mRNA_P-littoralis_Contig874.29.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig874.29.1 vs. uniprot
Match: D7FIC0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIC0_ECTSI) HSP 1 Score: 410 bits (1055), Expect = 7.720e-133 Identity = 252/426 (59.15%), Postives = 286/426 (67.14%), Query Frame = 1
Query: 64 RQTAEFERLRVTCRVDSVGIIPKAQEILRLMDTKCRPGALGKGELCRTAVAFDLACRTLDRPVPHQTAVKLSGASSEAVYVAALGTAQRLLGVQRRYSCEDVAKSVGGKRVGTMATTELKRYKERFLASYPAKQVASIDLEGTVYAVSAFYLCAKKLKHPVDKQRLLDLSLVREAEFTGVCRSMLDLCYSTLGVSVADKPSAERLRQFEKPAALGNTNTXXXXXXXTTNGRQFSRPQGGAARQAPAPAAPSSRPLPPGAKRHEDGGG---TSGRRSIPLSMGKGERGATPGTHIAALVRSIQAASQRKRCGGKRVATVEPGGSNEANDSLNDKTHRPAAAKRLRHPVPVSFTAAATXXXXXXXXGAFARPNGASAPAAGPAPDNGNDRAAALRPPRTAPVSVRNPYAATAAAGGCTASRTTGFSTG 1332
RQ AE ERLR+ C VDS I KAQEILR MDTKCRPG LG+G+L RT +AFDLACR L+ PVP +TAVKL GA SE+VYVAALGTAQRLLGVQRRY+C+++A+SVG K G A ELKRYKERFLASYP +QV+ IDL+GTVYAV+AFYLCAKKLKHPVDKQRLLDLSLVRE EF VCRSMLDLCYSTLGVSV+DKP+AERL +F+K AAL N N Q RPQG AA Q PA S L + +GGG + RR IPLS G+ ER PG+H+ AL RSIQAA+QRKR GG VA +EPGGSNEA+DSLND+TH A KR R P + AAA G + A + A PA R A PPR A V NP+A A A A TG G
Sbjct: 5 RQNAELERLRLACNVDSTETITKAQEILRRMDTKCRPGTLGRGDLFRTCIAFDLACRALNCPVPQKTAVKLCGAPSESVYVAALGTAQRLLGVQRRYTCKEIAESVGDKSAGMKAAVELKRYKERFLASYPVRQVSGIDLDGTVYAVAAFYLCAKKLKHPVDKQRLLDLSLVREDEFMAVCRSMLDLCYSTLGVSVSDKPTAERLSRFQKAAALNNKNNGSSSAPSGVKDEQ--RPQGSAA-QGPA----RSATLASSGPQRRNGGGFAASGNRRRIPLSGGR-ERLGAPGSHVTALARSIQAATQRKRHGGMTVAPLEPGGSNEASDSLNDRTHHRPATKRPR-PTADATEAAAAPPAEPAGGGPEPHDSAACSSATVPA------RCTAPAPPRAA---VCNPHATAATASPAAAVAATGKEAG 412
BLAST of mRNA_P-littoralis_Contig874.29.1 vs. uniprot
Match: A0A6H5J8P6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8P6_9PHAE) HSP 1 Score: 397 bits (1019), Expect = 2.510e-125 Identity = 225/350 (64.29%), Postives = 259/350 (74.00%), Query Frame = 1
Query: 52 MERIRQTAEFERLRVTCRVDSVGIIPKAQEILRLMDTKCRPGALGKGELCRTAVAFDLACRTLDRPVPHQTAVKLSGASSEAVYVAALGTAQRLLGVQRRYSCEDVAKSVGGKRVGTMATTELKRYKERFLASYPAKQVASIDLEGTVYAVSAFYLCAKKLKHPVDKQRLLDLSLVREAEFTGVCRSMLDLCYSTLGVSVADKPSAERLRQFEKPAALGNTNTXXXXXXXTTNGRQFSRPQGGAARQAPAPAAPSSRPLPPGAKRHEDGGG---TSGRRSIPLSMGKGERGATPGTHIAALVRSIQAASQRKRCGGKRVATVEPGGSNEANDSLNDKTHRPAAAKRLRHP 1092
ME RQ AE ERLR+ C V+S I KAQEILR M+TKCRPG LG+G+L RT +AFDLACR L+ PVPH+TAVKL GA SE VYVAALGTAQRLLGVQRRY+C ++A+SVG K G A ELKRYKERFLASYP +QV+SIDL+GTVYAV+AFYLCAKKLKHPVDKQRLLDLSLVRE EF VCRSMLDLCYSTLGVSV+DKP+AERL +F+K AAL + N Q RP AA Q PA +A ++ P + +GGG + RR IPLS + GAT G+H+ AL RSIQAA+QRKR GG VA +EPGG+NE NDSLND+TH A KR R P
