mRNA_P-littoralis_Contig874.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig874.25.1
Unique NamemRNA_P-littoralis_Contig874.25.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig874.25.1 vs. uniprot
Match: D7FIC2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIC2_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 7.720e-42
Identity = 94/118 (79.66%), Postives = 96/118 (81.36%), Query Frame = 1 
Query: 1168 DGLELPSDLLLRVKSGGLQRMEADVLEAREA--DERAGEGAEGGRRPARVKAGDFPRSDNFRLVVLDEDDGGVDDNAGSKAHAAESAKKFLRDRMGSRKRVSHSLFKARKRLGPSPDF 1515
            DGLELPSDLLLRVKSGGLQRMEADVLEA E             GRR AR KAGD  RSDNFRLVVLDEDDGGVD +  SKAHAAESAK FLRDRMGSRKRVSHSLFKARKRLGPSP+F
Sbjct:   99 DGLELPSDLLLRVKSGGLQRMEADVLEAEEQAXXXXXXXXXXXGRRKARAKAGDASRSDNFRLVVLDEDDGGVDADDESKAHAAESAKNFLRDRMGSRKRVSHSLFKARKRLGPSPNF 216
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig874.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIC2_ECTSI7.720e-4279.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig874contigP-littoralis_Contig874:56910..60351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2633
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_001350.1
Cds size291
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791755.84719-UTR-P-littoralis_Contig874:56909..581361680791755.84719-UTR-P-littoralis_Contig874:56909..58136Pylaiella littoralis U1_48UTRP-littoralis_Contig874 56910..58136 +
1680791755.8884156-UTR-P-littoralis_Contig874:59236..603511680791755.8884156-UTR-P-littoralis_Contig874:59236..60351Pylaiella littoralis U1_48UTRP-littoralis_Contig874 59237..60351 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791755.8585865-CDS-P-littoralis_Contig874:58136..582431680791755.8585865-CDS-P-littoralis_Contig874:58136..58243Pylaiella littoralis U1_48CDSP-littoralis_Contig874 58137..58243 +
1680791755.8741343-CDS-P-littoralis_Contig874:59052..592361680791755.8741343-CDS-P-littoralis_Contig874:59052..59236Pylaiella littoralis U1_48CDSP-littoralis_Contig874 59053..59236 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig874.25.1prot_P-littoralis_Contig874.25.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig874 58137..59236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig874.25.1

>prot_P-littoralis_Contig874.25.1 ID=prot_P-littoralis_Contig874.25.1|Name=mRNA_P-littoralis_Contig874.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=97bp
