mRNA_P-littoralis_Contig876.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig876.12.1
Unique NamemRNA_P-littoralis_Contig876.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig876.12.1 vs. uniprot
Match: A0A6H5J7P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P3_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.010e-13
Identity = 43/71 (60.56%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:  550 KRRRRKYDNVSCVLARTIRSNLHQEAAKLIGCTGIGNQCKRGQYFARAMQVFPGKGMDRIPTEVVLALLRH 762
            K R  + DNVS VLART+R  L   AA+ IG +G GNQC+RG  FARAM +F GKGM+ IP +VVLALLR+
Sbjct:  153 KERDSQGDNVSYVLARTVRRILQYLAAQEIGASGQGNQCRRGDCFARAMGMFFGKGMEGIPRDVVLALLRY 223
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig876.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J7P3_9PHAE2.010e-1360.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig876contigP-littoralis_Contig876:27589..32302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1340
Hectar predicted targeting categoryother localisation
Exons2
Cds size504
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791757.5461433-UTR-P-littoralis_Contig876:27588..283951680791757.5461433-UTR-P-littoralis_Contig876:27588..28395Pylaiella littoralis U1_48UTRP-littoralis_Contig876 27589..28395 -
1680791757.5589223-UTR-P-littoralis_Contig876:31769..317751680791757.5589223-UTR-P-littoralis_Contig876:31769..31775Pylaiella littoralis U1_48UTRP-littoralis_Contig876 31770..31775 -
1680791757.580804-UTR-P-littoralis_Contig876:32279..323021680791757.580804-UTR-P-littoralis_Contig876:32279..32302Pylaiella littoralis U1_48UTRP-littoralis_Contig876 32280..32302 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791757.569909-CDS-P-littoralis_Contig876:31775..322791680791757.569909-CDS-P-littoralis_Contig876:31775..32279Pylaiella littoralis U1_48CDSP-littoralis_Contig876 31776..32279 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig876.12.1prot_P-littoralis_Contig876.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig876 31776..32279 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig876.12.1

>prot_P-littoralis_Contig876.12.1 ID=prot_P-littoralis_Contig876.12.1|Name=mRNA_P-littoralis_Contig876.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=168bp
MHIHPQIRRTNHSNERDHSVPPNGRRHLFQGNRPLLHLRQGGSKQKYYLC
SGKGGGCPVEVKAYKGRGGWNITGLVDGYTNCSGGMAKGKGTALHGMAAD
AMRDNPQLTGVAFKRKLERTGLKVTDRTATRLEKNAKKAHHAAVAGSYQQ
LLSLCAQLEKNSPGTVP*
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mRNA from alignment at P-littoralis_Contig876:27589..32302-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig876.12.1 ID=mRNA_P-littoralis_Contig876.12.1|Name=mRNA_P-littoralis_Contig876.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4714bp|location=Sequence derived from alignment at P-littoralis_Contig876:27589..32302- (Pylaiella littoralis U1_48)