Sbjct: 1 MEPKRQNAELERLRLACNVESTETITKAQEILRRMNTKCRPGTLGRGDLFRTCIAFDLACRALNCPVPHKTAVKLCGAPSEGVYVAALGTAQRLLGVQRRYTCREIAESVGDKSAGMKAAEELKRYKERFLASYPVRQVSSIDLDGTVYAVAAFYLCAKKLKHPVDKQRLLDLSLVREDEFMAVCRSMLDLCYSTLGVSVSDKPTAERLSRFQKAAALNSKNNGSSSAPSGVKDEQ--RPPESAA-QGPARSANAASTGP----QRRNGGGFAASGARRRIPLSGERDRLGAT-GSHVTALARSIQAATQRKRRGGMTVALLEPGGNNETNDSLNDRTHHRPATKRPRCP 342
BLAST of mRNA_P-littoralis_Contig874.29.1 vs. uniprot
Match: UPI00053C0C37 (origin of replication complex subunit 6 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C0C37) HSP 1 Score: 116 bits (290), Expect = 4.690e-25 Identity = 66/176 (37.50%), Postives = 97/176 (55.11%), Query Frame = 1
Query: 121 IIPKAQEILRLMDTKCRPGALGKGELCRTAVAFDLACRTLDRPVPHQTAVKLSGASSEAVYVAALGTAQRLLGVQRRYSCEDVAKSVGGKRVGTMATTELKRYKERFLASYPAKQVASIDLEGTVYAVSAFYLCAKKLKHPVDKQRLLDLSLVREAEFTGVCRSMLDLCYSTLGVS 648
++ KA E+ RL D + +G GE+C++ + ++A L Q A+KLSG S +A Y + T Q +G++ + ++A G R+ L YKERF+ S PA + A+ D V+ +AFYLCAKK K VDK RL+++ E+EF+ V SM DLCY GVS
Sbjct: 18 LVRKAAELRRLCDVQFDSSIIGVGEICKSVICLEIAASRLQVIFDRQAAIKLSGMSEKA-YTRSFNTLQNGIGLKIKLDVRELAIQFGCVRIVRTVREALSLYKERFITSLPASRRANADFTRPVFTAAAFYLCAKKQKLKVDKNRLIEVCGTSESEFSCVSTSMKDLCYDCFGVS 192
BLAST of mRNA_P-littoralis_Contig874.29.1 vs. uniprot
Match: A0A251T036_HELAN (Putative origin recognition complex protein 6 n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251T036_HELAN) HSP 1 Score: 115 bits (289), Expect = 6.090e-25 Identity = 65/184 (35.33%), Postives = 101/184 (54.89%), Query Frame = 1
Query: 109 DSVGIIPKAQEILRLMDTKCRPGALGKGELCRTAVAFDLACRTLDRPVPHQTAVKLSGASSEAVYVAALGTAQRLLGVQRRYSCEDVAKSVGGKRVGTMATTELKRYKERFLASYPAKQVASIDLEGTVYAVSAFYLCAKKLKHPVDKQRLLDLSLVREAEFTGVCRSMLDLCYSTLGVSVADK 660
+S ++ KA E+ R+ D + + G GE+C++ + ++A + QTA++LSG S +A Y+ + Q +G++ + ++A G R+ + L YKERF+AS P + AS D V+ + FYLCAKK K VDK +L++LS E EF+ V SM DLC+ GVS K
Sbjct: 14 ESKQVVRKAAELRRVSDLQFDSSSAGIGEICKSIICLEIAANMMQVIFDRQTAIRLSGMSEKA-YIRSFNVMQNGIGIKNKLDIRELAIQFGCVRLIPLVQKGLSLYKERFIASLPPSRRASADFTRPVFTATGFYLCAKKHKLKVDKNKLIELSGTSEDEFSSVSTSMKDLCHDVFGVSKEKK 196
BLAST of mRNA_P-littoralis_Contig874.29.1 vs. uniprot
Match: A0A118K386_CYNCS (Origin recognition complex, subunit 6 n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A118K386_CYNCS) HSP 1 Score: 114 bits (285), Expect = 2.150e-24 Identity = 66/180 (36.67%), Postives = 97/180 (53.89%), Query Frame = 1
Query: 121 IIPKAQEILRLMDTKCRPGALGKGELCRTAVAFDLACRTLDRPVPHQTAVKLSGASSEAVYVAALGTAQRLLGVQRRYSCEDVAKSVGGKRVGTMATTELKRYKERFLASYPAKQVASIDLEGTVYAVSAFYLCAKKLKHPVDKQRLLDLSLVREAEFTGVCRSMLDLCYSTLGVSVADK 660
++ KA E+ R+ D + G GE+C+ + ++A QTA++LSG S +A Y+ + Q +GV+ R ++A G R+ + L Y+ERF+AS PA + AS D V+ + FYLCAKK K VDK +L++LS E EF+ V SM DLC+ GVS K
Sbjct: 18 VVRKAAELRRMSDLQFDSSNAGIGEVCKAVICLEIAANMKQVLFDRQTAIRLSGMSEKA-YIRSFNVMQNGIGVKNRLDIRELAIQFGCVRLIPLVQKGLSLYRERFIASLPASRRASADCSRPVFTATGFYLCAKKHKLKVDKNKLIELSGTSEDEFSSVSTSMKDLCHDVFGVSKEKK 196