MEADVLEAREADERAGEGAEGGRRPARVKAGDFPRSDNFRLVVLDEDDGG
VDDNAGSKAHAAESAKKFLRDRMGSRKRVSHSLFKARKRLGPSPDF*
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mRNA from alignment at P-littoralis_Contig874:56910..60351+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig874.25.1 ID=mRNA_P-littoralis_Contig874.25.1|Name=mRNA_P-littoralis_Contig874.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3442bp|location=Sequence derived from alignment at P-littoralis_Contig874:56910..60351+ (Pylaiella littoralis U1_48)
ATTTACGATACCTTGTACATACATTTCGAAGTACTATTTTATACTGGTAC
GTCACTTGTCATGTCGCATCTTCAATGTCTGCACTCTAAACACGAGAACC
AAAGCCGATCTGCAGGTAGACCACGCACCAGAGAATGCTTTCGATCTCCC
TCCATCATATAACATACTACCTGGTGCTGCTGTTTCATAACAGGGTCTCG
GACTCATCATGTCGATTTTCACACGTGCAGTAGCAGCTGCTGTAGCAACA
CACGCGACCGAGCAGGCAGTAGTTGTAGCACAACCCATGACATCAGAGGG
AGTGCTGTTCTCGTAGCGGCCCTCCGTGAGCTGTCGGGACCTGATGCTGC
TCTCTTTACGAAACCCTTCGTATCTGGGGTACTCCTCTCCCTCTCGAAAC
CACCGTGGGTACACCTGCTTGTCGTCGAGCTGTTGTCTTGACGCGGTCAC
GACGAACGCTGAGGACGGGACGGTGGGTGGAGCAGAGCAATGGCCCTGAA
CATCCAAGACACGTGCACACCCTACAGCATTGCCAAGAATTTCGGCATGC
ATACGTATGAGGGGCTAATGCCGCGATGACGAAGAAGCTGCAAGGTTTTG
AAGATCACGGGCATGCCTCGGCCTTCCACGACATCGTCCAGCTCGCACCA
CCCTGAAACGGGATGCCTGGCTCAGGCTGTTGTGTTTCTTGTGTTTCTAA
AATTTAAAATACTTTCCTGTCACCGGAGTACTTTTAACTATTTCGAGTGG
GCCTAAACTGCTGCCATACGGCTTCATACTGCGCTGTTCCAGAATCCCTA
GTGTACATGCTCTGTACATTCATGTTGAATCGCCTCTCGTTGCCCGCGAC
AGCCACTAACTTCCAACTTCTCTCCTTTGCCCCTTTCTTTCCCTCTGTCT
CTTGCATGAGGTTTTTCAAAATCGCTCAATACAGACGCCACCGACGAGGA
GCAGAGCAGCGATGACGAGGCGCCGGAAGAGGTGAGCGCTGCAGCGGCGA
CCGCCCTCGCAGGTCTGCGCAGAAAGGCGGAACACCAGGCCCGCCAGGCA
GCTGCCGTCCCGAAGCGAAAGCGCGCCCGAACCTCGCTTTCCAAGGGCGC
GGGGAGTGGCAAGAACGTCTCCTTGGAGGATGGGGGTTCAGGGGATGATG
AGGGGGGGTCGGGTGACGACGGGCTGGAGCTACCCTCGGACCTGCTGTTG
AGAGTGAAGTCGGGGGGTTTACAGCGTATGGAGGCGGACGTTCTGGAGGC
CAGGGAAGCCGATGAACGGGCGGGGGAGGGGGCAGAAGGCGGAAGGCGGC
CAGCGAGAGTCAAGGCCGGGGATTTCCCACGAAGGTGAGAGTAGAGGTAG
GCATTTGTAACAGAAGGTGGGGTTGACATGTGTAACCCTCCGCAGCAAAG
CGACACCCTCTCTTTCCCGACTGCGCATGATATCCCTTCTGTAGCTAAAA
TGACCGCGTCGTTCAGTCAACGTTGACATTCCACCTCACGGGCGGTGCTG
ATGTGGTTCTTCCTGTGTTACTTTCCTCGCGTCTTTCGTCCAGCACTGTT
ATCTTGTTTTGCTCTTTTATGATATACGTCGTACTGACATGAGGGAGGCA
TTTTCGGTTTCGCACTTGTCTCTGCACCATGTGTGTCCTGCTTGGTGCCG
GCGCGTCTGTTTGTCATGCCCCGTCGCCTCGCGTCCGCTGTGATGCGCCG
GGTTTGCTGTGCGTTTCCCACGGAGATGCAACGCTCTTATTTACGCAACA
GCGGCATGCACGTACACATGACATGCTTCTTTCTCTGAATCTACGGTGTT