CATTTTTCAGAATCCCGCACAACATGCACATCCACCCACAAATTCGTCGT
ACCAATCATAGTAATGAGCGAGACCACTCAGTACCTCCAAATGGCCGTAG
GCACCTTTTTCAAGGAAACCGGCCGCTCCTTCACCTCCGTCAGGGAGGCA
GCAAGCAGAAGTATTACCTCTGCTCGGGAAAGGGGGGGGGTTGCCCAGTA
GAGGTGAAAGCCTACAAGGGTAGGGGTGGCTGGAATATCACTGGATTGGT
AGACGGATATACCAACTGCTCCGGCGGGATGGCGAAGGGGAAGGGGACTG
CCTTGCACGGCATGGCCGCCGATGCCATGAGGGACAACCCTCAGCTGACG
GGGGTTGCGTTCAAACGCAAGCTTGAGAGGACGGGACTGAAAGTAACCGA
CCGAACAGCTACCCGCCTCGAGAAGAACGCCAAGAAGGCTCACCACGCGG
CGGTGGCTGGTTCATACCAGCAGCTCCTTTCCCTCTGCGCGCAACTCGAG
AAGAATTCCCCCGGCACCGTGCCCTAAGTTGAGGTGAGTAGAAGCATATA
GACTAGACAAGGATCGGACGGGGCCGCCTGAACGGCGGCCCCGTCCTGAA
GTAAAGGCGCCCTGGTCTGAGTGCGAGGATGGGAGATATATGAAAGTAGA
GATGGTTGTTGCAACATATTTATTGAACAGTATCGGGGGATACCAAGAGG
GTGACGCTGTGGTGGTTCATGGTGACGTACAGGGACGTCATCACGACCGA
ATTTAGTGTGATCGCTGAAGAGGAAATATATTATTAGTAGGAAACAACAT
GGATTAAATCCACTATGTTGCAAATGTCATTCAGAATCTAACTGCACCGA
ACACGAAGGCAAGCAGACGTGAAAAAATGAACGGAACTCATACTACAGCA
GTTGACACCAGCAGGGAAAGCTTGACTTCGCAACACGAAGAAGATGCCCT
CTCCCGCCCCTCTCTCTTTCTCCTTTCCCTTTCTCTCTCCGTCCCACTGT
ACAATTTAACCGCACCGAACACGAAGGCAAGCAGACGCGAAAAAATGAAC
GGAACTCCTACTACAGCAGTTGACACCAGGGAAAGCTTGACTGCGCAACA
CGAAGAAGATGCCCTCTCCCCCCCCTCCCTCTCTCTCCTTTCCCTTTTTC
TCTCCGTCTCTGATGTGTCCGTCGCAAGCCGGAGACGGGCAAGGCCAGTC
GGGTTTGCCTGGCTCAATGATCGCCCGAGGCTTCACCGAGCTTGCGTTCG
TCCTTGACTGATCGGACTTGCGCTTGTTCGATGAAGCCTTGGACAGTTCA
GAGAGAGAACGACGTCCCTTCATGATCGAGCGTTTTTTTTAGTATGTGTG
GGTGGGCGGTGCGGTACTGTGCCGGCTTGACGTGTCTCACTGACGTGTCC
GACCTTTCCAGTGTGCAATCACCCAATCGAATCTAACATTCACAATGACG
GGTCAATCGAATCTAACGTTCGCGAAGTTCACCTATATTTCGCCGCCTCA
GAGGATGGACACAACATGCCGTCTGAAACAGTCAATCTTCCATATATATG
TCATTTTCTGAACACTGAAATATTGAATTGATGCCCCTCGTGAGGGACTG
TGACATGCCACACTTGCGATGGTGAATGACACCGTGTCCAGTGTCCAAAC
ACCCGATCGAACGTTGGCGGAGATTCACCTATATTCGCCGCCTCAGAGGA
TCTTTCATGTGTTACTTTCTGATGTCAAGCATCGCTGATGCCAATTGTCA
GGGACTCTCAGATGATGCTGCGTTCCGATGGTGAAAACCAACACTACTTT
AGGCAGATGTAACTTGCTTGTAGACCGACTTTTCGCGTGCCTGAACACCG
TGCCGTGATGGAAAAACTTTGTAGAGCACGCCCAGCCTTTTAAGGCCTTT
CAACTTGTAAGGGCGCGCAGAGAGGTGAAGGGTTCCTCGTATTGTACTGT
TTTCAGACTGGGGTAAGTTGCGCCGCTTCGCTCTCGTTGGCCGCGTTCTG
CTCTCTCGTGAGCCCTCAGCGCAAAACGTCATCCTAGGTACCCATATAAT
CACCGCTTTGTCTTTTTTCCCTCTGTGGACAGCAACTCCAGTACCGGTAT
ATGCATATGTGCGCATCGTTTACGCAGCGACGAACCACCACACCACCACT
GCTGTGACGCTGTGGTACCCGACAATGAAAGGCTGGAAAAATACCGGGTA
TACAAGTCTACCCGTTTTTCGCCATTTCTCTCGTGAAGCATTATATACGA
TAGAATATAATACCATACAACACAAACAGTACCAAATTAGTGTCATCCTT
CGTTGGAATTGCTGCTGCTGTACGACCAATAACACTTTTAACGACGCACC
CTCATAATATTTGTTGAATTAGAACTCTTAAAACATTGCTGCAAGAGCTG
TAACCTATTTCTACACAGCATTAAGGCAGCTCTCTTTTCAGTATAATAAG
AAATCACGTTTTTTTTTTTATTTCCTTGCAAAAAAAATATATATAGGCCG
GCAAGGAGGTGCCGGTTCGACTACATCGCCCGATTTTGTTGCACGATCGG
AATCGGAGATCTGTAAGAAAAAGAAAGAAAGCGGTATAACCATAGAACAA
CACAGTTGGCGCGGACTCATCAACGCTGTGCTTTCGCGTTCACCAAGAAA
ACACACCAAGTGTGCACTCGTGTGTGCACACACAACGACCTCTTGTCCCT
GCTGCTTATACCTCATCACGACTGATGTTGACAAGCGTGCGGCAAGACGC
GTGAAGCCCACCGATTCCGTCCGATGTCAAGAGCTGAACGCCCGAGACCG