BLAST of mRNA_P-littoralis_Contig874.29.1 vs. uniprot
Match: A0A251U2C8_HELAN (Putative origin recognition complex, subunit 6 n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251U2C8_HELAN) HSP 1 Score: 111 bits (277), Expect = 2.350e-23 Identity = 65/180 (36.11%), Postives = 97/180 (53.89%), Query Frame = 1
Query: 121 IIPKAQEILRLMDTKCRPGALGKGELCRTAVAFDLACRTLDRPVPHQTAVKLSGASSEAVYVAALGTAQRLLGVQRRYSCEDVAKSVGGKRVGTMATTELKRYKERFLASYPAKQVASIDLEGTVYAVSAFYLCAKKLKHPVDKQRLLDLSLVREAEFTGVCRSMLDLCYSTLGVSVADK 660
I+ KA E+ R+ D + + G GE+C+ + ++A QTA++LSG S +A Y+ + Q +GV+ +++A G R+ + L YKERF+AS P + AS D V+ + FYLCAKK K VDK +L++LS E EF+ V SM DLC+ GV+ K
Sbjct: 18 IVRKAAELRRMSDLQFDSSSAGIGEICKAIICLEIAANMKQVLFDRQTAIRLSGMSEKA-YIRSFNVMQNGIGVKNTLDVKELAIQFGCVRLIPLVKKCLSLYKERFIASLPPSRRASADFTRPVFTAAGFYLCAKKHKLKVDKNKLIELSGTSEDEFSSVSTSMKDLCHDVFGVAKEKK 196
BLAST of mRNA_P-littoralis_Contig874.29.1 vs. uniprot
Match: A0A0K9P9W0_ZOSMR (Origin recognition complex subunit 6 n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9P9W0_ZOSMR) HSP 1 Score: 102 bits (255), Expect = 2.090e-20 Identity = 61/188 (32.45%), Postives = 95/188 (50.53%), Query Frame = 1
Query: 109 DSVGIIPKAQEILRLMDTKCRPGALGKGELCRTAVAFDLACRTLDRPVPHQTAVKLSGASSEAVYVAALGTAQRLLGVQRRYSCEDVAKSVGGKRVGTMATTELKRYKERFLASYPAKQVASIDLEGTVYAVSAFYLCAKKLKHPVDKQRLLDLSLVREAEFTGVCRSMLDLCYSTLGVSVADKPSAE 672
+S +I KA+E+ R D + ++G GE+C+ + ++A + AVK SG S +A Y+ Q LGV+ R ++ G R+ + + YK RF+ + P + AS D V+ AFYLCAK+ K VDK +L++L E+EF V SM DLC+ G++ K S +
Sbjct: 14 NSKQLIRKAEELQRRSDLQFHSSSIGVGEVCKAIICLEIAASGFHMIFDRKMAVKFSGMSEKA-YIRCFNGLQSSLGVKTRLDVRELGIQFGCVRLIPLVHKGISLYKTRFIEALPPSRRASTDFNRPVFTAVAFYLCAKRHKLKVDKNKLIELCGTSESEFACVATSMKDLCFDLFGIAKEKKDSKD 200
BLAST of mRNA_P-littoralis_Contig874.29.1 vs. uniprot
Match: A0A4D9CXW0_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CXW0_9STRA) HSP 1 Score: 101 bits (251), Expect = 4.010e-19 Identity = 65/189 (34.39%), Postives = 96/189 (50.79%), Query Frame = 1
Query: 118 GIIPK-----AQEILRLMDTKCRPGALGKGELCRTAVAFDLACRTLDRPVPHQTAVKLSGASSEAVYVAALGTAQRLLGVQRRYSCEDVAKSVGGKRVGTMATTELKRYKERFLASYPAKQ-VASIDLEGTVYAVSAFYLCAKKLKHPVDKQRLLDLSLVREAEFTGVCRSMLDLCYSTLGVSVADKPS 666
G PK A E+LR + KC+PG LGKGELCR AV +LACR + ++ E Y L A+ L + +S A +GG++ +A L Y+ R+ +S A + + ++Y +AF+L AKKLK VDK+RLL+LS + E + VC SM + C +G ++ S
Sbjct: 18 GAFPKEVARQASELLRRLAIKCKPGGLGKGELCRPAVCIELACRQCGHVAVSRESLIQQSMVKETSYRDVLRRAEHALELTTSWSAPQFALVLGGEQAVPLAERTLAEYQNRYRSSLQGGGGEARLLSQQSLYVGAAFFLAAKKLKMTVDKKRLLNLSGAQPHELSAVCASMQEFCADLVGTPATNRRS 206
BLAST of mRNA_P-littoralis_Contig874.29.1 vs. uniprot
