mRNA_P-littoralis_Contig876.43.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig876.43.1
Unique NamemRNA_P-littoralis_Contig876.43.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig876.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig876contigP-littoralis_Contig876:99613..100749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size520
Hectar predicted targeting categoryother localisation
Exons3
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791757.391436-CDS-P-littoralis_Contig876:99612..998761680791757.391436-CDS-P-littoralis_Contig876:99612..99876Pylaiella littoralis U1_48CDSP-littoralis_Contig876 99613..99876 -
1680791757.406036-CDS-P-littoralis_Contig876:100026..1000891680791757.406036-CDS-P-littoralis_Contig876:100026..100089Pylaiella littoralis U1_48CDSP-littoralis_Contig876 100027..100089 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791757.4195762-UTR-P-littoralis_Contig876:100089..1002281680791757.4195762-UTR-P-littoralis_Contig876:100089..100228Pylaiella littoralis U1_48UTRP-littoralis_Contig876 100090..100228 -
1680791757.4314232-UTR-P-littoralis_Contig876:100697..1007491680791757.4314232-UTR-P-littoralis_Contig876:100697..100749Pylaiella littoralis U1_48UTRP-littoralis_Contig876 100698..100749 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig876.43.1prot_P-littoralis_Contig876.43.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig876 99613..100089 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig876.43.1

>prot_P-littoralis_Contig876.43.1 ID=prot_P-littoralis_Contig876.43.1|Name=mRNA_P-littoralis_Contig876.43.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=109bp
MPSYTAKEMAKSMAWHIGGEKIGDVGAVLETKANKLYAARTCGILLWGEI
IIRDHVKEAVQAAVGSTTTNLSQDLDFVRLLRVYNNKELRQMISKEESCN
SKSAMYMVV
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mRNA from alignment at P-littoralis_Contig876:99613..100749-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig876.43.1 ID=mRNA_P-littoralis_Contig876.43.1|Name=mRNA_P-littoralis_Contig876.43.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1137bp|location=Sequence derived from alignment at P-littoralis_Contig876:99613..100749- (Pylaiella littoralis U1_48)
AGCCAGAGCAGAGCTTGACTTCAACAGGTCATTCAAGGAAGGGATGTATC
AGGTATGTCGAAACGATCATCTATACCTTTTCTCAATAACTCTTCGTCGA
CATACTGTGACTTAACTTGAAAGCGAACATACTCCTTCGGTCACGCCTCT
GGCCGTAAGATCTACCGTGAACCCCTCTGCCTGCTCACCCCTCACCCCCC
CCCCCCTCCCGATTTATTTTTTTTGAGTTCATGCCTCGGGGTTGATTTTG
TTGGAGCAGACTTTCGAAATACGGAGTATAGTTCGAGGGGAAGTTCGAAA
CCGTGGAATTAACGACGGGGAGGTGTACTTTTCGCCCAAATCATGGAGGG
CGGGGTGGGGGGCTGTGTGTGGAGGTAAATGTAGTGGAGGAGGAGGAGAA
GTAAGGGCACCCCCCCTATTATAGGCATGTTCTTTTGGGTATGTGCATCA
GCTGCCAGGAAACATTATTCACGTTGTGTGCACTCTGAAATTTGATCATT
GTTTGACTTTGTTGGACACAGGAATGCACACGCGAGACGTCCGATACAGT
CGTGGGACCCAGGCGTCTTCCGAAAGGCGTTCTTTCGGACACAACCCCGC
CCAAGGTGCACGCTATGGTCAAATGTAGAATGGACCAAGATCCAAACGTG
AGCGAGGAGGATGCCCTCTTACACTGCAAAAGAGATGGCGAAATCCATGG
CATGGCACATCGGAGGTGAAAAGGTGACACAAATATTAACGACTGTTCCT
TCCAGTAGAACAGGTATCTGGAAATAAAAAACCGACTTGTGCGTACGGAT
CAAAGCCCCATTTCCTGAACAGATACAGCCCGGTGATGACGCCCTCTATC
CCCCCTAACGTGAAAACATACAGATAGGTGACGTCGGAGCCGTGCTCGAG
ACCAAAGCGAACAAGCTATACGCCGCCAGGACTTGTGGTATTCTGCTCTG
GGGAGAAATCATCATCAGAGACCACGTTAAAGAAGCAGTCCAGGCCGCGG
TGGGAAGCACTACAACTAACCTTTCGCAAGACTTGGATTTTGTTCGACTT
CTTCGCGTGTACAACAACAAAGAGCTGCGCCAGATGATCAGCAAAGAAGA
GAGCTGTAACTCGAAGTCCGCTATGTACATGGTAGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig876:99613..100749-

>mRNA_P-littoralis_Contig876.43.1 ID=mRNA_P-littoralis_Contig876.43.1|Name=mRNA_P-littoralis_Contig876.43.1|organism=Pylaiella littoralis U1_48|type=CDS|length=327bp|location=Sequence derived from alignment at P-littoralis_Contig876:99613..100749- (Pylaiella littoralis U1_48)
ATGCCCTCTTACACTGCAAAAGAGATGGCGAAATCCATGGCATGGCACAT
CGGAGGTGAAAAGATAGGTGACGTCGGAGCCGTGCTCGAGACCAAAGCGA
ACAAGCTATACGCCGCCAGGACTTGTGGTATTCTGCTCTGGGGAGAAATC
ATCATCAGAGACCACGTTAAAGAAGCAGTCCAGGCCGCGGTGGGAAGCAC
TACAACTAACCTTTCGCAAGACTTGGATTTTGTTCGACTTCTTCGCGTGT
ACAACAACAAAGAGCTGCGCCAGATGATCAGCAAAGAAGAGAGCTGTAAC
TCGAAGTCCGCTATGTACATGGTAGTG
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