mRNA_P-littoralis_Contig876.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig876.10.1
Unique NamemRNA_P-littoralis_Contig876.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig876.10.1 vs. uniprot
Match: A0A6H5KC74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC74_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 7.420e-5
Identity = 21/43 (48.84%), Postives = 28/43 (65.12%), Query Frame = 2 
Query:    2 PAAYDALMAKDLRRWAHHAGPSDTVIGDQTTSNPVEANMNMVG 130
            PA Y  LM  DL++W HHA PS+ V  + +TSN  E+ +N VG
Sbjct:   19 PANYGILMQNDLKKWTHHATPSNLVNLEMSTSNSAESTINAVG 61
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig876.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KC74_9PHAE7.420e-548.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig876contigP-littoralis_Contig876:17446..20351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size281
Hectar predicted targeting categoryother localisation
Exons2
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791757.3496902-CDS-P-littoralis_Contig876:17447..175901680791757.3496902-CDS-P-littoralis_Contig876:17447..17590Pylaiella littoralis U1_48CDSP-littoralis_Contig876 17448..17590 -
1680791757.3607576-CDS-P-littoralis_Contig876:20215..203511680791757.3607576-CDS-P-littoralis_Contig876:20215..20351Pylaiella littoralis U1_48CDSP-littoralis_Contig876 20216..20351 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig876.10.1prot_P-littoralis_Contig876.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig876 17448..20351 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig876.10.1

>prot_P-littoralis_Contig876.10.1 ID=prot_P-littoralis_Contig876.10.1|Name=mRNA_P-littoralis_Contig876.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=93bp
AGGVRRADGEGLEALGSPRRTVGHRHRRPDDVQPSRGQHEHGRESTCVAV
PPATAILMSAKTQPPTEPECISTSGQTVRRPRSRARALCSPGG
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mRNA from alignment at P-littoralis_Contig876:17446..20351-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig876.10.1 ID=mRNA_P-littoralis_Contig876.10.1|Name=mRNA_P-littoralis_Contig876.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2906bp|location=Sequence derived from alignment at P-littoralis_Contig876:17446..20351- (Pylaiella littoralis U1_48)
GCCGGCGGCGTACGACGCGCTGATGGCGAAGGACTTGAGGCGCTGGGCTC
ACCACGCCGGACCGTCGGACACCGTCATCGGCGACCAGACGACGTCCAAC
CCAGTAGAGGCCAACATGAACATGGTCGGGAAAGCAGTGAGTGTTTTTCT
TTTCTTTTTATTGTGTGCCGTCCGTTTTGCGGGAGTTCGGCGACATTGGT
GCAGGTGGTCAATAGAGGTGGCCGTCGAAATAGCAATTTTCACCGACATC
AGGGAAGAAGCAACAGTGCGCGGTGATACAGGTGCCTGGACGCATGAGTG
CGTGGGAGGATAGCAATCATGTGCAGACAGACCTTGTGGCCAGATATGTT
GGCGACAGCACACACTTATTCACCCTTCCTGGCAGATATTTTGTTGATTC
TTTTTTGTTGCTTATTTTTCTCTTTTCTTTTTAAAAGTTTGTGTCGATGC
TTTCTCCTACTTTTCATTTCGTTTAATCACTCTTCTATTATGTTCTCTTG
GTCGTGTTTTCTTCTTCTTGGACTACCGTCTATATTTCGGGCCAAAAGTG
TTTTGTATGCTGGTCCTCTTTTCAATTTATCAGATTTTTTATTTGAGAGT
TTGCGAAATAGAATATCGTATCTCGAATTTCCTTCCTTGGTTTCCCCGAG
GTTCCCCCGAGAGGCTCCGTGACTGCGCACCAAAAACAATTTATTTTCTC
