ +DAA+ KIR D  Y EK + L+++ G     KG Y + DNGY+KW+ILI PSK+  ++ ++ +SK LESVRKDVECFFGILKGRFRILKL + +QS E I+N+FFTCC LHNMLH FDG+D+
Sbjct:   20 QVLAWLTILGKGNCFASIFQMSWMSAKTVQGVFHKFCRLFAREMYDEHIHLPAEESGKLHHVMKQYDRLG-----------------CPYNQARSYTGKDWFPTIAYQVTVDHASRAIAVTEGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQ 259          
BLAST of mRNA_P-littoralis_Contig876.35.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 3.030e-78
Identity = 126/248 (50.81%), Postives = 165/248 (66.53%), Query Frame = 1
Query:   34 ILGRGNFFEDMTQMSHISEPTIQITFHMFNKLFAQEFYHDHVHLPTAGEDQDQVMRHYDLLGFTGAIGSTDVTHIKWAACPYSWAKHYTGKEGFATIAFQAIVDHTGRLLAATKGFGGSMNDKTIITYDAAITKIREDPVYKEKEYTLFDKHGEPFQRKGNYSIVDNGYNKWEILIPPSKFAGTDIEIRWSKALESVRKDVECFFGILKGRFRILKLGILFQSLEDINNMFFTCCTLHNMLHAFDGLD 777
            +LG+GN F+D+ Q+S +S+   Q TFH F + FA E + +H++LPT G   D+VM  +  LG+TGA GSTDVTHI W  CP++  + +TGKEGF TIA+   VDH GR LA T GF G+ NDKTII YD+ + KIR    Y E+EY L   +G    R+G + IVDNGY++W  LI PSK+   + +  +S+ LESVRKDV CF        RILKL + +   E ++N+FFTCC LHNMLH FDGLD
Sbjct:   43 VLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPT-GTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKDVGCF--------RILKLRMPYHKREYVDNIFFTCCILHNMLHTFDGLD 281          
BLAST of mRNA_P-littoralis_Contig876.35.1 vs. uniprot
Match: A0A6H5KZ66_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ66_9PHAE)

HSP 1 Score: 243 bits (619), Expect = 1.990e-77
Identity = 119/170 (70.00%), Postives = 134/170 (78.82%), Query Frame = 1
Query:  271 CPYSWAKHYTGKEGFATIAFQAIVDHTGRLLAATKGFGGSMNDKTIITYDAAITKIREDPVYKEKEYTLFDKHGEPFQRKGNYSIVDNGYNKWEILIPPSKFAGTDIEIRWSKALESVRKDVECFFGILKGRFRILKLGILFQSLEDINNMFFTCCTLHNMLHAFDGLDE 780
            CPYS A+ YTGKEGF +IA+QAIVDHTGR+LA TKGF G+MNDKTII YD A+  IR DPVY EK  TLFD++G PF+RKGNYSIVDNGYNK            TD+E +WSKA ESVRKDVECF GIL GRF+ILKLGI FQ    I+N+F TCCTLHNMLHAFDGL+E
Sbjct:   21 CPYSRARQYTGKEGFPSIAYQAIVDHTGRVLAVTKGFPGAMNDKTIIRYDTAVAMIRRDPVYTEKVNTLFDENGRPFERKGNYSIVDNGYNK------------TDMESKWSKAQESVRKDVECF-GILMGRFKILKLGIFFQDKNVIDNLFVTCCTLHNMLHAFDGLEE 177          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig876.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAU4_9PHAE2.470e-10660.55Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY50_9PHAE1.340e-10160.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE5.810e-10059.61Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE2.850e-9251.93DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JHI0_9PHAE5.440e-9252.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBE2_9PHAE6.010e-9054.51Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FSK2_ECTSI2.190e-8658.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUX7_9PHAE5.040e-8652.92DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K796_9PHAE3.030e-7850.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ66_9PHAE1.990e-7770.00DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig876contigP-littoralis_Contig876:78074..80099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size780