Match: UPI001923CA2F (origin of replication complex subunit 6-like isoform X3 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=UPI001923CA2F) HSP 1 Score: 76.6 bits (187), Expect = 1.190e-11 Identity = 54/177 (30.51%), Postives = 82/177 (46.33%), Query Frame = 1
Query: 121 IIPKAQEILRLMDTKCRPGALGKGELCRTAVAFDLACRTLDRPV-PHQTAVKLSGASSEAVYVAALGTAQRLLGVQRRYSCEDVAKSVGGKRVGTMATTELKRYKERFLASYPAKQVASIDLEGTVYAVSAFYLCAKKLKHPVDKQRLLDLSLVREAEFTGVCRSMLDLCYSTLGVS 648
++ KA E+ RL D + +G GE+C+ + ++A + Q AVKLSG S +A Y + + Q L ++ ++ G R+ L AS D V+ AFYLCAKK K +DK RL+++ E+EF+ V SM DLC+ G+S
Sbjct: 18 LVRKAAELRRLCDVQFDSSIIGVGEVCKAVICLEIAATRFGEVLFDRQKAVKLSGMSEKA-YNRSFNSLQNGLNIKTTLDIRELGIQFGCVRLIPFVKKGLSLQ-------------ASADFTRPVFTAVAFYLCAKKHKLKIDKDRLIEVCGTSESEFSCVSTSMKDLCHDVFGIS 180
BLAST of mRNA_P-littoralis_Contig874.29.1 vs. uniprot
Match: A0A3B3RML2_9TELE (Origin recognition complex subunit 6 n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3RML2_9TELE) HSP 1 Score: 66.2 bits (160), Expect = 3.300e-8 Identity = 58/212 (27.36%), Postives = 95/212 (44.81%), Query Frame = 1
Query: 79 FERLRVTCRVDSVGIIPKAQEILRLMDTKCRPGALGKGELCRTAVAFDLACRTLDRPVPHQTAVKLSGASSEAVYVAALGTAQRLLGVQRRYSCEDVAKSVGGKRVGTMATTELKRYKERFLASYPAKQVASIDLEGTVYAVSAFYLCAKKLKHPVD---------KQRLLDLSLVREAEFTG-VCRSMLDLCYSTLGVSVADKPSAERLRQ 684
F +L + S I+ +A+E LRL +C LG R + +LA T+ P+ + +KLSG + VY ++L + + +LG++ D+A G + A L+RYK AS P Q AS+DL ++ +A + +K VD K+ +LD V+ +F +C M T + D+P + RQ
Sbjct: 6 FNKLACKMGITSAKILRQAEEYLRLSQIRCT--GLGNTVTSRAVICLELAATTMRHPLDKEYVIKLSGLNKN-VYRSSLKSMECILGLESHLGLGDLAVQYGCMQAAGPAAEILQRYK----ASLPETQQASLDLSKPLFTTAALLTACRCMKIKVDRKLAASSGAKKGMLDRLCVQFQKFAQEICSEM-----RTGTAAAKDQPKTAKKRQ 205 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig874.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig874.29.1 >prot_P-littoralis_Contig874.29.1 ID=prot_P-littoralis_Contig874.29.1|Name=mRNA_P-littoralis_Contig874.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=547bp MERIRQTAEFERLRVTCRVDSVGIIPKAQEILRLMDTKCRPGALGKGELCback to top mRNA from alignment at P-littoralis_Contig874:71881..79919- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig874.29.1 ID=mRNA_P-littoralis_Contig874.29.1|Name=mRNA_P-littoralis_Contig874.29.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8039bp|location=Sequence derived from alignment at P-littoralis_Contig874:71881..79919- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig874:71881..79919- >mRNA_P-littoralis_Contig874.29.1 ID=mRNA_P-littoralis_Contig874.29.1|Name=mRNA_P-littoralis_Contig874.29.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1641bp|location=Sequence derived from alignment at P-littoralis_Contig874:71881..79919- (Pylaiella littoralis U1_48)back to top |