mRNA_P-littoralis_Contig876.32.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig876.32.1
Unique NamemRNA_P-littoralis_Contig876.32.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig876.32.1 vs. uniprot
Match: A0A6H5KUY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY0_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.390e-23
Identity = 45/79 (56.96%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:    1 AELFQVVPGYYAAMTVKESGETFSNEGKMAAAVRHYEAFTAMAFLRWLTETADFSNSPAWLDKDIMGRNSMGEQLLGDA 237
            A LFQ +PG+YA M+VKESG+ +S   + A AV+ Y++F   AFLRWL E  DF+ +PAWL KDIMGRNSMG ++L +A
Sbjct:   35 ASLFQFLPGFYAGMSVKESGKCYSESDRNAEAVKVYKSFAVPAFLRWLVEKYDFTTTPAWLTKDIMGRNSMGPKILLEA 113
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BLAST of mRNA_P-littoralis_Contig876.32.1 vs. uniprot
Match: A0A6H5LQJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQJ9_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 9.200e-23
Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:    1 AELFQVVPGYYAAMTVKESGETFSNEGKMAAAVRHYEAFTAMAFLRWLTETADFSNSPAWLDKDIMGRNSMGEQLL 228
            A LFQ +PG+Y AM+VKESG+ +S   + A AV+ Y++F   AFLRWL E  DF+N+PAWL KDIMG NS+G ++L
Sbjct:   35 ASLFQFLPGFYVAMSVKESGKCYSEPERNAGAVKVYKSFAVPAFLRWLVEEYDFTNTPAWLTKDIMGSNSIGPKVL 110
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BLAST of mRNA_P-littoralis_Contig876.32.1 vs. uniprot
Match: A0A6H5KJ61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ61_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 2.460e-7
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    1 AELFQVVPGYYAAMTVKESGETFSNEGKMAAAVRHYEAFTAMAFLRWL 144
            A L Q +PG+Y AM+VKESG+ +S   + A AV+ Y++F   AFLRWL
Sbjct:   35 ASLSQFLPGFYVAMSVKESGKCYSEPDRNAEAVKVYKSFAVPAFLRWL 82
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig876.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KUY0_9PHAE1.390e-2356.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LQJ9_9PHAE9.200e-2356.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJ61_9PHAE2.460e-752.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig876contigP-littoralis_Contig876:70978..71223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size247
Hectar predicted targeting categoryother localisation
Exons1
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791757.8288643-CDS-P-littoralis_Contig876:70977..712231680791757.8288643-CDS-P-littoralis_Contig876:70977..71223Pylaiella littoralis U1_48CDSP-littoralis_Contig876 70978..71223 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig876.32.1prot_P-littoralis_Contig876.32.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig876 70978..71223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig876.32.1

>prot_P-littoralis_Contig876.32.1 ID=prot_P-littoralis_Contig876.32.1|Name=mRNA_P-littoralis_Contig876.32.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=82bp
AELFQVVPGYYAAMTVKESGETFSNEGKMAAAVRHYEAFTAMAFLRWLTE
TADFSNSPAWLDKDIMGRNSMGEQLLGDARKA
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mRNA from alignment at P-littoralis_Contig876:70978..71223+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig876.32.1 ID=mRNA_P-littoralis_Contig876.32.1|Name=mRNA_P-littoralis_Contig876.32.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=246bp|location=Sequence derived from alignment at P-littoralis_Contig876:70978..71223+ (Pylaiella littoralis U1_48)
GCTGAGCTGTTCCAGGTGGTACCCGGGTACTATGCAGCGATGACCGTGAA
GGAGAGTGGCGAAACCTTCAGCAATGAAGGAAAGATGGCGGCCGCGGTCC
GTCACTACGAGGCCTTCACCGCCATGGCCTTTCTGCGGTGGTTGACCGAG
ACCGCCGATTTTTCAAACTCTCCTGCCTGGTTGGACAAGGATATCATGGG
CCGCAACTCCATGGGAGAGCAGCTCTTGGGCGATGCCAGGAAAGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig876:70978..71223+

>mRNA_P-littoralis_Contig876.32.1 ID=mRNA_P-littoralis_Contig876.32.1|Name=mRNA_P-littoralis_Contig876.32.1|organism=Pylaiella littoralis U1_48|type=CDS|length=246bp|location=Sequence derived from alignment at P-littoralis_Contig876:70978..71223+ (Pylaiella littoralis U1_48)
GCTGAGCTGTTCCAGGTGGTACCCGGGTACTATGCAGCGATGACCGTGAA
GGAGAGTGGCGAAACCTTCAGCAATGAAGGAAAGATGGCGGCCGCGGTCC
GTCACTACGAGGCCTTCACCGCCATGGCCTTTCTGCGGTGGTTGACCGAG
ACCGCCGATTTTTCAAACTCTCCTGCCTGGTTGGACAAGGATATCATGGG
CCGCAACTCCATGGGAGAGCAGCTCTTGGGCGATGCCAGGAAAGCA
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