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.6e-87
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size780
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791757.8645067-CDS-P-littoralis_Contig876:78073..783071680791757.8645067-CDS-P-littoralis_Contig876:78073..78307Pylaiella littoralis U1_48CDSP-littoralis_Contig876 78074..78307 -
1680791757.8792088-CDS-P-littoralis_Contig876:78890..792441680791757.8792088-CDS-P-littoralis_Contig876:78890..79244Pylaiella littoralis U1_48CDSP-littoralis_Contig876 78891..79244 -
1680791757.8928282-CDS-P-littoralis_Contig876:79907..800991680791757.8928282-CDS-P-littoralis_Contig876:79907..80099Pylaiella littoralis U1_48CDSP-littoralis_Contig876 79908..80099 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig876.35.1prot_P-littoralis_Contig876.35.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig876 78074..80099 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig876.35.1

>prot_P-littoralis_Contig876.35.1 ID=prot_P-littoralis_Contig876.35.1|Name=mRNA_P-littoralis_Contig876.35.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=260bp
FSDCQVLASLHILGRGNFFEDMTQMSHISEPTIQITFHMFNKLFAQEFYH
DHVHLPTAGEDQDQVMRHYDLLGFTGAIGSTDVTHIKWAACPYSWAKHYT
GKEGFATIAFQAIVDHTGRLLAATKGFGGSMNDKTIITYDAAITKIREDP
VYKEKEYTLFDKHGEPFQRKGNYSIVDNGYNKWEILIPPSKFAGTDIEIR
WSKALESVRKDVECFFGILKGRFRILKLGILFQSLEDINNMFFTCCTLHN
MLHAFDGLDE
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mRNA from alignment at P-littoralis_Contig876:78074..80099-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig876.35.1 ID=mRNA_P-littoralis_Contig876.35.1|Name=mRNA_P-littoralis_Contig876.35.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2026bp|location=Sequence derived from alignment at P-littoralis_Contig876:78074..80099- (Pylaiella littoralis U1_48)
TTTTCTGATTGTCAGGTCCTGGCATCGCTGCACATACTTGGGAGGGGCAA CTTCTTCGAGGATATGACCCAGATGTCTCACATTAGCGAGCCGACGATAC AAATCACCTTTCACATGTTCAACAAGCTTTTCGCGCAAGAGTTCTACCAC GACCACGTGCATCTGCCCACCGCCGGCGAGGACCAAGACCAGGTGACTGG TCTCATCGTACAAGTATTGTGAACCCATGTTTTTGTCCCGACACACGTAT CGTAGACCTTTTTATAATGCAAAGTATGTACGTTTACAAACTTCCGTTGT TGTGAAGTGGCGCATCTTGTCTTATTTTTTCTCGCCGTTAAAATATGGTA AATTTACCTACTTCAACTTCAGTGTCTCCTCATGATGGATTGCATTCTAT CTCCGACCGCCAAGGCATCGTTGTCCGTTTGCGTTGTGGTCGGACCATGC ACGGGAAGTCGATACCGGATTAAGCTGGCAGCGTGCTGCTCGTATCCGCG ATGTGTCGCATTTAGGCTGCCAAAAAGAACAACGATCAACACCTTCATTC