GAGACTCTACTGCTTGCTGCCGCTGCTGCTGCTGCTGCTGCTGCCTCTGC
TGAGCTAAGTAGTCGTGGAGTTCCTCCTGCCCAGGAGAGCGATGCACAAG
GCACACGTGAGACTAATGCAGCGGATACGCCTGCTGGTAATGGCAGTTAC
GTAGCCGGGTCATAGACACCAGAAGAGGAGTTTGGAGACGAGCTGGTGGC
GCTTCTCGGCACCCCTCCTTCGACTGACTACAGCAGTACTCCAAAGCTTT
GGCGGCCGCGATGTTGGAGTAGGCAACAAACGACCCCCTCCCACATCCTC
AACTGACTAGAACAGCAGTATCCGAGGCTGCAGGGGAGTGCGAATGCGAG
GTGCCTCTCCCGAGGTGGGACAAGAAAAACCCCAACCGGACTATAACTTG
CGGCAATCAACAGGGCTTCCTCGTGTCACAACTACGACTACTACAGTAGA
CAACCAGGTGTGTGTGCATTATGTTTGTGGAAGAGAGACCTGTTGCGCCA
GCGGTATGATATGACATGTTCGGAATGAAACATTTCAACCCAAACAACGG
CAGCCGTAGGCAACGGCAGTGGTACACTTACGATATCACAAGAGATAACA
CGAGCTGAAGACAACAGCAGCATCGGTATTTGAACTAGGCTCTCTGCATT
TCACGAGTCATCCTGCTATCATAGGTACCCGCTTCATAGATAGTTGAAGA
AAAACTGCTCACCGAAAGCCACATGTGTCACCACACCAAAAATGCCTGCT
GTACAGGGGTTGCTGGACACATAAACTGCACGAACAGCGGACGATCTGTA
GTAGTATCGAGCGGCATGTTTGATGATGTTGTTGCCGATGCTCGTTGGTA
GTCTAGTACGAAGTATTTAAACATGATGCCATCAACGAAGTTATCGAAAT
TGACGATGACATAAAATCACACAAAGATAGCAGTCAGTAGCACTCGAAAA
CATCGCTCGGGTGTGTTTGGGGTCTCGTAGTTCTAAGAGGCTGTTGGAGT
TTATTTTTTGTCTTGATGTTTCTTCGGCTACTGAACATGCTCAGTATGCT
CAGTGAATAAAACACCCCCCCCCCACCCTCGCGTCCCCGAAACGCATGAC
CTGACAGGGCGTGCTGGATCGCCAAAAGGAGAAGGAGGAAATACGATAAC
GTGTCGTGTGTCCTTGCTCGCACGATCCGCAGCAATTTGCACCAGGAGGC
GGCGAAATTGATCGGGTGTACGGGCATTGGTAACCAGTGCAAGCGTGGGC
AGTACTTTGCACGAGCGATGCAGGTGTTCCCTGGAAAAGGAATGGACCGA
ATACCCACTGAAGTGGTTCTAGCACTGTTGAGGCACTGATGATGGTTGCG
AATTGCTGTCGAGGAAATAGCAACTGCTGTATTTCGTAAATCACGAGCGG
ACGGAGCGGCGAGATCTCGAAAACTGTTGTAATCAGGGACAGCACCGGTA
TGCAGAGGGTGCTGAACACGTTGCGGATCAGATAAGTCGTGGTCAAGTGG
CGACTTCGCATAGTGCGTCTGTCTGTTTGATTACTTATGAGAAGTGTACG
GGCTTGTCTCCGTTTGTTCGGCATTGAAACACGAAGTGTGCTATGATACG
ATATTGGTGGCATGAAAATAGGAAATACTTTCGAAGAAGCATATTAAACT
AAATTGTACTCAGAAATATGGTATGATATTCGATGGGGTGTCTCAGAGCA
AATCAATAACAGTTGAATCCGCGATGAATGAGGGAGTCCCGTGGCGATTT
ATGGGGGCTCCATGTGTTGTTTTCGTGTAAAATGATGCTGTTTGTCTCCA
GGTTCAACAAGAATCTGCAGTTATCGACGAAGCTCGGGGAAGCGATCACG
GACATCGTTGTTCCACGCCCCAACTTGTTTTTCACGTACGTTCTCAGAGC
TGGACAAATTGCTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig876:27589..32302-

>mRNA_P-littoralis_Contig876.12.1 ID=mRNA_P-littoralis_Contig876.12.1|Name=mRNA_P-littoralis_Contig876.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=504bp|location=Sequence derived from alignment at P-littoralis_Contig876:27589..32302- (Pylaiella littoralis U1_48)
ATGCACATCCACCCACAAATTCGTCGTACCAATCATAGTAATGAGCGAGA
CCACTCAGTACCTCCAAATGGCCGTAGGCACCTTTTTCAAGGAAACCGGC
CGCTCCTTCACCTCCGTCAGGGAGGCAGCAAGCAGAAGTATTACCTCTGC
TCGGGAAAGGGGGGGGGTTGCCCAGTAGAGGTGAAAGCCTACAAGGGTAG
GGGTGGCTGGAATATCACTGGATTGGTAGACGGATATACCAACTGCTCCG
GCGGGATGGCGAAGGGGAAGGGGACTGCCTTGCACGGCATGGCCGCCGAT
GCCATGAGGGACAACCCTCAGCTGACGGGGGTTGCGTTCAAACGCAAGCT
TGAGAGGACGGGACTGAAAGTAACCGACCGAACAGCTACCCGCCTCGAGA
AGAACGCCAAGAAGGCTCACCACGCGGCGGTGGCTGGTTCATACCAGCAG
CTCCTTTCCCTCTGCGCGCAACTCGAGAAGAATTCCCCCGGCACCGTGCC
CTAA
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