TGCTCTGTCTATTCGTGTCAGACGTTTTGCTCGTATCGTATGCTCCTCTT
CTTGAACGCGTCGCCTGGATGCTAAATCTCGTACGAGCATCTCTCCTTGT
GAACGTCACACCATGTGTCTTTCTGAAGAGCACGCGTCCATCACGCTCTC
CACTGGTCGGCGGTTTTCCTTTCTGCCCCCCCTTCCCTCCCTCTCTCTCT
CTCTGTGTGCAGGCAGCTTCGACTGCTGTTGATTTATTCCCTTTGGATCG
CAAGAAATAATCTGATGAACGCCCCCTGCTCCTTCTCTTCCACGCGGGTG
TCTTTGCCTCCATGCCACGTCCACCATGACCTTGTGTTCTCAGTGATAAC
TTTCGACTAGTGGTGTTGGACGAGGACGACGGAGGCGTCGACGACAATGC
GGGCAGTAAGGCGCACGCCGCGGAAAGTGCGAAGAAATTTCTGCGCGACC
GCATGGGCAGCCGGAAGCGCGTCAGCCACAGTTTGTTTAAGGCTCGGAAG
CGTCTGGGTCCTTCACCGGATTTCTAATTAGAAAGAAATATGGGAGCACA
CAAGGAGTACCCCGCTGTCGTTGTCCATGCATCCCTTCGTTCTACCGAAT
CGAATGGTGTTACTTACAGTACTGGTGGTGCTTGTCTTCTCGCGGCTGTG
TGCGTGAATGCGGAGGGGGGGGAGGGGGGTGTAGCTGCAATGTTTTTGCA
AGTGCGAAACCATACGAGACTGTGGCGACGTAGTATAGCTCTGGGATTCT
TGTTTGTGGCGCATTTGGTACCTCGCCGAAACAGGCAGGCGTGAAATGCA
GATGTTCGGCGAGAGGTTGCTTGCATTGTCGTCGGGGGGCGAGTTCGTGT
AGATTACCTAGTTCGTGTGGCTTAGTTGAGTTGGTGTCTCGTCTGAACGT
GCGCGCTCTGCTTGCCATCATGTGAGCCAGTCCTATAGATGGAACGTGAG
CCGGGACGTACGGTGGTGCGTGGCCTGTATGCCTCCGCTCTCCGTCGTGT
GATGCCTGTATTTGCTTTTGTAGGCACGATGTGCGCTATTGAAATACGTG
TTTTTTTGTCTCCAATCTGCGTACATGTCATAGCATGAGTCTGTTTCATT
TTCATCATTGTCGAGAAGCAGTCCACGAGCGCAGCGAAGTGTAACTTCGG
TGTCGAACTGCTTCGAATTCATACCGACTTGGTCGTGATGTGCGGTGTGA
GTGTCTGTAGAATAAAAACAAAACAAAGAGAGACAGGTGCCTTTATTTTG
ATTTTCGAGGTCTATATACTTCGAAATATTGTGTCTGTCCGAGATCATGG
CCACATTTTGCAACACTTTGCCTTTTGCACCAGTTCAGCACAGATCGTAA
CGATCGAGGGCGTCAATGGATGACGTAAATAGCATCTACCCCATTGCTGC
TGGGTACACCGCAGTCCGTGTCCTGTGCGCACAGCTATGTTGACGGAGGC
GCGCAATTATCGGTGTCCTATTTTTGTGTGAAAAACGATCAGCGCGTTTT
GTGTTGATTGTGCTGGCGGAATACCAGCTGTCCAGCAGCAGCACTGCTGC
AGCAACGGTACACTCCACCATACAGCAACGCACACTGCTTGACGCAGCAA
TTTGAGAAGCGGCCACACTAACGCACACAGTTTCTCAACCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig874:56910..60351+

>mRNA_P-littoralis_Contig874.25.1 ID=mRNA_P-littoralis_Contig874.25.1|Name=mRNA_P-littoralis_Contig874.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=291bp|location=Sequence derived from alignment at P-littoralis_Contig874:56910..60351+ (Pylaiella littoralis U1_48)
ATGGAGGCGGACGTTCTGGAGGCCAGGGAAGCCGATGAACGGGCGGGGGA
GGGGGCAGAAGGCGGAAGGCGGCCAGCGAGAGTCAAGGCCGGGGATTTCC
CACGAAGTGATAACTTTCGACTAGTGGTGTTGGACGAGGACGACGGAGGC
GTCGACGACAATGCGGGCAGTAAGGCGCACGCCGCGGAAAGTGCGAAGAA
ATTTCTGCGCGACCGCATGGGCAGCCGGAAGCGCGTCAGCCACAGTTTGT
TTAAGGCTCGGAAGCGTCTGGGTCCTTCACCGGATTTCTAA
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