GAGTCAACATTATCCACTGCCTCAAGTTAAGCACGTGCATTGCGGTCTTG GTAGCGCATTGGTCTGAGTAAACAACAACGCACCAAACAAAAAGCGGAAC GGCATCTATGTTCAGTTAAGTTAGGCACGTTGTAGCTCCCGGGTGTTGTG TGTGTTTGAAGTGCTGGATATGACATTGCCTCTATATCGTGTACCAGGTA TGTAGGTTGGTTTGTAGCCTCGACGCTCTCTCCTTTGGACGCATGAACCC CAAGCCTTTGCACGCCGTACTTCTTGCGACCCCACTGTTTCTTGCCAAAT ATCAGGTGATGAGGCATTACGACCTACTGGGGTTTACTGGAGCAATCGGT TCGACTGATGTCACCCACATCAAATGGGCGGCTTGCCCGTATTCTTGGGC GAAGCACTACACGGGAAAGGAAGGTTTCGCGACCATCGCCTTCCAGGCGA TCGTGGATCACACTGGGCGTCTCCTGGCCGCGACAAAGGGCTTTGGTGGC TCGATGAACGACAAGACCATCATCACGTACGACGCGGCCATCACTAAAAT CCGCGAAGACCCGGTCTACAAGGAGAAGGAGTACACTCTCTTCGACAAGC ATGGTGAGCCGTTCCAGCGAAAGGGCAACTACAGCATCGTCGACAATGGG TACAACAAGGTGAGATTGCTCTGCGGCTCGGTTGCTCGAGGTGTAGCCCG TGTGTTGGTGCCTCGTAGCTCTCCTATGGATAGGCTTCAACGCTGTGCTT GTACGTCATGATGGAGAATTAAGACGAAACTAGCGTTTGTCCTGCTCGTA CGTGGAGAGTCTGTATTCTCCTAGCAAGAACCGTTGACAAAAAGCATCTG AACGAACTCGAAGTAGTTTTACCCCGAATGTGTCGGGCGACCAGACAATA ACCAAGTTTATACCACCGCACTGTCTGAATGGGGTGTTGGCGGGGCTCGA TCTGTACGAATGCATCCGCCAAACAACATCGCACATGCTGTCCCGCGGGT TTGCTGTATGTCATGTTTTTTATGGTGTATTTTCGAACAACTGCTGCCCG CTGTTGTCCGCTGTTGAGTGTCCACTGTGAAGCGCACTCGGACGTCCAAG GAGCGTGTGAAGTGTTCAGCGTCCCGCTGATTAGAACACGTTTTTCACAC CGAAGCTCGAAGGTTGCCCCCTCCTCATCCCACGTGCTGTCTGCCTTTCG TTTCCGTCCGTCTGTCACGCCTCGCCTCCCTTCCTACATAAGTGGGAGAT CCTCATCCCCCCTAGCAAGTTCGCAGGTACCGATATCGAGATCAGGTGGA GCAAAGCGCTGGAGAGCGTTCGCAAGGACGTCGAGTGTTTTTTCGGCATC TTGAAGGGCCGTTTTAGAATTTTGAAACTAGGAATTCTTTTCCAAAGCTT GGAAGACATCAACAACATGTTCTTTACGTGTTGTACGTTGCACAACATGT TGCATGCGTTCGATGGGCTTGATGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig876:78074..80099-

>mRNA_P-littoralis_Contig876.35.1 ID=mRNA_P-littoralis_Contig876.35.1|Name=mRNA_P-littoralis_Contig876.35.1|organism=Pylaiella littoralis U1_48|type=CDS|length=780bp|location=Sequence derived from alignment at P-littoralis_Contig876:78074..80099- (Pylaiella littoralis U1_48)
TTTTCTGATTGTCAGGTCCTGGCATCGCTGCACATACTTGGGAGGGGCAA
CTTCTTCGAGGATATGACCCAGATGTCTCACATTAGCGAGCCGACGATAC
AAATCACCTTTCACATGTTCAACAAGCTTTTCGCGCAAGAGTTCTACCAC
GACCACGTGCATCTGCCCACCGCCGGCGAGGACCAAGACCAGGTGATGAG
GCATTACGACCTACTGGGGTTTACTGGAGCAATCGGTTCGACTGATGTCA
CCCACATCAAATGGGCGGCTTGCCCGTATTCTTGGGCGAAGCACTACACG
GGAAAGGAAGGTTTCGCGACCATCGCCTTCCAGGCGATCGTGGATCACAC
TGGGCGTCTCCTGGCCGCGACAAAGGGCTTTGGTGGCTCGATGAACGACA
AGACCATCATCACGTACGACGCGGCCATCACTAAAATCCGCGAAGACCCG
GTCTACAAGGAGAAGGAGTACACTCTCTTCGACAAGCATGGTGAGCCGTT
CCAGCGAAAGGGCAACTACAGCATCGTCGACAATGGGTACAACAAGTGGG
AGATCCTCATCCCCCCTAGCAAGTTCGCAGGTACCGATATCGAGATCAGG
TGGAGCAAAGCGCTGGAGAGCGTTCGCAAGGACGTCGAGTGTTTTTTCGG
CATCTTGAAGGGCCGTTTTAGAATTTTGAAACTAGGAATTCTTTTCCAAA
GCTTGGAAGACATCAACAACATGTTCTTTACGTGTTGTACGTTGCACAAC
ATGTTGCATGCGTTCGATGGGCTTGATGAA
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