AAATTCCGGAAATTCTTGGGATCAAAGGATATTTGAAAATAATCTGCTAA
GCGAGCCCGTGTCGGCACATCTTGTTATTGGCCAAATCACCCCGGCATCA
CCCGGACGGTGTGATCTGCGAGAAGATGGCGATACACCACTACGCTTCAG
TCGACAATACCGACCACTGCGCCGTGATTTTTGAAGGTACCGAGTTCAAA
GAAGGTTCCGTGCAACCCTGTAGTCACTGTGCCAACACCCTCGCCGCTGC
TTTAGGTGGCGGAAGTGCGCCAACCATGCAGAACATATCGTCTGAGCAGC
GGCTCTTTGAAAGTAGCAAGTGTGGGCTGGCGTGCGTCCCCAAAGGCACA
CCGCAGTTGAACACGACGGACATCAAAACATCACAGCAGTCACGCTCTCG
CTCTCTACACCACGTATCAAGGTGAAAACCTCTTGGCTGTCTCCTTTGTA
TAATGCTCTCCGCCCGCAGGAGGTTGGGTTGGAGTTGGGCTCATTCAATC
CGTGGAGAGAAGCAGAATCATCGCTCGAGGTCTGGCCGGCCACGCCGGAA
GTGCAAACGACCTTTTTTGCACATGAAAATAGAAGGGCCAAAATAGAACA
GCAGTGATTCCTTCCTCCACAACACAGCCTCTCTGCCGACCTTGCCCCAT
CCCTGCTGCCCATGACCCCTGAGTTTGTATTTACTTCGCATGACCCGGCA
CCCTCCACCACCACTTGAACGAAAGACTCATTGTGTTGTCTCTACAGCAT
GCGCAGCAGCACATCGTCAGCCGTTTGTTTGTGTCTTTGTGTTTGTGTTG
CTCTGCACTCCACAGCAAAGTGTAGGTCAGAAAGGACTTCCTTTCCGCAA
ACTCGTTGTCAAATTTTCGTCAAAAGGAATTCTTATTGTTTCACCGTTTT
TTTTTGTTTTTACAAGAAAGGAAATTTGAGATAAGATGTTCTATTTCACA
AACTCTTTATTATTTACTTTGATTTACGAGTTTTACAGAATGTTTTCCCC
TTTCGACGGTGTCTTCTCCCTGATTTCTTTTGGAGTGTACGGTCTTTTTT
TGCGATAAATCACCTTTCGCTCAATTCTTTATTTTCCATCGTGATCTAGT
ACCAGGTATCACGATATGATATCGTATGTGATTGGTTTTTAACAGCGGGC
TATACTTTGGTGATGACCGAATTTGCGAATCAACCACACTACACCAGAGT
TCACAGCCACTAGTTTGCTCGAAAGGTGGTGTCGTTGTTGATCGACTTCG
CAACGATAAGCCACCGAATACACCGGTGTCGGAAAAAATAGCAATTGTTT
CCTCGTAGAACCTCGATTCCTTTGTGGTCGCTTTCCTGCATATCTCACAA
ACGGGCAACTCGATCGTGGCTTGCTGCTTTTCTGATCACAGGCCAGGCTC
TTGCCTCCTTTTGGGCTGATCATGTCCATCCTCGGCGCGACCGCCAAAAG
GATGGCAGAGAAGGCTGAGCTTCGTTGCGTTTGGTTGTGTCCATGTGTGT
AGAATAATTTCAGGTTACGGAAGTATTGGGGCCGACGTGCCCAGACGTCC
CAAACATATCGGCATTCCTGACGGCATATTCTATGCCAAAGAGGGCGTTT
GTGGAGATTGCTGTCGCGTTCGATGCAGTTTGTGGCAGTCTTTGGTCGTA
TTTGAATATGACTCTTTGGATATTGTAGTTTTTTTCCATTTTTTTTCGAT
TGCTGTTGTTCATGAAACAATTAACCTTATCAAGGACCTTTCCATTCTGA
CTATTCTTGTTTCCGTATTGTCGGGGTGTGTCCTCTTGTGTTGTGATTGA
ATGGCGTACTGCCGCGTCTCGCCACGTCTCTGGTGGCCTCTAGTGCAGTG
GCCGACTTCCCCGGTAGAGCCGATACCCCTAGGTTGCTCCATCTGTGTCT
CGACGTCTTGTGCCGCACGGAGGGGGTGTGTACCTTTCACTCTCATTTTA
ATGGCTCTTAACCGTAACATGGCAAGCCTTGTTAGATGTTTTTCTGATAG
AATTTTTCCCGTTTCGTGTGTCGACGCGCCCTTCGTACTCAATGCCTCAA
TGCCATCACAGCCTGCGTAGCAGTCCCACCGGCAACGGCAATTTTAATGT
CAGCAAAGACACAACCACCTACGGAGCCCGAGTGCATCTCAACTTCGGGG
CAAACGGTGCGAAGACCGAGGTCTCGTGCACGTGCGCTTTGTTCGCCCGG
TGGAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig876:17446..20351-

>mRNA_P-littoralis_Contig876.10.1 ID=mRNA_P-littoralis_Contig876.10.1|Name=mRNA_P-littoralis_Contig876.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=279bp|location=Sequence derived from alignment at P-littoralis_Contig876:17446..20351- (Pylaiella littoralis U1_48)
GCCGGCGGCGTACGACGCGCTGATGGCGAAGGACTTGAGGCGCTGGGCTC
ACCACGCCGGACCGTCGGACACCGTCATCGGCGACCAGACGACGTCCAAC
CCAGTAGAGGCCAACATGAACATGGTCGGGAAAGCACCTGCGTAGCAGTC
CCACCGGCAACGGCAATTTTAATGTCAGCAAAGACACAACCACCTACGGA
GCCCGAGTGCATCTCAACTTCGGGGCAAACGGTGCGAAGACCGAGGTCTC
GTGCACGTGCGCTTTGTTCGCCCGGTGGA
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